A Final Frontier in Environment-Genome Interactions? Integrated, Multi-Omic Approaches to Predictions of Non-Communicable Disease Risk by Noble, Alexandra J, Purcell, Rachel V, Adams, Alex T, Lam, Ying K, Ring, Paulina M, Anderson, Jessica R, Osborne, Amy J

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Network analysis reveals distinct clinical syndromes underlying acute mountain sickness by Hall, David P, MacCormick, Ian J C, Phythian-Adams, Alex T, Rzechorzek, Nina M, Hope-Jones, David, Cosens, Sorrel, Jackson, Stewart, Bates, Matthew G D, Collier, David J, Hume, David A, Freeman, Thomas, Thompson, A A Roger, Baillie, John Kenneth

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Prenatal cannabis exposure is associated with alterations in offspring DNA methylation at genes involved in neurodevelopment, across the life course by Noble, Alexandra J, Adams, Alex T, Satsangi, Jack, Boden, Joseph M, Osborne, Amy J

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Waiting in the wings: RUNX3 reveals hidden depths of immune regulation with potential implications for inflammatory bowel disease by Dybska, Emilia, Adams, Alex T., Duclaux‐Loras, Rémi, Walkowiak, Jarosław, Nowak, Jan K.

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Two-stage genome-wide methylation profiling in childhood-onset Crohn's Disease implicates epigenetic alterations at the VMP1/MIR21 and HLA loci by Adams, Alex T, Kennedy, Nicholas A, Hansen, Richard, Ventham, Nicholas T, OʼLeary, Kate R, Drummond, Hazel E, Noble, Colin L, El-Omar, Emad, Russell, Richard K, Wilson, David C, Nimmo, Elaine R, Hold, Georgina L, Satsangi, Jack

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Serum N-Glycomic Biomarkers Predict Treatment Escalation in Inflammatory Bowel Disease by Shubhakar, Archana, Jansen, Bas C, Adams, Alex T, Reiding, Karli R, Ventham, Nicholas T, Kalla, Rahul, Bergemalm, Daniel, Urbanowicz, Paulina A, Gardner, Richard A, Wuhrer, Manfred, Halfvarson, Jonas, Satsangi, Jack, Fernandes, Daryl L, Spencer, Daniel I R

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Immune cell-specific smoking-related expression characteristics are revealed by re-analysis of transcriptomes from the CEDAR cohort by Nowak, Jan Krzysztof, Dybska, Emilia, Adams, Alex T, Walkowiak, Jaroslaw

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Blood-based DNA methylation in Crohn's disease and severity of intestinal inflammation by Kalla, Rahul, Adams, Alex T, Satsangi, Jack

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Unexpected Actors in Inflammatory Bowel Disease Revealed by Machine Learning from Whole-Blood Transcriptomic Data by Nowak, Jan K, Szymańska, Cyntia J, Glapa-Nowak, Aleksandra, Duclaux-Loras, Rémi, Dybska, Emilia, Ostrowski, Jerzy, Walkowiak, Jarosław, Adams, Alex T

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Serum proteomic profiling at diagnosis predicts clinical course, and need for intensification of treatment in inflammatory bowel disease by Kalla, R, Adams, A T, Bergemalm, D, Vatn, S, Kennedy, N A, Ricanek, P, Lindstrom, J, Ocklind, A, Hjelm, F, Ventham, N T, Ho, G T, Petren, C, Repsilber, D, Söderholm, J, Pierik, M, D’Amato, M, Gomollón, F, Olbjorn, C, Jahnsen, J, Vatn, M H, Halfvarson, J, Satsangi, J

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Fecal microbiota profiles in treatment-naïve pediatric inflammatory bowel disease - associations with disease phenotype, treatment, and outcome by Olbjørn, Christine, Cvancarova Småstuen, Milada, Thiis-Evensen, Espen, Nakstad, Britt, Vatn, Morten Harald, Jahnsen, Jørgen, Ricanek, Petr, Vatn, Simen, Moen, Aina E F, Tannæs, Tone M, Lindstrøm, Jonas C, Söderholm, Johan D, Halfvarson, Jonas, Gomollón, Fernando, Casén, Christina, Karlsson, Magdalena K, Kalla, Rahul, Adams, Alex T, Satsangi, Jack, Perminow, Gøri

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A central role for Type I IFN in the induction of Th2 responses by dendritic cells by Webb, Lauren M, Lundie, Rachel J, Borger, Jessica G, Cartwright, Adam N, Cook, Peter C, Brown, Sheila L, Jackson-Jones, Lucy, Phythian-Adams, Alex T, Davis, Daniel M, MacDonald, Andrew S

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Whole blood profiling of T-cell derived miRNA allows the development of prognostic models in inflammatory bowel disease by Kalla, Rahul, Adams, Alex T, Ventham, Nicholas T, Kennedy, Nicholas A, White, R, Clark, C, Ivens, A, Bergemalm, Daniel, Vatn, Simen Svendsen, Lopez-Jimena, B, Ricanek, Petr, Vatn, Morten H, Söderholm, Johan D, Gomollón, Fernando, Nowak, Jan Krzysztof, Jahnsen, Jørgen, Halfvarson, Jonas, McTaggart, S, Ho, G. T, Buck, A, Satsangi, Jack

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Genome-Wide Methylation Profiling in 229 Patients With Crohn’s Disease Requiring Intestinal Resection: Epigenetic Analysis of the Trial of Prevention of Post-operative Crohn’s Dise... by Nicholas T. Ventham, Nicholas A. Kennedy, Rahul Kalla, Alex T. Adams, Alexandra Noble, Holly Ennis, Craig Mowat, Malcolm G. Dunlop, Jack Satsangi, Ian Arnott, Aiden Cahill, Malcolm Smith, Tariq Ahmad, Sreedhar Subramanian, Simon Travis, John Morris, John Hamlin, Anjan Dhar, Chuka Nwokolo, Cathryn Edwards, Tom Creed, Stuart Bloom, Mohamed Yousif, Linzi Thomas, Simon Campbell, Stephen J. Lewis, Shaji Sebastian, Sandip Sen, Simon Lal, Chris Hawkey, Charles Murray, Fraser Cummings, Jason Goh, James O. Lindsay, Naila Arebi, Lindsay Potts, Aileen J. McKinley, John M. Thomson, John A. Todd, Mhairi Collie, Ashley Mowat, Daniel R. Gaya, Jack Winter, Graham D. Naismith, Holly Ennis, Catriona Keerie, Steff Lewis, Robin J. Prescott, Gordan Lauc, Harry Campbell, Dermot P.B. McGovern, Vito Annese, Vlatka Zoldoš, Iain K. Permberton, Manfred Wuhrer, Daniel Kolarich, Daryl L. Fernandes, Evropi Theorodorou, Victoria Merrick Daniel I. Spencer, Richard A. Gardner, Ray Doran, Archana Shubhakar, Ray Boyapati, Igor Rudan, Paolo Lionetti, Irena Trbojević Akmačić, Jasminka Krištić, Frano Vuč ković, Jerko Štambuk, Mislav Novokmet, Maja Pučić-Baković, Olga Gornik, Angelo Andriulli, Laura Cantoro, Giancarlo Sturniolo, Gionata Fiorino, Natalia Manetti, Anna Latiano, Anna Kohn, Renata D’Inca`, Silvio Danese, Ian D. Arnott, Colin L. Noble, Charlie W. Lees, Alan G. Shand, Gwo-Tzer Ho, Lee Murphy, Jude Gibson, Louise Evenden, Nicola Wrobel, Tamara Gilchrist, Angie Fawkes, Guinevere S.M. Kammeijer, Florent Clerc, Noortje de Haan, Aleksandar Vojta, Ivana Samaržija, Dora Markulin, Marija Klasić, Paula Dobrinić

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IL-4 triggers alternative activation of dendritic cells by Cook, Peter C., Jones, Lucy H., Phythian-Adams, Alex T., Lundie, Rachel J., Allen, Judi E., MacDonald, Andrew S.

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Promoter methylation of the MGAT3 and BACH2 genes correlates with the composition of the immunoglobulin G glycome in inflammatory bowel disease by Klasić, Marija, Markulin, Dora, Vojta, Aleksandar, Samaržija, Ivana, Biruš, Ivan, Dobrinić, Paula, Ventham, Nicholas T, Trbojević-Akmačić, Irena, Šimurina, Mirna, Štambuk, Jerko, Razdorov, Genadij, Kennedy, Nicholas A, Satsangi, Jack, Dias, Ana M, Pinho, Salome, Annese, Vito, Latiano, Anna, D'Inca, Renata, Lauc, Gordan, Zoldoš, Vlatka

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The prevalence and transcriptional activity of the mucosal microbiota of ulcerative colitis patients by Moen, Aina E. Fossum, Lindstrøm, Jonas Christoffer, Tannæs, Tone Møller, Vatn, Simen, Ricanek, Petr, Vatn, Morten H., Jahnsen, Jørgen

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Fecal microbiota profiles in treatment-naive pediatric inflammatory bowel disease ? associations with disease phenotype, treatment, and outcome by Olbjørn, Christine, Småstuen, Milada Cvancarova, Thiis-Evensen, Espen, Nakstad, Britt, Vatn, Morten H, Jahnsen, Jørgen, Ricanek, Petr, Vatn, Simen Svendsen, Moen, Aina Elisabeth Fossum, Tannæs, Tone Møller, Lindstrøm, Jonas Christoffer, Söderholm, Johan D, Halfvarson, Jonas, Gomollón, Fernando, Casén, Christina, Karlsson, Magdalena Kauczynska, Kalla, Rahul, Adams, Alex T, Satsangi, Jack, Perminow, Gøri Margrete

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Network analysis reveals distinct clinical syndromes underlying acute mountain sickness by Hall, David P, MacCormick, Ian JC, Phythian-Adams, Alex T, Rzechorzek, Nina M, Hope-Jones, David, Cosens, Sorrel, Jackson, Stewart, Bates, Matthew GD, Collier, David J, Hume, David A, Freeman, Thomas, Thompson, AA Roger, Baillie, J Kenneth

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Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish by Jacobs, Arne, Carruthers, Madeleine, Yurchenko, Andrey, Gordeeva, Natalia V, Alekseyev, Sergey S, Hooker, Oliver, Leong, Jong S, Minkley, David R, Rondeau, Eric B, Koop, Ben F, Adams, Colin E, Elmer, Kathryn R

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