Challenges in Curating 2D Multimedia Data in the Application of Machine Learning in Biodiversity Image Analysis by Bakış, Yasin, Wang, Xiaojun, Bart, Hank

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Application of AI-Helped Image Classification of Fish Images: An iDigBio dataset example by Altintas, Bahadir, Bakış, Yasin, Wang, Xiojun, Bart, Henry

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A FAIR and modular image‐based workflow for knowledge discovery in the emerging field of imageomics by Balk, Meghan A., Bradley, John, Maruf, M., Altintaş, Bahadir, Bakiş, Yasin, Bart, Henry L., Breen, David, Florian, Christopher R., Greenberg, Jane, Karpatne, Anuj, Karnani, Kevin, Mabee, Paula, Pepper, Joel, Jebbia, Dom, Tabarin, Thibault, Wang, Xiaojun, Lapp, Hilmar

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Computational metadata generation methods for biological specimen image collections by Karnani, Kevin, Pepper, Joel, Bakiş, Yasin, Wang, Xiaojun, Bart Jr, Henry, Breen, David E., Greenberg, Jane

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High Epstein-Barr Virus Load and Genomic Diversity Are Associated with Generation of gp350-Specific Neutralizing Antibodies following Acute Infectious Mononucleosis by Weiss, Eric R, Alter, Galit, Ogembo, Javier Gordon, Henderson, Jennifer L, Tabak, Barbara, Bakiş, Yasin, Somasundaran, Mohan, Garber, Manuel, Selin, Liisa, Luzuriaga, Katherine

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On Image Quality Metadata, FAIR in ML, AI-Readiness and Reproducibility: Fish-AIR example by Bakış, Yasin, Wang, Xiaojun, Altıntaş, Bahadır, Jebbia, Dom, Bart Jr, Henry

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Extracting Landmark and Trait Information from Segmented Digital Specimen Images Generated by Artificial Neural Networks by Bakış, Yasin, Altıntaş, Bahadır, Wang, Xiaojun, Maruf, M., Karpatne, Anuj, Bart, Henry

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Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. using the relative complexity measure by Bakış, Yasin, Otu, Hasan H, Taşçı, Nivart, Meydan, Cem, Bilgin, Neş'e, Yüzbaşıoğlu, Sırrı, Sezerman, O Uğur

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Physico-chemical properties of DNA in phylogeny construction by Bakış, Yasin, Sezerman, O Uğur, Otu, Hasan H

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Toward a Flexible Metadata Pipeline for Fish Specimen Images by Jebbia, Dom, Wang, Xiaojun, Bakis, Yasin, Bart, Henry L, Greenberg, Jane

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Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution by Khurana, Mridul, Daw, Arka, Maruf, M, Uyeda, Josef C, Dahdul, Wasila, Charpentier, Caleb, Yasin Bakış, Bart, Henry L, Mabee, Paula M, Lapp, Hilmar, Balhoff, James P, Wei-Lun, Chao, Stewart, Charles, Berger-Wolf, Tanya, Karpatne, Anuj

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Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images by Kazi, Sajeed Mehrab, Maruf, M, Daw, Arka, Harish Babu Manogaran, Neog, Abhilash, Khurana, Mridul, Altintas, Bahadir, Bakis, Yasin, Campolongo, Elizabeth G, Thompson, Matthew J, Wang, Xiaojun, Lapp, Hilmar, Wei-Lun, Chao, Mabee, Paula M, Bart, Henry L, Dahdul, Wasila, Karpatne, Anuj

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VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images by Maruf, M, Daw, Arka, Kazi, Sajeed Mehrab, Harish Babu Manogaran, Neog, Abhilash, Sawhney, Medha, Khurana, Mridul, Balhoff, James P, Bakis, Yasin, Altintas, Bahadir, Thompson, Matthew J, Campolongo, Elizabeth G, Uyeda, Josef C, Lapp, Hilmar, Bart, Henry L, Mabee, Paula M, Su, Yu, Wei-Lun, Chao, Stewart, Charles, Berger-Wolf, Tanya, Dahdul, Wasila, Karpatne, Anuj

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Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks by Elhamod, Mohannad, Khurana, Mridul, Harish Babu Manogaran, Uyeda, Josef C, Balk, Meghan A, Dahdul, Wasila, Yasin Bakış, Bart, Henry L, Mabee, Paula M, Lapp, Hilmar, Balhoff, James P, Charpentier, Caleb, Carlyn, David, Wei-Lun, Chao, Stewart, Charles V, Rubenstein, Daniel I, Berger-Wolf, Tanya, Karpatne, Anuj

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