Using de novo assembly to identify structural variation of eight complex immune system gene regions by Zhang, Jia-Yuan, Roberts, Hannah, Flores, David S. C, Cutler, Antony J, Brown, Andrew C, Whalley, Justin P, Mielczarek, Olga, Buck, David, Lockstone, Helen, Xella, Barbara, Oliver, Karen, Corton, Craig, Betteridge, Emma, Bashford-Rogers, Rachael, Knight, Julian C, Todd, John A, Band, Gavin

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The gene-rich genome of the scallop Pecten maximus by Kenny, Nathan J, McCarthy, Shane A, Dudchenko, Olga, James, Katherine, Betteridge, Emma, Corton, Craig, Dolucan, Jale, Mead, Dan, Oliver, Karen, Omer, Arina D, Pelan, Sarah, Ryan, Yan, Sims, Ying, Skelton, Jason, Smith, Michelle, Torrance, James, Weisz, David, Wipat, Anil, Aiden, Erez L, Howe, Kerstin, Williams, Suzanne T

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The complete genome sequence of Eimeria tenella (Tyzzer 1929), a common gut parasite of chickens by Aunin, Eerik, Böhme, Ulrike, Blake, Damer, Dove, Alexander, Smith, Michelle, Corton, Craig, Oliver, Karen, Betteridge, Emma, Quail, Michael A., McCarthy, Shane A., Wood, Jonathan, Tracey, Alan, Torrance, James, Sims, Ying, Howe, Kerstin, Challis, Richard, Berriman, Matthew, Reid, Adam

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The genome sequence of the Norway rat, Rattus norvegicus Berkenhout 1769 by Howe, Kerstin, Dwinell, Melinda, Shimoyama, Mary, Corton, Craig, Betteridge, Emma, Dove, Alexander, Quail, Michael A., Smith, Michelle, Saba, Laura, Williams, Robert W., Chen, Hao, Kwitek, Anne E., McCarthy, Shane A., Uliano-Silva, Marcela, Chow, William, Tracey, Alan, Torrance, James, Sims, Ying, Challis, Richard, Threlfall, Jonathan, Blaxter, Mark

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The genome sequence of the brown trout, Salmo trutta Linnaeus 1758 by Hansen, Tom, Fjelldal, Per Gunnar, Lien, Sigbjørn, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Fedrigo, Olivier, Mountcastle, Jacquelyn, Jarvis, Erich, McCarthy, Shane A., Chow, William, Howe, Kerstin, Torrance, James, Wood, Jonathan, Sims, Ying, Haggerty, Leanne, Challis, Richard, Threlfall, Jonathan, Mead, Daniel, Durbin, Richard, Blaxter, Mark

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The genome sequence of the European golden eagle, Aquila chrysaetos chrysaetos Linnaeus 1758 by Mead, Dan, Ogden, Rob, Meredith, Anna, Peniche, Gabriela, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Holmes, Nadine, Wright, Victoria, Loose, Matt, Quail, Michael A., McCarthy, Shane A., Howe, Kerstin, Chow, William, Torrance, James, Collins, Joanna, Challis, Richard, Durbin, Richard, Blaxter, Mark

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The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 by Carpenter, Angus I, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Quail, Michael A, McCarthy, Shane A, Uliano Da Silva, Marcela, Howe, Kerstin, Torrance, James, Wood, Jonathan, Pelan, Sarah, Sims, Ying, Tricomi, Francesca Floriana, Challis, Richard, Threlfall, Jonathan, Mead, Daniel, Blaxter, Mark

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The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758 by Mead, Dan, Hailer, Frank, Chadwick, Elisabeth, Portela Miguez, Roberto, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale Doulcan, Dudchenko, Olga, Omer, Arina, Weisz, David, Lieberman Aiden, Erez, McCarthy, Shane, Howe, Kerstin, Sims, Ying, Torrance, James, Tracey, Alan, Challis, Richard, Durbin, Richard, Blaxter, Mark

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The genome sequence of the eastern grey squirrel, Sciurus carolinensis Gmelin, 1788 by Mead, Dan, Fingland, Kathryn, Cripps, Rachel, Portela Miguez, Roberto, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Quail, Michael A, McCarthy, Shane A, Howe, Kerstin, Sims, Ying, Torrance, James, Tracey, Alan, Challis, Richard, Durbin, Richard, Blaxter, Mark

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The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758 by Mead, Daniel, Fingland, Kathryn, Cripps, Rachel, Portela Miguez, Roberto, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Dolucan, Jale, Dudchenko, Olga, Omer, Arina D, Weisz, David, Lieberman Aiden, Erez, Fedrigo, Olivier, Mountcastle, Jacquelyn, Jarvis, Erich, McCarthy, Shane A, Sims, Ying, Torrance, James, Tracey, Alan, Howe, Kerstin, Challis, Richard, Durbin, Richard, Blaxter, Mark

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The genome sequence of the European turtle dove, Streptopelia turtur Linnaeus 1758 by Dunn, Jenny C, Hamer, Keith C, Morris, Antony J, Grice, Philip V, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Dolucan, Jale, Quail, Michael A, McCarthy, Shane A, Uliano-Silva, Marcela, Howe, Kerstin, Torrance, James, Chow, William, Pelan, Sarah, Sims, Ying, Challis, Richard, Threlfall, Jonathan, Mead, Daniel, Blaxter, Mark

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Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study by Aliabadi, Shirin, Lopez-Bernal, Jamie, Moore, Nathan, Golubchik, Tanya, Cogger, Benjamin, Wantoch, Michelle, Spellman, Karla, McCluggage, Kathryn, Munn, Robert, Fuller, William, Charalampous, Themoula, Robson, Samuel, Abudahab, Khalil, Willingham, Iona, Raviprakash, Veena, Loose, Matthew, Coll, Francesc, Wilson, Harry, Pybus, Oliver, Zarebski, Alex, Jahun, Aminu, Fisher, Chloe, Siveroni, Igor, Boyd, Olivia, Smollett, Katherine, Poplawski, Radoslaw, Sluga, Graciela, Nichols, Jenna, Johnson, Natasha, Singer, Joshua, Nickbakhsh, Seema, Carden, Holli, Taha, Yusri, Blacow, Rachel, McHugh, Martin, Stanley, Rachael, Meader, Emma, Coupland, Lindsay, Peto, Timothy, Sloan, Tim, Chauhan, Anoop, Pearson, Clare, Robinson, Esther, Muir, Peter, Pymont, Hannah, Hutchings, Stephanie, Bibby, David, Lee, David, Ellaby, Nicholas, Manesis, Nikos, Bishop, Chloe, Gaskin, Amy, Gatica-Wilcox, Bree, Cronin, Michelle, Cottrell, Simon, Edwards, Sue, Aydin, Alp, Ratcliffe, Liz, Acheson, Erwan, Ellard, Sian, Irish-Tavares, Dianne, Hart, Jennifer, Symmonds, Amanda, Bourgeois, Yann, Dent, Hannah, Paul, Hannah, Partridge, David, Bonner, Stephen, Silveira, Siona, Williams, Charlotte, Jeremiah, Sarah, Berry, Lisa, Jones, Katie, Percival, Benita, Hesketh, Andrew, Girgis, Sophia, Forrest, Sally, Gupta, Ravi, Ludden, Catherine, Bewshea, Claire, Temperton, Ben, Warwick-Dugdale, Joanna, Studholme, David, Jeffries, Aaron, Jackson, Kathryn, Gregory, Richard, Wierzbicki, Claudia, Green, Luke, Freeman, Timothy, Cerda, Alberto, Alderton, Alex, Amato, Roberto, Ariani, Cristina, Beale, Mathew, Bellis, Katherine, Kwiatkowski, Dominic, McGuigan, Samantha, Prestwood, Liam, Spencer Chapman, Michael, Tonkin-Hill, Gerry

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Genomic reconstruction of the SARS-CoV-2 epidemic in England by Vöhringer, Harald S., Sanderson, Theo, Sinnott, Matthew, De Maio, Nicola, Nguyen, Thuy, Goater, Richard, Schwach, Frank, Harrison, Ian, Hellewell, Joel, Ariani, Cristina V., Gonçalves, Sonia, Jackson, David K., Johnston, Ian, Jung, Alexander W., Saint, Callum, Sillitoe, John, Suciu, Maria, Goldman, Nick, Panovska-Griffiths, Jasmina, Birney, Ewan, Volz, Erik, Funk, Sebastian, Kwiatkowski, Dominic, Chand, Meera, Martincorena, Inigo, Barrett, Jeffrey C., Gerstung, Moritz

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Complete vertebrate mitogenomes reveal widespread repeats and gene duplications by Formenti, Giulio, Rhie, Arang, Balacco, Jennifer, Haase, Bettina, Mountcastle, Jacquelyn, Fedrigo, Olivier, Brown, Samara, Capodiferro, Marco Rosario, Al-Ajli, Farooq O, Ambrosini, Roberto, Houde, Peter, Koren, Sergey, Oliver, Karen, Smith, Michelle, Skelton, Jason, Betteridge, Emma, Dolucan, Jale, Corton, Craig, Bista, Iliana, Torrance, James, Tracey, Alan, Wood, Jonathan, Uliano-Silva, Marcela, Howe, Kerstin, McCarthy, Shane, Winkler, Sylke, Kwak, Woori, Korlach, Jonas, Fungtammasan, Arkarachai, Fordham, Daniel, Costa, Vania, Mayes, Simon, Chiara, Matteo, Horner, David S, Myers, Eugene, Durbin, Richard, Achilli, Alessandro, Braun, Edward L, Phillippy, Adam M, Jarvis, Erich D

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Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study by Graham, Mark S, Sudre, Carole H, Ash, Amy, Moore, Nathan, Golubchik, Tanya, Spellman, Karla, Fuller, William, Nebbia, Gaia, Taylor, Ben EW, Willingham, Iona, Sheriff, Nicola, Moore, Christopher, Debebe, Johnny, Wilson, Harry D, Davis, Thomas, Pybus, Oliver G, Raghwani, Jayna, Heaney, Judith, Smith, Darren L, Jorgensen, David, Siveroni, Igor, Boyd, Olivia, Smollett, Katherine L, Quick, Joshua, Halstead, Fenella, Sivaprakasam, Venkat, Illingworth, Chris J, Jesudason, Natasha G, Johnson, Natasha, Robertson, David L, Taha, Yusri, Blacow, Rachel, McHugh, Martin P, Dewar, Rebecca, Stanley, Rachael, Peto, Timothy, Elliott, Scott, Pearson, Clare, Osman, Husam, Robinson, Esther, Mbisa, Tamyo, Bibby, David, Hubb, Jonathan, Lee, David, Manesis, Nikos, Bishop, Chloe, Shaaban, Sharif, Morgan, Mari, Cronin, Michelle, Corden, Sally, Page, Andrew J, Baker, David J, Meadows, Lizzie, Molnar, Zoltan, Acheson, Erwan, Masoli, Jane AH, Ellard, Sian, Irish-Tavares, Dianne, Dent, Hannah, Partridge, David G, Raza, Mohammad, Evans, Cariad, Essex, Sarah, Silveira, Siona, Jones, Katie, Percival, Benita, Mirza, Jeremy, Ashcroft, Fiona, Bucca, Giselda, Forrest, Sally, Maes, Mailis, Hadjirin, Nazreen F, Balcazar, Carlos E, Hill, Verity, Michell, Stephen L, Manley, Robin, Sambles, Christine M, Hiscox, Julian A, Gregory, Richard, Wierzbicki, Claudia, Lindsey, Benjamin B, Groves, Danielle C, Cheng, Jeffrey K.J., Brown, Paul E, Wilson, Rebekah E, McClure, Patrick C, Alderton, Alex, Amato, Roberto, Beale, Mathew A, Bellis, Katherine L, Harrison, Ewan M, Jackson, David K, Kwiatkowski, Dominic, Livett, Rich, McGuigan, Samantha, Prestwood, Liam, Shirley, Lesley, Tonkin-Hill, Gerry, Bronner, Iraad F, Tovar-Corona, Jaime M

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An integrated national scale SARS-CoV-2 genomic surveillance network by The COVID-19 Genomics UK (COG-UK) consortium

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COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study by Kläser, Kerstin, Molteni, Erika, Graham, Mark, Canas, Liane S., Österdahl, Marc F., Antonelli, Michela, Chen, Liyuan, Deng, Jie, Murray, Benjamin, Kerfoot, Eric, Wolf, Jonathan, May, Anna, Fox, Ben, Capdevila, Joan, Modat, Marc, Hammers, Alexander, Spector, Tim D., Steves, Claire J., Sudre, Carole H., Ourselin, Sebastien, Duncan, Emma L.

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The impact of viral mutations on recognition by SARS-CoV-2 specific T cells by Shah, Dhruv, Mentzer, Alexander J., Aanensen, David M., Adams, Helen, Alcolea-Medina, Adela, Ash, Amy, Atkinson, Laura, Balcazar, Carlos E., Bayzid, Nadua, Bicknell, Kelly, Byott, Matthew, Carabelli, Alessandro M., Chappell, Joseph G., Clarke, Phillip, Cogger, Benjamin J., Cook, Kate F., Coombes, Jason, Curran, Tanya, Davies, Robert M., Dey, Jayasree, Dobie, Donald, Edwards, Sue, Erkiert, Michelle J., Fairley, Derek J., Fanaie, Arezou, Fina, Laia, Fragakis, Mireille, Freeman, Timothy M., George, Ryan P., Goudarzi, Salman, Gutierrez, Bernardo, Hassan-Ibrahim, Mohammed O., Jackson, Leigh M., John, Michaela, Kay, Sally, Kraemer, Moritz U.G., Livett, Rich, Mack, Andrew, McClure, Patrick C., McCrone, J.T., McManus, Georgina M., McNally, Alan, Mondani, Matteo, Moses, Samuel, Nebbia, Gaia, Parmar, Surendra, Pritchard, David T., Pugh, Georgia, Quick, Joshua, Rainbow, Lucille, Rajatileka, Shavanthi, Rey, Sara, Richter, Alex, Robinson, Esther, Scher, Emily, Shah, Divya, Sheridan, Liz A., Wastnedge, Elizabeth, Watkins, Joanne, Whitehead, Mark, Whitwham, Andrew, Williams, Lesley-Anne, Zhang, Peijun, Bach, Benjamin, Barclay, Wendy S., Griffin, Julian L., Horby, Peter W., Khoo, Saye, Mentzer, Alexander J., Stuart, David, Tedder, Richard S., Roberts, Stephanie, Lee, James, Scott-Brown, James, Shaw, Victoria, Ahmed, Katie A., Brennan, Benjamin, Cox, Helen, Garcia-Dorival, Isabel, Lant, Suzannah, Penrice-Randal, Rebekah, Morrice, Kirstie, Bari, Shahedal, Drummond, Andrew, Garg, Sanjeev, Gkrania-Klotsas, Effrossyni, Godden, Jo, Goldsmith, Arthur, Hartshorn, Stuart, Lillie, Patrick, Lyttle, Mark, O'Shea, Matthew K., Pais, Mark, Post, Frank, Richardson, Neil, Sharma, Anil, Spittle, Nick, Stambach, Tom, Waddy, Sam, Whitehouse, Tony

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SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time by Ashford, Fiona, Best, Angus, Dunn, Steven J, Ahmed, Zahra, Siddiqui, Henna, Melville, Jordan, Wilkinson, Samuel, Mirza, Jeremy, Cumley, Nicola, Stockton, Joanne, Ferguson, Jack, Wheatley, Lucy, Ratcliffe, Elizabeth, Casey, Anna, Plant, Tim, Quick, Joshua, Richter, Alex, Loman, Nicholas, McNally, Alan

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Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission by Aggarwal, Dinesh, Page, Andrew J., Schaefer, Ulf, Savva, George M., Myers, Richard, Volz, Erik, Ellaby, Nicholas, Platt, Steven, Groves, Natalie, Gallagher, Eileen, Tumelty, Niamh M., Le Viet, Thanh, Hughes, Gareth J., Chen, Cong, Turner, Charlie, Logan, Sophie, Harrison, Abbie, Peacock, Sharon J., Chand, Meera, Harrison, Ewan M.

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