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Large Variation in the Ratio of Mitochondrial to Nuclear Mutation Rate across Animals: Implications for Genetic Diversity and the Use of Mitochondrial DNA as a Molecular Marker
by
Allio, Remi
,
Donega, Stefano
,
Galtier, Nicolas
,
Nabholz, Benoit
Published in
Molecular biology and evolution
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Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
by
Coiro, Mario
,
Allio, Rémi
,
Mazet, Nathan
,
Seyfullah, Leyla J
,
Condamine, Fabien L
Published in
The New phytologist
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OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics
by
Allio, Rémi
,
Delsuc, Frédéric
,
Belkhir, Khalid
,
Douzery, Emmanuel J P
,
Ranwez, Vincent
,
Scornavacca, Céline
Published in
Nucleic acids research
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PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets
by
Comte, Aurore
,
Tricou, Théo
,
Tannier, Eric
,
Joseph, Julien
,
Siberchicot, Aurélie
,
Penel, Simon
,
Allio, Rémi
,
Delsuc, Frédéric
,
Dray, Stéphane
,
de Vienne, Damien M
Published in
Molecular biology and evolution
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MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics
by
Allio, Rémi
,
Schomaker‐Bastos, Alex
,
Romiguier, Jonathan
,
Prosdocimi, Francisco
,
Nabholz, Benoit
,
Delsuc, Frédéric
Published in
Molecular ecology resources
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A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae)
by
Condamine, Fabien L.
,
Allio, Rémi
,
Reboud, Eliette L.
,
Dupuis, Julian R.
,
Toussaint, Emmanuel F.A.
,
Mazet, Nathan
,
Hu, Shao-Ji
,
Lewis, Delano S.
,
Kunte, Krushnamegh
,
Cotton, Adam M.
,
Sperling, Felix A.H.
Published in
Molecular phylogenetics and evolution
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Pangolin Genomes Offer Key Insights and Resources for the World’s Most Trafficked Wild Mammals
by
Heighton, Sean P
,
Allio, Rémi
,
Murienne, Jérôme
,
Salmona, Jordi
,
Meng, Hao
,
Scornavacca, Céline
,
Bastos, Armanda D S
,
Njiokou, Flobert
,
Pietersen, Darren W
,
Tilak, Marie-Ka
,
Luo, Shu-Jin
,
Delsuc, Frédéric
,
Gaubert, Philippe
Published in
Molecular biology and evolution
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Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants
by
Allio, Rémi
,
Nabholz, Benoit
,
Wanke, Stefan
,
Chomicki, Guillaume
,
Pérez-Escobar, Oscar A.
,
Cotton, Adam M.
,
Clamens, Anne-Laure
,
Kergoat, Gaël J.
,
Sperling, Felix A. H.
,
Condamine, Fabien L.
Published in
Nature communications
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High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox
by
Allio, Rémi
,
Tilak, Marie-Ka
,
Scornavacca, Celine
,
Avenant, Nico L
,
Kitchener, Andrew C
,
Corre, Erwan
,
Nabholz, Benoit
,
Delsuc, Frédéric
Published in
eLife
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Whole Genome Shotgun Phylogenomics Resolves the Pattern and Timing of Swallowtail Butterfly Evolution
by
Allio, Rémi
,
Scornavacca, Céline
,
Nabholz, Benoit
,
Clamens, Anne-Laure
,
Sperling, Felix A.H.
,
Condamine, Fabien L.
Published in
Systematic biology
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Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of broodsite pollination mutualism in true weevils
by
Haran, J.
,
Li, X.
,
Allio, Rémi
,
Shin, S.
,
Benoit, L.
,
Oberprieler, R. G.
,
Farrell, B. D.
,
Brown, S. D. J.
,
Leschen, R. A. B.
,
Kergoat, G. J.
,
Mc Kenna, D. D.
Published in
Proceedings of the Royal Society. B, Biological sciences
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Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America
by
Perrier, Charles
,
Allio, Rémi
,
Legeai, Fabrice
,
Gautier, Mathieu
,
Bénéluz, Frédéric
,
Marande, William
,
Theron, Anthony
,
Rodde, Nathalie
,
Herrera, Melfran
,
Saune, Laure
,
Parrinello, Hugues
,
Mcclure, Melanie
,
Arias, Mónica
Published in
The Journal of heredity
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