An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma by Hakimi, A. Ari, Reznik, Ed, Lee, Chung-Han, Creighton, Chad J., Brannon, A. Rose, Luna, Augustin, Aksoy, B. Arman, Liu, Eric Minwei, Shen, Ronglai, Lee, William, Chen, Yang, Stirdivant, Steve M., Russo, Paul, Chen, Ying-Bei, Tickoo, Satish K., Reuter, Victor E., Cheng, Emily H., Sander, Chris, Hsieh, James J.

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pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data by Vanderkam, Dan, Aksoy, B Arman, Hodes, Isaac, Perrone, Jaclyn, Hammerbacher, Jeff

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Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer by O'Donnell, Timothy, Christie, Elizabeth L, Ahuja, Arun, Buros, Jacqueline, Aksoy, B Arman, Bowtell, David D L, Snyder, Alexandra, Hammerbacher, Jeff

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Mutations in an Innate Immunity Pathway Are Associated with Poor Overall Survival Outcomes and Hypoxic Signaling in Cancer by Olcina, Monica M., Balanis, Nikolas G., Kim, Ryan K., Aksoy, B. Arman, Kodysh, Julia, Thompson, Michael J., Hammerbacher, Jeff, Graeber, Thomas G., Giaccia, Amato J.

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Genomic Classification of Cutaneous Melanoma by Aksoy, B. Arman, Amin, Samirkumar B., Bartlett, John, Behera, Madhusmita, Bernard, Brady, Boice, Lori, Brzezinski, Jakub, Cappellini, Giancarlo Antonini, Chevalier, Aaron, Cho, Juok, Cho, Raymond J., Chudamani, Sudha, Clarke, Amanda, Coons, Stephen, Cope, Leslie, Davidsen, Tanja, Davies, Michael A., Delman, Keith A., Dhalla, Noreen, Dubina, Michael, Ebrom, J. Stephen, Eley, Greg, Gao, Jianjiong, Gardner, Johanna, Garraway, Levi A., Gastier-Foster, Julie M., Gaudioso, Carmelo, Getz, Gad, Gomez-Fernandez, Carmen, Hadjipanayis, Angela, Halaban, Ruth, Hayes, D. Neil, Hoadley, Katherine A., Huang, Mei, Jones, Steven J.M., Ju, Zhenlin, Kim, Jaegil, Kirkwood, John M., Krauthammer, Michael, Kwong, Lawrence N., Ladanyi, Marc, Łaźniak, Radoslaw, Lee, Darlene, Liu, Jia, Liu, Wenbin, Long, Georgina V., Ma, Singer, Manikhas, Georgy M., Mann, Graham J., Mayo, Michael, Mehrabi, Sousan, Meng, Shaowu, Meyerson, Matthew, Mieczkowski, Piotr A., Miller, Martin L., Moschos, Stergios, Murawa, Dawid, Ozenberger, Bradley A., Parfitt, Jeremy, Perou, Charles M., Pihl, Todd D., Quinn, Michael J., Radenbaugh, Amie, Ramirez, Nilsa C., Ramirez, Ricardo, Ren, Xiaojia, Reynolds, Sheila M., Robertson, A. Gordon, Roszik, Jason, Saller, Charles, Santoso, Netty, Schein, Jacqueline E., Scolyer, Richard A., Sekhar, Pedamallu Chandra, Shannon, Kerwin F., Sharpless, Norman E., Shelton, Candace, Sheth, Margi, Shi, Yan, Sica, Gabriel L., Sofia, Heidi J., Spillane, Andrew J., Stuart, Joshua, Sun, Yichao, Tam, Angela, Veluvolu, Umadevi, Voronina, Olga, Walter, Vonn, Wan, Yunhu, Watson, Ian R., White, Peter, Wilkerson, Matthew D., Wu, Junyuan, Xu, Andrew Wei, Yang, Da, Yang, Liming, Yang, Lixing, Zhang, Hailei, Zhang, Jianhua, Zmuda, Erik

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Integrated Genomic Characterization of Papillary Thyroid Carcinoma by Akbani, Rehan, Aksoy, B. Arman, Ally, Adrian, Balasundaram, Miruna, Bernard, Brady, Beroukhim, Rameen, Black, Aaron D., Bodenheimer, Tom, Bowen, Jay, Bristow, Christopher A., Brookens, Robin, Buda, Elizabeth, Butterfield, Yaron S.N., Carty, Sally E., Chin, Lynda, Chuah, Eric, Cibulskis, Kristian, Clarke, Amanda, Clayman, Gary L., Cope, Leslie, Copland, John A., Davidsen, Tanja, Dhir, Rajiv, Dresdner, Gideon, Eldridge, Jonathan, Eley, Greg, El-Naggar, Adel K., Fisher, Sheila, Garraway, Levi A., Getz, Gad, Gehlenborg, Nils, Gibbs, Richard A., Gomez-Hernandez, Karen, Guin, Ranabir, Harper, Hollie A., Heiman, David I., Herman, James G., Hoadley, Katherine A., Hofree, Matan, Holt, Robert A., Hoyle, Alan P., Huang, Franklin W., Ideker, Trey, Kasaian, Katayoon, Khuri, Fadlo R., Kramer, Roger, Ladanyi, Marc, Lander, Eric, Lawrence, Michael S., Lee, Darlene, Leraas, Kristen M., Ling, Shiyun, Liu, Wenbin, LiVolsi, Virginia A., Ma, Yussanne, Mahadeshwar, Harshad S., Mills, Gordon, Mose, Lisle E., Murray, Bradley A., Noble, Michael S., Owonikoko, Taofeek K., Pantazi, Angeliki, Pedamallu, Chandra Sekhar, Perou, Charles M., Prins, Jan F., Ren, Xiaojia, Reynolds, Sheila M., Robertson, A. Gordon, Rosenberg, Mara W., Rosenthal, Matthew, Schein, Jacqueline E., Seethala, Raja R., Shaw, Kenna R. Mills, Sheth, Margi, Shi, Yan, Sica, Gabriel L., Sipahimalani, Payal, Smallridge, Robert C., Sofia, Heidi J., Stuart, Joshua M., Sumer, S. Onur, Tam, Angela, Tarnuzzer, Roy, Thiessen, Nina, Thorne, Leigh, Thorsson, Vésteinn, Vandin, Fabio, Veluvolu, Umadevi, Vinco, Michelle, Voet, Doug, Weinhold, Nils, Wheeler, David, Wilson, Jocelyn, Williams, Michelle, Xu, Andrew W., Yang, Liming, Yang, Lixing, Zeng, Dong, Zhang, Jiashan (Julia), Zmuda, Erik

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Comprehensive molecular characterization of urothelial bladder carcinoma by Weinstein, John N, Akbani, Rehan, Broom, Bradley M, Wang, Wenyi, Verhaak, Roeland G. W, McConkey, David

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Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin by Hoadley, Katherine A., Yau, Christina, Wolf, Denise M., Cherniack, Andrew D., Tamborero, David, Ng, Sam, Leiserson, Max D.M., Niu, Beifang, McLellan, Michael D., Uzunangelov, Vladislav, Zhang, Jiashan, Kandoth, Cyriac, Akbani, Rehan, Shen, Hui, Omberg, Larsson, Chu, Andy, Margolin, Adam A., van’t Veer, Laura J., Lopez-Bigas, Nuria, Laird, Peter W., Raphael, Benjamin J., Ding, Li, Robertson, A. Gordon, Byers, Lauren A., Mills, Gordon B., Weinstein, John N., Van Waes, Carter, Chen, Zhong, Collisson, Eric A., Benz, Christopher C., Perou, Charles M., Stuart, Joshua M.

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The Somatic Genomic Landscape of Glioblastoma by Brennan, Cameron W., Noushmehr, Houtan, Salama, Sofie R., Berman, Samuel H., Beroukhim, Rameen, Wu, Chang-Jiun, Yung, W.K., Sougnez, Carrie, Finocchiaro, Gaetano, O’Neill, Brian P., Myers, Jerome, Weisenberger, Daniel J., Penny, Robert, Marra, Marco, Meyerson, Matthew, Chin, Lynda, Ostrom, Quinn, Wolinsky, Yingli, Black, Keith L., Boulos, Madgy, Brown, Jenn, Czerinski, Christine, Koyfman, Yakov, Rabeno, Brenda, Auman, J.Todd, Lee, Semin, Kalkanis, Steven, Mikkelsen, Tom, Scarpace, Lisa, Reynolds, Sheila, Curley, Erin, Morris, Scott, Yena, Peggy, Cuppini, Lucia, Maderna, Emanuela, Pollo, Bianca, Hoadley, Katherine A., Shi, Yan, Topal, Michael D., Aksoy, B. Arman, Antipin, Yevgeniy, Borsu, Laetitia, Brennan, Cameron W., Gao, Jianjiong, Jacobsen, Anders, Ladanyi, Marc, Lash, Alex, Liang, Yupu, Chen, Qing-Rong, Shaw, Kenna R. Mills, Eckman, John, Eley, Greg, Jensen, Mark A., Kahn, Ari, Pot, David A., Wan, Yunhu, Hansen, Nathan, Hothi, Parvi, Lau, Ching, Cherniack, Andrew D., Noble, Mike, Cibulskis, Kristian, Frazer, Scott, Gabriel, Stacey B., Gehlenborg, Nils, Gentry, Jeff, Heiman, David, Lander, Eric S., Mallard, Will, Meyerson, Matthew, Getz, Gad, Dees, Nathan N., Fulton, Robert S., Kanchi, Krishna-Latha, Devine, Karen, Carlin, Daniel, Ellrott, Kyle, Haussler, David, Ng, Sam, Salama, Sofie R., Waltman, Peter, Zhu, Jing, Frentzen, Barbara, Friedman, William, McTiernan, Raquel, Perou, Charles M., Akbani, Rehan, Aldape, Kenneth, Bogler, Oliver, Fuller, Gregory N., Mills, Gordon, Protopopov, Alexei, Wu, Chang-Jiun, Weinstein, John N., Verhaak, Roel G.W., Noushmehr, Houtan, Triche, Timothy J., Laird, Peter W., VanMeir, Erwin G., Brat, Daniel

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Abstract 4271: The cBioPortal for Cancer Genomics as a clinical decision support tool by Gao, JianJiong, Aksoy, B. Arman, Gross, Benjamin, Dresdner, Gideon, Sun, Yichao, Sumer, S. Onur, Sander, Chris, Schultz, Nikolaus

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Anti-CTLA4 activates intratumoral NK cells and combination with IL15/IL15Rα complexes enhances tumor control by Sanseviero, Emilio, O’Brien, Erin M., Karras, Jenna R., Shabaneh, Tamer B., Aksoy, B. Arman, Xu, Wei, Zheng, Cathy, Yin, Xiangfan, Xu, Xiaowei, Karakousis, Giorgos, Amaravadi, Ravi, Nam, Brian T., Turk, Mary Jo, Hammerbacher, Jeffrey E., Schuchter, Lynn, Mitchell, Tara C., Liu, Qin, Stone, Erica L.

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Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal by Gao, Jianjiong, Aksoy, Bülent Arman, Dogrusoz, Ugur, Dresdner, Gideon, Gross, Benjamin, Sumer, S Onur, Sun, Yichao, Jacobsen, Anders, Sinha, Rileen, Larsson, Erik, Cerami, Ethan, Sander, Chris, Schultz, Nikolaus

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Perturbation biology nominates upstream-downstream drug combinations in RAF inhibitor resistant melanoma cells by Korkut, Anil, Wang, Weiqing, Demir, Emek, Aksoy, Bülent Arman, Jing, Xiaohong, Molinelli, Evan J, Babur, Özgün, Bemis, Debra L, Onur Sumer, Selcuk, Solit, David B, Pratilas, Christine A, Sander, Chris

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Anti-CTLA-4 Activates Intratumoral NK Cells and Combined with IL15/IL15Rα Complexes Enhances Tumor Control by Sanseviero, Emilio, O'Brien, Erin M, Karras, Jenna R, Shabaneh, Tamer B, Aksoy, Bulent Arman, Xu, Wei, Zheng, Cathy, Yin, Xiangfan, Xu, Xiaowei, Karakousis, Giorgos C, Amaravadi, Ravi K, Nam, Brian, Turk, Mary Jo, Hammerbacher, Jeff, Rubinstein, Mark P, Schuchter, Lynn M, Mitchell, Tara C, Liu, Qin, Stone, Erica L

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WS11.1 The anxiety levels of children with cystic fibrosis and healthy children during the COVID-19 pandemic by Ergenekon, A.P., Cenk, M., Yilmaz Yegit, C., Yuksel, M., Guliyeva, A., Toksoy Aksoy, A., Bilicen, G., Gokdemir, Y., Erdem Eralp, E., Rodopman Arman, A., Karakoc, F., Karadag, B.

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Progressively enhancing stemness of adoptively transferred T cells with PI3Kδ blockade improves metabolism and anti-tumor immunity by Rangel Rivera, Guillermo O, Dwyer, Connor J, Knochelmann, Hannah M, Smith, Aubrey S, Aksoy, Bülent Arman, Cole, Anna C, Wyatt, Megan M, Kumaresan, Soundharya, Thaxton, Jessica E, Lesinski, Gregory B, Paulos, Chrystal M

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