Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification by Malboeuf, Christine M., Yang, Xiao, Charlebois, Patrick, Qu, James, Berlin, Aaron M., Casali, Monica, Pesko, Kendra N., Boutwell, Christian L., DeVincenzo, John P., Ebel, Gregory D., Allen, Todd M., Zody, Michael C., Henn, Matthew R., Levin, Joshua Z.

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data by Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J, Burton, Joshua N, Walker, Bruce J, Sharpe, Ted, Hall, Giles, Shea, Terrance P, Sykes, Sean, Berlin, Aaron M, Aird, Daniel, Costello, Maura, Daza, Riza, Williams, Louise, Nicol, Robert, Gnirke, Andreas, Nusbaum, Chad, Lander, Eric S, Jaffe, David B

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Whole genome amplification and de novo assembly of single bacterial cells by Rodrigue, Sébastien, Malmstrom, Rex R, Berlin, Aaron M, Birren, Bruce W, Henn, Matthew R, Chisholm, Sallie W

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A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries by Fisher, Sheila, Barry, Andrew, Abreu, Justin, Minie, Brian, Nolan, Jillian, Delorey, Toni M, Young, Geneva, Fennell, Timothy J, Allen, Alexander, Ambrogio, Lauren, Berlin, Aaron M, Blumenstiel, Brendan, Cibulskis, Kristian, Friedrich, Dennis, Johnson, Ryan, Juhn, Frank, Reilly, Brian, Shammas, Ramy, Stalker, John, Sykes, Sean M, Thompson, Jon, Walsh, John, Zimmer, Andrew, Zwirko, Zac, Gabriel, Stacey, Nicol, Robert, Nusbaum, Chad

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Finished bacterial genomes from shotgun sequence data by Ribeiro, Filipe J, Przybylski, Dariusz, Yin, Shuangye, Sharpe, Ted, Gnerre, Sante, Abouelleil, Amr, Berlin, Aaron M, Montmayeur, Anna, Shea, Terrance P, Walker, Bruce J, Young, Sarah K, Russ, Carsten, Nusbaum, Chad, MacCallum, Iain, Jaffe, David B

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In vivo multiplexed interrogation of amplified genes identifies GAB2 as an ovarian cancer oncogene by Dunn, Gavin P., Cheung, Hiu Wing, Agarwalla, Pankaj K., Thomas, Sapana, Zektser, Yulia, Karst, Alison M., Boehm, Jesse S., Weir, Barbara A., Berlin, Aaron M., Zou, Lihua, Getz, Gad, Liu, Joyce F., Hirsch, Michelle, Vazquez, Francisca, Root, David E., Beroukhim, Rameen, Drapkin, Ronny, Hahn, William C.

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Analysis of high-throughput sequencing and annotation strategies for phage genomes by Henn, Matthew R, Sullivan, Matthew B, Stange-Thomann, Nicole, Osburne, Marcia S, Berlin, Aaron M, Kelly, Libusha, Yandava, Chandri, Kodira, Chinnappa, Zeng, Qiandong, Weiand, Michael, Sparrow, Todd, Saif, Sakina, Giannoukos, Georgia, Young, Sarah K, Nusbaum, Chad, Birren, Bruce W, Chisholm, Sallie W

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The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease by Peng, Xinxia, Alföldi, Jessica, Gori, Kevin, Eisfeld, Amie J, Tyler, Scott R, Tisoncik-Go, Jennifer, Brawand, David, Law, G Lynn, Skunca, Nives, Hatta, Masato, Gasper, David J, Kelly, Sara M, Chang, Jean, Thomas, Matthew J, Johnson, Jeremy, Berlin, Aaron M, Lara, Marcia, Russell, Pamela, Swofford, Ross, Turner-Maier, Jason, Young, Sarah, Hourlier, Thibaut, Aken, Bronwen, Searle, Steve, Sun, Xingshen, Yi, Yaling, Suresh, M, Tumpey, Terrence M, Siepel, Adam, Wisely, Samantha M, Dessimoz, Christophe, Kawaoka, Yoshihiro, Birren, Bruce W, Lindblad-Toh, Kerstin, Di Palma, Federica, Engelhardt, John F, Palermo, Robert E, Katze, Michael G

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The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations by Keane, Michael, Craig, Thomas, Alföldi, Jessica, Berlin, Aaron M, Johnson, Jeremy, Seluanov, Andrei, Gorbunova, Vera, Di Palma, Federica, Lindblad-Toh, Kerstin, Church, George M, de Magalhães, João Pedro

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Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments by Sullivan, Matthew B., Huang, Katherine H., Ignacio-Espinoza, Julio C., Berlin, Aaron M., Kelly, Libusha, Weigele, Peter R., DeFrancesco, Alicia S., Kern, Suzanne E., Thompson, Luke R., Young, Sarah, Yandava, Chandri, Fu, Ross, Krastins, Bryan, Chase, Michael, Sarracino, David, Osburne, Marcia S., Henn, Matthew R., Chisholm, Sallie W.

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Simultaneous Identification of Cell of Origin, Translocations, and Hotspot Mutations in Diffuse Large B-Cell Lymphoma Using a Single RNA-Sequencing Assay by Crotty, Rory, Hu, Krista, Stevenson, Kristen, Pontius, Maggie Y, Sohani, Aliyah R, Ryan, Russell J H, Rueckert, Erroll, Brauer, Heather A, Hudson, Briana, Berlin, Aaron M, Rodenbaugh, Matt, Licon, Abel, Haimes, Josh, Iafrate, A John, Nardi, Valentina, Louissaint, Abner

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Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification by Malboeuf, Christine M, Yang, Xiao, Charlebois, Patrick, Qu, James, Berlin, Aaron M, Casali, Monica, Pesko, Kendra N, Boutwell, Christian L, DeVincenzo, John P, Ebel, Gregory D, Allen, Todd M, Zody, Michael C, Henn, Matthew R, Levin, Joshua Z

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Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus by Andersen, Kristian G., Shapiro, B. Jesse, Matranga, Christian B., Sealfon, Rachel, Lin, Aaron E., Moses, Lina M., Folarin, Onikepe A., Goba, Augustine, Odia, Ikponmwonsa, Ehiane, Philomena E., Momoh, Mambu, England, Eleina M., Winnicki, Sarah, Branco, Luis M., Gire, Stephen K., Phelan, Eric, Tariyal, Ridhi, Tewhey, Ryan, Omoniwa, Omowunmi, Fullah, Mohammed, Fonnie, Richard, Fonnie, Mbalu, Kanneh, Lansana, Jalloh, Simbirie, Gbakie, Michael, Saffa, Sidiki, Karbo, Kandeh, Gladden, Adrianne D., Qu, James, Stremlau, Matthew, Nekoui, Mahan, Finucane, Hilary K., Tabrizi, Shervin, Vitti, Joseph J., Birren, Bruce, Fitzgerald, Michael, McCowan, Caryn, Ireland, Andrea, Berlin, Aaron M., Bochicchio, James, Tazon-Vega, Barbara, Lennon, Niall J., Ryan, Elizabeth M., Bjornson, Zach, Milner, Danny A., Lukens, Amanda K., Broodie, Nisha, Rowland, Megan, Heinrich, Megan, Akdag, Marjan, Schieffelin, John S., Levy, Danielle, Akpan, Henry, Bausch, Daniel G., Rubins, Kathleen, McCormick, Joseph B., Lander, Eric S., Günther, Stephan, Hensley, Lisa, Okogbenin, Sylvanus, Schaffner, Stephen F., Okokhere, Peter O., Khan, S. Humarr, Grant, Donald S., Akpede, George O., Asogun, Danny A., Gnirke, Andreas, Levin, Joshua Z., Happi, Christian T., Garry, Robert F., Sabeti, Pardis C.

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The application of next-generation sequencing-based molecular diagnostics in endometrial stromal sarcoma by Li, Xiaodong, Anand, Mona, Haimes, Josh D, Manoj, Namitha, Berlin, Aaron M, Kudlow, Brian A, Nucci, Marisa R, Ng, Tony L, Stewart, Colin J R, Lee, Cheng-Han

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Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergen... by Manning, Viola A, Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J, Goodwin, Stephen B, Berlin, Aaron M, Figueroa, Melania, Freitag, Michael, Hane, James K, Henrissat, Bernard, Holman, Wade H, Kodira, Chinnappa D, Martin, Joel, Oliver, Richard P, Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C, Spatafora, Joseph W, Turgeon, B Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V, Ma, Li-Jun, Ciuffetti, Lynda M

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Paired-end sequencing of Fosmid libraries by Illumina by Williams, Louise J S, Tabbaa, Diana G, Li, Na, Berlin, Aaron M, Shea, Terrance P, Maccallum, Iain, Lawrence, Michael S, Drier, Yotam, Getz, Gad, Young, Sarah K, Jaffe, David B, Nusbaum, Chad, Gnirke, Andreas

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The African coelacanth genome provides insights into tetrapod evolution by Amemiya, Chris T., Alföldi, Jessica, Lee, Alison P., Fan, Shaohua, Philippe, Hervé, MacCallum, Iain, Braasch, Ingo, Manousaki, Tereza, Schneider, Igor, Rohner, Nicolas, Organ, Chris, Chalopin, Domitille, Smith, Jeramiah J., Robinson, Mark, Dorrington, Rosemary A., Gerdol, Marco, Aken, Bronwen, Biscotti, Maria Assunta, Barucca, Marco, Baurain, Denis, Berlin, Aaron M., Blatch, Gregory L., Buonocore, Francesco, Burmester, Thorsten, Campbell, Michael S., Canapa, Adriana, Cannon, John P., Christoffels, Alan, De Moro, Gianluca, Edkins, Adrienne L., Fan, Lin, Fausto, Anna Maria, Feiner, Nathalie, Forconi, Mariko, Gamieldien, Junaid, Gnerre, Sante, Gnirke, Andreas, Goldstone, Jared V., Haerty, Wilfried, Hahn, Mark E., Hesse, Uljana, Hoffmann, Steve, Johnson, Jeremy, Karchner, Sibel I., Kuraku, Shigehiro, Lara, Marcia, Levin, Joshua Z., Litman, Gary W., Mauceli, Evan, Miyake, Tsutomu, Mueller, M. Gail, Nelson, David R., Nitsche, Anne, Olmo, Ettore, Ota, Tatsuya, Pallavicini, Alberto, Panji, Sumir, Picone, Barbara, Ponting, Chris P., Prohaska, Sonja J., Przybylski, Dariusz, Saha, Nil Ratan, Ravi, Vydianathan, Ribeiro, Filipe J., Sauka-Spengler, Tatjana, Scapigliati, Giuseppe, Searle, Stephen M. J., Sharpe, Ted, Simakov, Oleg, Stadler, Peter F., Stegeman, John J., Sumiyama, Kenta, Tabbaa, Diana, Tafer, Hakim, Turner-Maier, Jason, van Heusden, Peter, White, Simon, Williams, Louise, Yandell, Mark, Brinkmann, Henner, Volff, Jean-Nicolas, Tabin, Clifford J., Shubin, Neil, Schartl, Manfred, Jaffe, David B., Postlethwait, John H., Venkatesh, Byrappa, Di Palma, Federica, Lander, Eric S., Meyer, Axel, Lindblad-Toh, Kerstin

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A Catalog of Reference Genomes from the Human Microbiome by Nelson, Karen E, Weinstock, George M, Highlander, Sarah K, Worley, Kim C, Creasy, Heather Huot, Wortman, Jennifer Russo, Rusch, Douglas B, Mitreva, Makedonka, Sodergren, Erica, Chinwalla, Asif T, Feldgarden, Michael, Gevers, Dirk, Haas, Brian J, Madupu, Ramana, Ward, Doyle V, Birren, Bruce W, Gibbs, Richard A, Methe, Barbara, Petrosino, Joseph F, Strausberg, Robert L, Sutton, Granger G, White, Owen R, Wilson, Richard K, Durkin, Scott, Giglio, Michelle Gwinn, Gujja, Sharvari, Howarth, Clint, Kodira, Chinnappa D, Kyrpides, Nikos, Mehta, Teena, Muzny, Donna M, Pearson, Matthew, Pepin, Kymberlie, Pati, Amrita, Qin, Xiang, Yandava, Chandri, Zeng, Qiandong, Zhang, Lan, Berlin, Aaron M, Chen, Lei, Hepburn, Theresa A, Johnson, Justin, McCorrison, Jamison, Miller, Jason, Minx, Pat, Nusbaum, Chad, Russ, Carsten, Sykes, Sean M, Tomlinson, Chad M, Young, Sarah, Warren, Wesley C, Badger, Jonathan, Crabtree, Jonathan, Markowitz, Victor M, Orvis, Joshua, Cree, Andrew, Ferriera, Steve, Fulton, Lucinda L, Fulton, Robert S, Gillis, Marcus, Hemphill, Lisa D, Joshi, Vandita, Kovar, Christie, Torralba, Manolito, Wetterstrand, Kris A, Abouellleil, Amr, Wollam, Aye M, Buhay, Christian J, Ding, Yan, Dugan, Shannon, FitzGerald, Michael G, Holder, Mike, Hostetler, Jessica, Clifton, Sandra W, Allen-Vercoe, Emma, Earl, Ashlee M, Farmer, Candace N, Liolios, Konstantinos, Surette, Michael G, Xu, Qiang, Pohl, Craig, Wilczek-Boney, Katarzyna, Zhu, Dianhui

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Comparative Functional Genomics of the Fission Yeasts by Rhind, Nicholas, Chen, Zehua, Yassour, Moran, Thompson, Dawn A., Haas, Brian J., Habib, Naomi, Wapinski, Ilan, Roy, Sushmita, Lin, Michael F., Heiman, David I., Young, Sarah K., Furuya, Kanji, Guo, Yabin, Pidoux, Alison, Chen, Huei Mei, Robbertse, Barbara, Goldberg, Jonathan M., Aoki, Keita, Bayne, Elizabeth H., Berlin, Aaron M., Desjardins, Christopher A., Dobbs, Edward, Dukaj, Livio, Fan, Lin, FitzGerald, Michael G., French, Courtney, Gujja, Sharvari, Hansen, Klavs, Keifenheim, Dan, Levin, Joshua Z., Mosher, Rebecca A., Müller, Carolin A., Pfiffner, Jenna, Priest, Margaret, Russ, Carsten, Smialowska, Agata, Swoboda, Peter, Sykes, Sean M., Vaughn, Matthew, Vengrova, Sonya, Yoder, Ryan, Zeng, Qiandong, Allshire, Robin, Baulcombe, David, Birren, Bruce W., Brown, William, Ekwall, Karl, Kellis, Manolis, Leatherwood, Janet, Levin, Henry, Margalit, Hanah, Martienssen, Rob, Nieduszynski, Conrad A., Spatafora, Joseph W., Friedman, Nir, Dalgaard, Jacob Z., Baumann, Peter, Niki, Hironori, Regev, Aviv, Nusbaum, Chad

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection by Henn, Matthew R, Boutwell, Christian L, Charlebois, Patrick, Lennon, Niall J, Power, Karen A, Macalalad, Alexander R, Berlin, Aaron M, Malboeuf, Christine M, Ryan, Elizabeth M, Gnerre, Sante, Zody, Michael C, Erlich, Rachel L, Green, Lisa M, Berical, Andrew, Wang, Yaoyu, Casali, Monica, Streeck, Hendrik, Bloom, Allyson K, Dudek, Tim, Tully, Damien, Newman, Ruchi, Axten, Karen L, Gladden, Adrianne D, Battis, Laura, Kemper, Michael, Zeng, Qiandong, Shea, Terrance P, Gujja, Sharvari, Zedlack, Carmen, Gasser, Olivier, Brander, Christian, Hess, Christoph, Günthard, Huldrych F, Brumme, Zabrina L, Brumme, Chanson J, Bazner, Suzane, Rychert, Jenna, Tinsley, Jake P, Mayer, Ken H, Rosenberg, Eric, Pereyra, Florencia, Levin, Joshua Z, Young, Sarah K, Jessen, Heiko, Altfeld, Marcus, Birren, Bruce W, Walker, Bruce D, Allen, Todd M

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