The relation between oral Candida load and bacterial microbiome profiles in Dutch older adults by Kraneveld, Eefje A, Buijs, Mark J, Bonder, Marc J, Visser, Marjolein, Keijser, Bart J F, Crielaard, Wim, Zaura, Egija

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Comparing clustering and pre-processing in taxonomy analysis by BONDER, Marc J, ABELN, Sanne, ZAURA, Egija, BRANDT, Bernd W

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Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats by Jakubosky, David, Smith, Erin N., D’Antonio, Matteo, Jan Bonder, Marc, Young Greenwald, William W., D’Antonio-Chronowska, Agnieszka, Matsui, Hiroko, Stegle, Oliver, Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.

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Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk: A Cross-Sectional Study by Kurilshikov, Alexander, van den Munckhof, Inge C.L, Chen, Lianmin, Bonder, Marc J, Schraa, Kiki, Rutten, Joost H.W, Riksen, Niels P, de Graaf, Jacqueline, Oosting, Marije, Sanna, Serena, Joosten, Leo A.B, van der Graaf, Marinette, Brand, Tessa, Koonen, Debby P.Y, van Faassen, Martijn, Slagboom, P Eline, Xavier, Ramnik J, Kuipers, Folkert, Hofker, Marten H, Wijmenga, Cisca, Netea, Mihai G, Zhernakova, Alexandra, Fu, Jingyuan

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DNA methylation markers associated with type 2 diabetes, fasting glucose and HbA1c levels: a systematic review and replication in a case–control sample of the Lifelines study by Walaszczyk, Eliza, Luijten, Mirjam, Spijkerman, Annemieke M. W., Bonder, Marc J., Lutgers, Helen L., Snieder, Harold, Wolffenbuttel, Bruce H. R., van Vliet-Ostaptchouk, Jana V.

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Properties of structural variants and short tandem repeats associated with gene expression and complex traits by Jakubosky, David, D’Antonio, Matteo, Bonder, Marc Jan, Smail, Craig, Donovan, Margaret K. R., Young Greenwald, William W., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Stegle, Oliver, Smith, Erin N., Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.

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Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations by Shah, Sonia, Bonder, Marc J., Marioni, Riccardo E., Zhu, Zhihong, McRae, Allan F., Zhernakova, Alexandra, Harris, Sarah E., Liewald, Dave, Henders, Anjali K., Mendelson, Michael M., Liu, Chunyu, Joehanes, Roby, Liang, Liming, Heijmans, Bastiaan T., ’t Hoen, Peter A.C., van Meurs, Joyce, Isaacs, Aaron, Jansen, Rick, Franke, Lude, Boomsma, Dorret I., Pool, René, van Dongen, Jenny, Hottenga, Jouke J., van Greevenbroek, Marleen M.J., Stehouwer, Coen D.A., van der Kallen, Carla J.H., Schalkwijk, Casper G., Wijmenga, Cisca, Zhernakova, Sasha, Tigchelaar, Ettje F., Slagboom, P. Eline, Beekman, Marian, Deelen, Joris, van Heemst, Diana, Veldink, Jan H., van den Berg, Leonard H., van Duijn, Cornelia M., Hofman, Bert A., Uitterlinden, André G., Jhamai, P. Mila, Verbiest, Michael, Suchiman, H. Eka D., Verkerk, Marijn, van der Breggen, Ruud, van Rooij, Jeroen, Lakenberg, Nico, Mei, Hailiang, van Iterson, Maarten, van Galen, Michiel, Bot, Jan, van ’t Hof, Peter, Deelen, Patrick, Nooren, Irene, Moed, Matthijs, Vermaat, Martijn, Zhernakova, Dasha V., Luijk, René, Bonder, Marc Jan, van Dijk, Freerk, Arindrarto, Wibowo, Kielbasa, Szymon M., Swertz, Morris A., van Zwet, Erik W., Levy, Daniel, Martin, Nicholas G., Starr, John M., Wijmenga, Cisca, Wray, Naomi R., Yang, Jian, Montgomery, Grant W., Franke, Lude, Deary, Ian J., Visscher, Peter M.

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Tobacco smoking is associated with DNA methylation of diabetes susceptibility genes by Ligthart, Symen, Steenaard, Rebecca V., Peters, Marjolein J., van Meurs, Joyce B. J., Sijbrands, Eric J. G., Uitterlinden, André G., Bonder, Marc J., Hofman, Albert, Franco, Oscar H., Dehghan, Abbas

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TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage by Brandt, Bernd W, Bonder, Marc J, Huse, Susan M, Zaura, Egija

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Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk by Kurilshikov, Alexander, van den Munckhof, Inge C L, Chen, Lianmin, Bonder, Marc J, Schraa, Kiki, Rutten, Joost H W, Riksen, Niels P, de Graaf, Jacqueline, Oosting, Marije, Sanna, Serena, Joosten, Leo A B, van der Graaf, Marinette, Brand, Tessa, Koonen, Debby P Y, van Faassen, Martijn, Slagboom, P Eline, Xavier, Ramnik J, Kuipers, Folkert, Hofker, Marten H, Wijmenga, Cisca, Netea, Mihai G, Zhernakova, Alexandra, Fu, Jingyuan

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Genetic and epigenetic regulation of gene expression in fetal and adult human livers by Bonder, Marc Jan, Kasela, Silva, Kals, Mart, Tamm, Riin, Lokk, Kaie, Barragan, Isabel, Buurman, Wim A, Deelen, Patrick, Greve, Jan-Willem, Ivanov, Maxim, Rensen, Sander S, van Vliet-Ostaptchouk, Jana V, Wolfs, Marcel G, Fu, Jingyuan, Hofker, Marten H, Wijmenga, Cisca, Zhernakova, Alexandra, Ingelman-Sundberg, Magnus, Franke, Lude, Milani, Lili

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Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration by Deelen, Patrick, Bonder, Marc Jan, van der Velde, K Joeri, Westra, Harm-Jan, Winder, Erwin, Hendriksen, Dennis, Franke, Lude, Swertz, Morris A

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Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes by Xue, Angli, Wu, Yang, Zhu, Zhihong, Zhang, Futao, Kemper, Kathryn E., Zheng, Zhili, Yengo, Loic, Lloyd-Jones, Luke R., Sidorenko, Julia, Wu, Yeda, McRae, Allan F., Visscher, Peter M., Zeng, Jian, Yang, Jian

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A Powerful Pathway-Based Adaptive Test for Genetic Association with Common or Rare Variants by Pan, Wei, Kwak, Il-Youp, Wei, Peng

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Genome-wide identification of directed gene networks using large-scale population genomics data by Luijk, René, Dekkers, Koen F., van Iterson, Maarten, Arindrarto, Wibowo, Claringbould, Annique, Hop, Paul, Boomsma, Dorret I., van Duijn, Cornelia M., van Greevenbroek, Marleen M. J., Veldink, Jan H., Wijmenga, Cisca, Franke, Lude, ’t Hoen, Peter A. C., Jansen, Rick, van Meurs, Joyce, Mei, Hailiang, Slagboom, P. Eline, Heijmans, Bastiaan T., van Zwet, Erik W.

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DNA methylation markers associated with type 2 diabetes, fasting glucose and HbA 1c levels: a systematic review and replication in a case-control sample of the Lifelines study by Walaszczyk, Eliza, Luijten, Mirjam, Spijkerman, Annemieke M W, Bonder, Marc J, Lutgers, Helen L, Snieder, Harold, Wolffenbuttel, Bruce H R, van Vliet-Ostaptchouk, Jana V

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Microbial Impact on Plasma Metabolites is Linked to the Cardiovascular Risk and Phenotypes by van den Munckhof, Inge C., Kurilshikov, Alexander, Bonder, Marc J., Schraa, Kiki, Rutten, Joost H., Riksen, Niels P., de Graaf, Jacqueline, Oosting, Marije, Joosten, Leo A., Koonen, Debby, Slagboom, Eline P., Xavier, Ramnik J., Kuipers, Folkert, Hofker, Marten H., Wijmenga, Cisca, Netea, Mihai G., Zhernakova, Alexandra, Fu, Jingyuan

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Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity by Schirmer, Melanie, Smeekens, Sanne P., Vlamakis, Hera, Jaeger, Martin, Oosting, Marije, Franzosa, Eric A., ter Horst, Rob, Jansen, Trees, Jacobs, Liesbeth, Bonder, Marc Jan, Kurilshikov, Alexander, Fu, Jingyuan, Joosten, Leo A.B., Zhernakova, Alexandra, Huttenhower, Curtis, Wijmenga, Cisca, Netea, Mihai G., Xavier, Ramnik J.

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Multi-tissue DNA methylation age predictor in mouse by Stubbs, Thomas M, Bonder, Marc Jan, Stark, Anne-Katrien, Krueger, Felix, von Meyenn, Ferdinand, Stegle, Oliver, Reik, Wolf

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The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids by Fu, Jingyuan, Bonder, Marc Jan, Cenit, María Carmen, Tigchelaar, Ettje F, Maatman, Astrid, Dekens, Jackie A.M, Brandsma, Eelke, Marczynska, Joanna, Imhann, Floris, Weersma, Rinse K, Franke, Lude, Poon, Tiffany W, Xavier, Ramnik J, Gevers, Dirk, Hofker, Marten H, Wijmenga, Cisca, Zhernakova, Alexandra

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