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Reconstruction of Natural RNA Sequences from RNA Shape, Thermodynamic Stability, Mutational Robustness, and Linguistic Complexity by Evolutionary Computation
by
Dromi, N.
,
Avihoo, A.
,
Barash, D.
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Journal of biomolecular structure & dynamics
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Shape Similarity Measures for the Design of Small RNA Switches
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Avihoo, Assaf
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Barash, Danny
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Journal of biomolecular structure & dynamics
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Fine-grain matrix graph representation for predicting mutations leading to conformational rearrangements in small RNAs
by
Avihoo, A.
,
Dromi, N.
,
Barash, D.
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In Silico Design of Small RNA Switches
by
Avihoo, A.
,
Gabdank, I.
,
Shapira, M.
,
Barash, D.
Published in
IEEE transactions on nanobioscience
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Temperature and mutation switches in the secondary structure of small RNAs
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Avihoo, A.
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Barash, D.
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RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences
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Avihoo, Assaf
,
Churkin, Alexander
,
Barash, Danny
Published in
BMC bioinformatics
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RNAfbinv: an interactive Java application for fragment-based design of RNA sequences
by
Weinbrand, Lina
,
Avihoo, Assaf
,
Barash, Danny
Published in
Bioinformatics
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RNAthermsw: direct temperature simulations for predicting the location of RNA thermometers
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Churkin, Alexander
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Avihoo, Assaf
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Shapira, Michal
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Barash, Danny
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PloS one
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An image processing approach to computing distances between RNA secondary structures dot plots
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Ivry, Tor
,
Michal, Shahar
,
Avihoo, Assaf
,
Sapiro, Guillermo
,
Barash, Danny
Published in
Algorithms for molecular biology
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RNAthermsw: Direct Temperature Simulations for Predicting the Location of RNA Thermometers: e94340
by
Churkin, Alexander
,
Avihoo, Assaf
,
Shapira, Michal
,
Barash, Danny
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PloS one
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