Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development by Magaletta, Margaret E., Lobo, Macrina, Kernfeld, Eric M., Aliee, Hananeh, Huey, Jack D., Parsons, Teagan J., Theis, Fabian J., Maehr, René

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Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex by Koupourtidou, Christina, Schwarz, Veronika, Aliee, Hananeh, Frerich, Simon, Fischer-Sternjak, Judith, Bocchi, Riccardo, Simon-Ebert, Tatiana, Bai, Xianshu, Sirko, Swetlana, Kirchhoff, Frank, Dichgans, Martin, Götz, Magdalena, Theis, Fabian J., Ninkovic, Jovica

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Sfaira accelerates data and model reuse in single cell genomics by Fischer, David S, Dony, Leander, König, Martin, Moeed, Abdul, Zappia, Luke, Heumos, Lukas, Tritschler, Sophie, Holmberg, Olle, Aliee, Hananeh, Theis, Fabian J

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Smoking increases expression of the SARS-CoV-2 spike protein-binding long ACE2 isoform in bronchial epithelium by Pouwels, Simon D, van den Berge, Maarten, Vasse, Gwenda F, Timens, Wim, Brandsma, Corry-Anke, Aliee, Hananeh, Hiemstra, Pieter S, Guryev, Victor, Faiz, Alen

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Determinants of expression of SARS‐CoV‐2 entry‐related genes in upper and lower airways by Aliee, Hananeh, Massip, Florian, Qi, Cancan, Stella de Biase, Maria, Nijnatten, Jos, Kersten, Elin T. G., Kermani, Nazanin Z., Khuder, Basil, Vonk, Judith M., Vermeulen, Roel C. H., Neighbors, Margaret, Tew, Gaik W., Grimbaldeston, Michele A., Hacken, Nick H. T., Hu, Sile, Guo, Yike, Zhang, Xiaoyu, Sun, Kai, Hiemstra, Pieter S., Ponder, Bruce A., Mäkelä, Mika J., Malmström, Kristiina, Rintoul, Robert C, Reyfman, Paul A., Theis, Fabian J., Brandsma, Corry‐Anke, Adcock, Ian M., Timens, Wim, Xu, Cheng‐Jian, Berge, Maarten, Schwarz, Roland F., Koppelman, Gerard H., Nawijn, M.C., Faiz, Alen

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Early transcriptional responses of bronchial epithelial cells to whole cigarette smoke mirror those of in-vivo exposed human bronchial mucosa by van der Does, Anne M, Mahbub, Rashad M, Ninaber, Dennis K, Rathnayake, Senani N H, Timens, Wim, van den Berge, Maarten, Aliee, Hananeh, Theis, Fabian J, Nawijn, Martijn C, Hiemstra, Pieter S, Faiz, Alen

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Association of bronchial steroid inducible methylation quantitative trait loci with asthma and chronic obstructive pulmonary disease treatment response by Slob, Elise M. A., Faiz, Alen, Nijnatten, Jos, Vijverberg, Susanne J. H., Longo, Cristina, Kutlu, Merve, Chew, Fook Tim, Sio, Yang Yie, Herrera‐Luis, Esther, Espuela‐Ortiz, Antonio, Perez‐Garcia, Javier, Pino‐Yanes, Maria, Burchard, Esteban G., Potočnik, Uroš, Gorenjak, Mario, Palmer, Colin, Maroteau, Cyrielle, Turner, Steve, Verhamme, Katia, Karimi, Leila, Mukhopadhyay, Somnath, Timens, Wim, Hiemstra, Pieter S., Pijnenburg, Mariëlle W., Neighbors, Margaret, Grimbaldeston, Michele A., Tew, Gaik W., Brandsma, Corry A., Berce, Vojko, Aliee, Hananeh, Theis, Fabian, Sin, Don D., Li, Xuan, Berge, Maarten, Maitland‐van der Zee, Anke H., Koppelman, Gerard H.

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Comparison of genome-wide gene expression profiling by RNA Sequencing versus microarray in bronchial biopsies of COPD patients before and after inhaled corticosteroid treatment: do... by Ditz, Benedikt, Boekhoudt, Jeunard G, Aliee, Hananeh, Theis, Fabian J, Nawijn, Martijn, Brandsma, Corry-Anke, Hiemstra, Pieter S, Timens, Wim, Tew, Gaik W, Grimbaldeston, Michele A, Neighbors, Margaret, Guryev, Victor, van den Berge, Maarten, Faiz, Alen

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Best practices for single-cell analysis across modalities by Heumos, Lukas, Schaar, Anna C., Lance, Christopher, Litinetskaya, Anastasia, Drost, Felix, Zappia, Luke, Lücken, Malte D., Strobl, Daniel C., Henao, Juan, Curion, Fabiola, Schiller, Herbert B., Theis, Fabian J.

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A new time-independent reliability importance measure by Borgonovo, Emanuele, Aliee, Hananeh, Glaß, Michael, Teich, Jürgen

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TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury by Zambusi, Alessandro, Novoselc, Klara Tereza, Hutten, Saskia, Kalpazidou, Sofia, Koupourtidou, Christina, Schieweck, Rico, Aschenbroich, Sven, Silva, Lara, Yazgili, Ayse Seda, van Bebber, Frauke, Schmid, Bettina, Möller, Gabriel, Tritscher, Clara, Stigloher, Christian, Delbridge, Claire, Sirko, Swetlana, Günes, Zeynep Irem, Liebscher, Sabine, Schlegel, Jürgen, Aliee, Hananeh, Theis, Fabian, Meiners, Silke, Kiebler, Michael, Dormann, Dorothee, Ninkovic, Jovica

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On the Boolean extension of the Birnbaum importance to non-coherent systems by Aliee, Hananeh, Borgonovo, Emanuele, Glaß, Michael, Teich, Jürgen

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A Fast and Accurate Fault Tree Analysis Based on Stochastic Logic Implemented on Field-Programmable Gate Arrays by Aliee, H., Zarandi, H. R.

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Accelerating accurate fault tree analysis using HW/SW co-design by Cheshmikhani, Elham, Zarandi, Hamid R., Aliee, Hananeh

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Resilience Articulation Point (RAP): Cross-layer dependability modeling for nanometer system-on-chip resilience by Herkersdorf, Andreas, Aliee, Hananeh, Engel, Michael, Glaß, Michael, Gimmler-Dumont, Christina, Henkel, Jörg, Kleeberger, Veit B., Kochte, Michael A., Kühn, Johannes M., Mueller-Gritschneder, Daniel, Nassif, Sani R., Rauchfuss, Holm, Rosenstiel, Wolfgang, Schlichtmann, Ulf, Shafique, Muhammad, Tahoori, Mehdi B., Teich, Jürgen, Wehn, Norbert, Weis, Christian, Wunderlich, Hans-Joachim

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Fault tree analysis using stochastic logic: A reliable and high speed computing by Aliee, H, Zarandi, H R

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Automatic success tree-based reliability analysis for the consideration of transient and permanent faults by Aliee, Hananeh, Glass, Michael, Reimann, Felix, Teich, Jurgen

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Resilience Articulation Point (RAP): Cross-layer dependability modeling for nanometer system-on-chip resilience : RELIABILITY AND VARIABILITY OF DEVICES FOR CIRCUITS AND SYSTEMS by HERKERSDORF, Andreas, ALIEE, Hananeh, NASSIF, Sani R, RAUCHFUSS, Holm, ROSENSTIEL, Wolfgang, SCHLICHTMANN, Ulf, SHAFIQUE, Muhammad, TAHOORI, Mehdi B, TEICH, Jürgen, WEHN, Norbert, WEIS, Christian, WUNDERLICH, Hans-Joachim, ENGEL, Michael, GLASS, Michael, GIMMLER-DUMONT, Christina, HENKEL, Jörg, KLEEBERGER, Veit B, KOCHTE, Michael A, KÜHN, Johannes M, MUELLER-GRITSCHNEDER, Daniel

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Automatic graph-based success tree construction and analysis by Aliee, Hananeh, Glas, Michael, Wanka, Rolf, Teich, Jurgen

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Conditionally Invariant Representation Learning for Disentangling Cellular Heterogeneity by Hananeh Aliee, Kapl, Ferdinand, Hediyeh-Zadeh, Soroor, Theis, Fabian J

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