Pan-PCR, a Computational Method for Designing Bacterium-Typing Assays Based on Whole-Genome Sequence Data by Yang, Joy Y, Brooks, Shelise, Meyer, Jennifer A, Blakesley, Robert R, Zelazny, Adrian M, Segre, Julia A, Snitkin, Evan S

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Topographical and Temporal Diversity of the Human Skin Microbiome by Grice, Elizabeth A, Kong, Heidi H, Conlan, Sean, Deming, Clayton B, Davis, Joie, Young, Alice C, Bouffard, Gerard G, Blakesley, Robert W, Murray, Patrick R, Green, Eric D, Turner, Maria L, Segre, Julia A

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Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates by Conlan, Sean, Mijares, Lilia A, Becker, Jesse, Blakesley, Robert W, Bouffard, Gerard G, Brooks, Shelise, Coleman, Holly, Gupta, Jyoti, Gurson, Natalie, Park, Morgan, Schmidt, Brian, Thomas, Pamela J, Otto, Michael, Kong, Heidi H, Murray, Patrick R, Segre, Julia A

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Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies by Doria-Rose, Nicole A., Schramm, Chaim A., Gorman, Jason, Moore, Penny L., Bhiman, Jinal N., DeKosky, Brandon J., Ernandes, Michael J., Georgiev, Ivelin S., Kim, Helen J., Pancera, Marie, Staupe, Ryan P., Altae-Tran, Han R., Bailer, Robert T., Crooks, Ema T., Cupo, Albert, Druz, Aliaksandr, Garrett, Nigel J., Hoi, Kam H., Kong, Rui, Louder, Mark K., Longo, Nancy S., McKee, Krisha, Nonyane, Molati, O’Dell, Sijy, Roark, Ryan S., Rudicell, Rebecca S., Schmidt, Stephen D., Sheward, Daniel J., Soto, Cinque, Wibmer, Constantinos Kurt, Yang, Yongping, Zhang, Zhenhai, Mullikin, James C., Binley, James M., Sanders, Rogier W., Wilson, Ian A., Moore, John P., Ward, Andrew B., Georgiou, George, Williamson, Carolyn, Abdool Karim, Salim S., Morris, Lynn, Kwong, Peter D., Shapiro, Lawrence, Mascola, John R.

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Gene-based sequencing identifies lipid-influencing variants with ethnicity-specific effects in African Americans by Bentley, Amy R, Chen, Guanjie, Shriner, Daniel, Doumatey, Ayo P, Zhou, Jie, Huang, Hanxia, Mullikin, James C, Blakesley, Robert W, Hansen, Nancy F, Bouffard, Gerard G, Cherukuri, Praveen F, Maskeri, Baishali, Young, Alice C, Adeyemo, Adebowale, Rotimi, Charles N

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Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus by Liao, Hua-Xin, Lynch, Rebecca, Zhou, Tongqing, Gao, Feng, Alam, S. Munir, Boyd, Scott D., Fire, Andrew Z., Roskin, Krishna M., Schramm, Chaim A., Zhang, Zhenhai, Zhu, Jiang, Shapiro, Lawrence, Mullikin, James C., Gnanakaran, S., Hraber, Peter, Wiehe, Kevin, Kelsoe, Garnett, Yang, Guang, Xia, Shi-Mao, Montefiori, David C., Parks, Robert, Lloyd, Krissey E., Scearce, Richard M., Soderberg, Kelly A., Cohen, Myron, Kamanga, Gift, Louder, Mark K., Tran, Lillian M., Chen, Yue, Cai, Fangping, Chen, Sheri, Moquin, Stephanie, Du, Xiulian, Joyce, M. Gordon, Srivatsan, Sanjay, Zhang, Baoshan, Zheng, Anqi, Shaw, George M., Hahn, Beatrice H., Kepler, Thomas B., Korber, Bette T. M., Kwong, Peter D., Mascola, John R., Haynes, Barton F.

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Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis by Kong, Heidi H, Oh, Julia, Deming, Clay, Conlan, Sean, Grice, Elizabeth A, Beatson, Melony A, Nomicos, Effie, Polley, Eric C, Komarow, Hirsh D, Murray, Patrick R, Turner, Maria L, Segre, Julia A

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Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants by Parker, Stephen C. J., Stitzel, Michael L., Taylor, D. Leland, Orozco, Jose Miguel, Erdos, Michael R., Akiyama, Jennifer A., van Bueren, Kelly Lammerts, Chines, Peter S., Narisu, Narisu, Black, Brian L., Visel, Axel, Pennacchio, Len A., Collins, Francis S.

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Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection by Wu, Xueling, Zhang, Zhenhai, Schramm, Chaim A, Joyce, M Gordon, Kwon, Young Do, Zhou, Tongqing, Sheng, Zizhang, Zhang, Baoshan, O'Dell, Sijy, McKee, Krisha, Georgiev, Ivelin S, Chuang, Gwo-Yu, Longo, Nancy S, Lynch, Rebecca M, Saunders, Kevin O, Soto, Cinque, Srivatsan, Sanjay, Yang, Yongping, Bailer, Robert T, Louder, Mark K, Mullikin, James C, Connors, Mark, Kwong, Peter D, Mascola, John R, Shapiro, Lawrence

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A Neutralizing Antibody Recognizing Primarily N-Linked Glycan Targets the Silent Face of the HIV Envelope by Zhou, Tongqing, Zheng, Anqi, Baxa, Ulrich, Chuang, Gwo-Yu, Georgiev, Ivelin S., Kong, Rui, O’Dell, Sijy, Shahzad-ul-Hussan, Syed, Shen, Chen-Hsiang, Tsybovsky, Yaroslav, Bailer, Robert T., Gift, Syna K., Louder, Mark K., McKee, Krisha, Rawi, Reda, Stevenson, Catherine H., Stewart-Jones, Guillaume B.E., Taft, Justin D., Waltari, Eric, Yang, Yongping, Zhang, Baoshan, Shivatare, Sachin S., Shivatare, Vidya S., Lee, Chang-Chun D., Wu, Chung-Yi, Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shiling, Legaspi, Richelle, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Mullikin, James, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Thomas, Pam, Vemulapalli, Meg, Young, Alice, Mullikin, James C., Bewley, Carole A., Burton, Dennis R., Polonis, Victoria R., Shapiro, Lawrence, Wong, Chi-Huey, Mascola, John R., Kwong, Peter D., Wu, Xueling

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De novo identification of VRC01 class HIV-1–neutralizing antibodies by next-generation sequencing of B-cell transcripts by Zhu, Jiang, Wu, Xueling, Zhang, Baoshan, McKee, Krisha, O'Dell, Sijy, Soto, Cinque, Zhou, Tongqing, Casazza, Joseph P., Mullikin, James C., Kwong, Peter D., Mascola, John R., Shapiro, Lawrence

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Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii by Snitkin, Evan S., Zelazny, Adrian M., Montero, Clemente I., Stock, Frida, Mijares, Lilia, Murray, Patrick R., Segre, Julie A.

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Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains by Zhu, Jiang, Ofek, Gilad, Yang, Yongping, Zhang, Baoshan, Louder, Mark K., Lu, Gabriel, McKee, Krisha, Pancera, Marie, Skinner, Jeff, Zhang, Zhenhai, Parks, Robert, Eudailey, Joshua, Lloyd, Krissey E., Blinn, Julie, Alam, S. Munir, Haynes, Barton F., Simek, Melissa, Burton, Dennis R., Koff, Wayne C., Mullikin, James C., Mascola, John R., Shapiro, Lawrence, Kwong, Peter D.

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Analysis of immunoglobulin transcripts and hypermutation following SHIVAD8 infection and protein-plus-adjuvant immunization by Francica, Joseph R., Sheng, Zizhang, Zhang, Zhenhai, Nishimura, Yoshiaki, Shingai, Masashi, Ramesh, Akshaya, Keele, Brandon F., Schmidt, Stephen D., Flynn, Barbara J., Darko, Sam, Lynch, Rebecca M., Yamamoto, Takuya, Matus-Nicodemos, Rodrigo, Wolinsky, David, Nason, Martha, Valiante, Nicholas M., Malyala, Padma, De Gregorio, Ennio, Barnett, Susan W., Singh, Manmohan, O’Hagan, Derek T., Koup, Richard A., Mascola, John R., Martin, Malcolm A., Kepler, Thomas B., Douek, Daniel C., Shapiro, Lawrence, Seder, Robert A.

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Roadmap on established and emerging photovoltaics for sustainable energy conversion by Blakesley, James C, Bonilla, Ruy S, Freitag, Marina, Ganose, Alex M, Gasparini, Nicola, Kaienburg, Pascal, Koutsourakis, George, Major, Jonathan D, Nelson, Jenny, Noel, Nakita K, Roose, Bart, Yun, Jae Sung, Aliwell, Simon, Altermatt, Pietro P, Ameri, Tayebeh, Andrei, Virgil, Armin, Ardalan, Bagnis, Diego, Baker, Jenny, Beath, Hamish, Bellanger, Mathieu, Berrouard, Philippe, Blumberger, Jochen, Boden, Stuart A, Bronstein, Hugo, Carnie, Matthew J, Case, Chris, Castro, Fernando A, Chang, Yi-Ming, Chao, Elmer, Clarke, Tracey M, Cooke, Graeme, Docampo, Pablo, Durose, Ken, Durrant, James R, Filip, Marina R, Friend, Richard H, Frost, Jarvist M, Gibson, Elizabeth A, Gillett, Alexander J, Goddard, Pooja, Habisreutinger, Severin N, Heeney, Martin, Hendsbee, Arthur D, Hirst, Louise C, Islam, M Saiful, Jayawardena, K D G Imalka, Johnston, Michael B, Kauer, Matthias, Kettle, Jeff, Kim, Ji-Seon, Lamb, Dan, Lidzey, David, Lim, Jihoo, MacKenzie, Roderick, Mason, Nigel, McCulloch, Iain, McKenna, Keith P, Meier, Sebastian B, Meredith, Paul, Morse, Graham, Murphy, John D, Nicklin, Chris, Ortega-Arriaga, Paloma, Osterberg, Thomas, Patel, Jay B, Peaker, Anthony, Riede, Moritz, Rush, Martyn, Ryan, James W, Scanlon, David O, Skabara, Peter J, So, Franky, Snaith, Henry J, Steier, Ludmilla, Thiesbrummel, Jarla, Troisi, Alessandro, Underwood, Craig, Walzer, Karsten, Watson, Trystan, Walls, J Michael, Walsh, Aron, Whalley, Lucy D, Winchester, Benedict, Stranks, Samuel D, Hoye, Robert L Z

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Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates by Blakesley, Robert W, Hansen, Nancy F, Gupta, Jyoti, McDowell, Jennifer C, Maskeri, Baishali, Barnabas, Beatrice B, Brooks, Shelise Y, Coleman, Holly, Haghighi, Payam, Ho, Shi-Ling, Schandler, Karen, Stantripop, Sirintorn, Vogt, Jennifer L, Thomas, Pamela J, Bouffard, Gerard G, Green, Eric D

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Stability of polymeric thin film transistors for x-ray imaging applications by Newman, Christopher R., Sirringhaus, Henning, Blakesley, James C., Speller, Robert

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Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome by Margulies, Elliott H, Cooper, Gregory M, Asimenos, George, Thomas, Daryl J, Dewey, Colin N, Siepel, Adam, Birney, Ewan, Keefe, Damian, Schwartz, Ariel S, Hou, Minmei, Taylor, James, Nikolaev, Sergey, Montoya-Burgos, Juan I, Löytynoja, Ari, Whelan, Simon, Pardi, Fabio, Massingham, Tim, Brown, James B, Bickel, Peter, Holmes, Ian, Mullikin, James C, Ureta-Vidal, Abel, Paten, Benedict, Stone, Eric A, Rosenbloom, Kate R, Kent, W James, Bouffard, Gerard G, Guan, Xiaobin, Hansen, Nancy F, Idol, Jacquelyn R, Maduro, Valerie V B, Maskeri, Baishali, McDowell, Jennifer C, Park, Morgan, Thomas, Pamela J, Young, Alice C, Blakesley, Robert W, Muzny, Donna M, Sodergren, Erica, Wheeler, David A, Worley, Kim C, Jiang, Huaiyang, Weinstock, George M, Gibbs, Richard A, Graves, Tina, Fulton, Robert, Mardis, Elaine R, Wilson, Richard K, Clamp, Michele, Cuff, James, Gnerre, Sante, Jaffe, David B, Chang, Jean L, Lindblad-Toh, Kerstin, Lander, Eric S, Hinrichs, Angie, Trumbower, Heather, Clawson, Hiram, Zweig, Ann, Kuhn, Robert M, Barber, Galt, Harte, Rachel, Karolchik, Donna, Field, Matthew A, Moore, Richard A, Matthewson, Carrie A, Schein, Jacqueline E, Marra, Marco A, Antonarakis, Stylianos E, Batzoglou, Serafim, Goldman, Nick, Hardison, Ross, Haussler, David, Miller, Webb, Pachter, Lior, Green, Eric D, Sidow, Arend

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An intermediate grade of finished genomic sequence suitable for comparative analyses by Blakesley, Robert W, Hansen, Nancy F, Mullikin, James C, Thomas, Pamela J, McDowell, Jennifer C, Maskeri, Baishali, Young, Alice C, Benjamin, Beatrice, Brooks, Shelise Y, Coleman, Bradley I, Gupta, Jyoti, Ho, Shi-Ling, Karlins, Eric M, Maduro, Quino L, Stantripop, Sirintorn, Tsurgeon, Cyrus, Vogt, Jennifer L, Walker, Michelle A, Masiello, Catherine A, Guan, Xiaobin, Bouffard, Gerard G, Green, Eric D

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Systematic sequencing of cDNA clones using the transposon Tn5 by Shevchenko, Yuriy, Bouffard, Gerard G., Butterfield, Yaron S. N., Blakesley, Robert W., Hartley, James L., Young, Alice C., Marra, Marco A., Jones, Steven J. M., Touchman, Jeffrey W., Green, Eric D.

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