Search Results - ATHREYA, Gayathri

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  1. 1
    Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing

    Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing by Salazar-Gonzalez, Jesus F, Bailes, Elizabeth, Pham, Kimmy T, Salazar, Maria G, Guffey, M Brad, Keele, Brandon F, Derdeyn, Cynthia A, Farmer, Paul, Hunter, Eric, Allen, Susan, Manigart, Olivier, Mulenga, Joseph, Anderson, Jeffrey A, Swanstrom, Ronald, Haynes, Barton F, Athreya, Gayathri S, Korber, Bette T M, Sharp, Paul M, Shaw, George M, Hahn, Beatrice H

    Published in Journal of Virology
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  2. 2
    Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

    Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection by Song, Hongshuo, Giorgi, Elena E., Ganusov, Vitaly V., Cai, Fangping, Athreya, Gayathri, Yoon, Hyejin, Carja, Oana, Hora, Bhavna, Hraber, Peter, Romero-Severson, Ethan, Jiang, Chunlai, Li, Xiaojun, Wang, Shuyi, Li, Hui, Salazar-Gonzalez, Jesus F., Salazar, Maria G., Goonetilleke, Nilu, Keele, Brandon F., Montefiori, David C., Cohen, Myron S., Shaw, George M., Hahn, Beatrice H., McMichael, Andrew J., Haynes, Barton F., Korber, Bette, Bhattacharya, Tanmoy, Gao, Feng

    Published in Nature communications
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  3. 3
    Modeling sequence evolution in acute HIV-1 infection

    Modeling sequence evolution in acute HIV-1 infection by Lee, Ha Youn, Giorgi, Elena E., Keele, Brandon F., Gaschen, Brian, Athreya, Gayathri S., Salazar-Gonzalez, Jesus F., Pham, Kimmy T., Goepfert, Paul A., Michael Kilby, J., Saag, Michael S., Delwart, Eric L., Busch, Michael P., Hahn, Beatrice H., Shaw, George M., Korber, Bette T., Bhattacharya, Tanmoy, Perelson, Alan S.

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  4. 4
    A multiple-alignment based primer design algorithm for genetically highly variable DNA targets

    A multiple-alignment based primer design algorithm for genetically highly variable DNA targets by Brodin, Johanna, Krishnamoorthy, Mohan, Athreya, Gayathri, Fischer, Will, Hraber, Peter, Gleasner, Cheryl, Green, Lance, Korber, Bette, Leitner, Thomas

    Published in BMC bioinformatics
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  5. 5
    Estimating time since infection in early homogeneous HIV-1 samples using a poisson model

    Estimating time since infection in early homogeneous HIV-1 samples using a poisson model by Giorgi, Elena E, Funkhouser, Bob, Athreya, Gayathri, Perelson, Alan S, Korber, Bette T, Bhattacharya, Tanmoy

    Published in BMC bioinformatics
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  6. 6
    Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

    Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection by Keele, Brandon F, Giorgi, Elena E, Salazar-Gonzalez, Jesus F, Decker, Julie M, Pham, Kimmy T, Salazar, Maria G, Sun, Chuanxi, Grayson, Truman, Wang, Shuyi, Li, Hui, Wei, Xiping, Jiang, Chunlai, Kirchherr, Jennifer L, Gao, Feng, Anderson, Jeffery A, Ping, Li-Hua, Swanstrom, Ronald, Tomaras, Georgia D, Blattner, William A, Goepfert, Paul A, Kilby, J. Michael, Saag, Michael S, Delwart, Eric L, Busch, Michael P, Cohen, Myron S, Montefiori, David C, Haynes, Barton F, Gaschen, Brian, Athreya, Gayathri S, Lee, Ha Y, Wood, Natasha, Seoighe, Cathal, Perelson, Alan S, Bhattacharya, Tanmoy, Korber, Bette T, Hahn, Beatrice H, Shaw, George M

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  7. 7
    Unequal Evolutionary Rates in the Human Immunodeficiency Virus Type 1 (HIV-1) Pandemic: the Evolutionary Rate of HIV-1 Slows Down When the Epidemic Rate Increases

    Unequal Evolutionary Rates in the Human Immunodeficiency Virus Type 1 (HIV-1) Pandemic: the Evolutionary Rate of HIV-1 Slows Down When the Epidemic Rate Increases by MALJKOVIC BERRY, Irina, RIBEIRO, Ruy, KOTHARI, Moulik, ATHREYA, Gayathri, DANIELS, Marcus, HA YOUN LEE, BRUNO, William, LEITNER, Thomas

    Published in Journal of Virology
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  8. 8
    Computer supported workflow for cataloging and management in digital libraries

    Computer supported workflow for cataloging and management in digital libraries by Ke, Weimao, Mostafa, Javed, S. Athreya, Gayathri

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  9. 9
    Corrigendum to “Modeling sequence evolution in acute HIV-1 infection” [J. Theor. Biol. 261 (2009) 341–360]

    Corrigendum to “Modeling sequence evolution in acute HIV-1 infection” [J. Theor. Biol. 261 (2009) 341–360] by Lee, Ha Youn, Giorgi, Elena E., Keele, Brandon F., Gaschen, Brian, Athreya, Gayathri S., Salazar-Gonzalez, Jesus F., Pham, Kimmy T., Goepfert, Paul A., Kilby, J. Michael, Saag, Michael S., Delwart, Eric L., Busch, Michael P., Hahn, Beatrice H., Shaw, George M., Korber, Bette T., Bhattacharya, Tanmoy, Perelson, Alan S.

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  10. 10
    The evolutionary rate dynamically tracks changes in HIV-1 epidemics: Application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data

    The evolutionary rate dynamically tracks changes in HIV-1 epidemics: Application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal dat... by Maljkovic Berry, Irina, Athreya, Gayathri, Kothari, Moulik, Daniels, Marcus, Bruno, William J, Korber, Bette, Kuiken, Carla, Ribeiro, Ruy M, Leitner, Thomas

    Published in Epidemics
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  11. 11
    Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencin

    Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencin by SALAZAR-GONZALEZ, Jesus F, BAILES, Elizabeth, MANIGART, Olivier, MULENGA, Joseph, ANDERSON, Jeffrey A, SWANSTROM, Ronald, HAYNES, Barton F, ATHREYA, Gayathri S, KORBER, Bette T. M, SHARP, Paul M, SHAW, George M, HAHN, Beatrice H, PHAM, Kimmy T, SALAZAR, Maria G, GUFFEY, M. Brad, KEELE, Brandon F, DERDEYN, Cynthia A, FARMER, Paul, HUNTER, Eric, ALLEN, Susan

    Published in Journal of virology
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  12. 12
    WITHDRAWN: The evolutionary rate dynamically tracks changes in HIV-1 epidemics: Application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data

    WITHDRAWN: The evolutionary rate dynamically tracks changes in HIV-1 epidemics: Application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longi... by Berry, Irina Maljkovic, Athreya, Gayathri, Kothari, Moulik, Daniels, Marcus, Bruno, William J., Korber, Bette, Kuiken, Carla, Ribeiro, Ruy M., Leitner, Thomas

    Published in Epidemics
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