BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis by Durinck, Steffen, Moreau, Yves, Kasprzyk, Arek, Davis, Sean, De Moor, Bart, Brazma, Alvis, Huber, Wolfgang

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ArrayExpress--a public database of microarray experiments and gene expression profiles by Parkinson, H, Kapushesky, M, Shojatalab, M, Abeygunawardena, N, Coulson, R, Farne, A, Holloway, E, Kolesnykov, N, Lilja, P, Lukk, M, Mani, R, Rayner, T, Sharma, A, William, E, Sarkans, U, Brazma, A

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ArrayExpress—a public repository for microarray gene expression data at the EBI by Brazma, Alvis, Parkinson, Helen, Sarkans, Ugis, Shojatalab, Mohammadreza, Vilo, Jaak, Abeygunawardena, Niran, Holloway, Ele, Kapushesky, Misha, Kemmeren, Patrick, Lara, Gonzalo Garcia, Oezcimen, Ahmet, Rocca-Serra, Philippe, Sansone, Susanna-Assunta

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ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression by Parkinson, Helen, Kapushesky, Misha, Kolesnikov, Nikolay, Rustici, Gabriella, Shojatalab, Mohammad, Abeygunawardena, Niran, Berube, Hugo, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Holloway, Ele, Lukk, Margus, Malone, James, Mani, Roby, Pilicheva, Ekaterina, Rayner, Tim F, Rezwan, Faisal, Sharma, Anjan, Williams, Eleanor, Bradley, Xiangqun Zheng, Adamusiak, Tomasz, Brandizi, Marco, Burdett, Tony, Coulson, Richard, Krestyaninova, Maria, Kurnosov, Pavel, Maguire, Eamonn, Neogi, Sudeshna Guha, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sklyar, Nataliya, Zhao, Mengyao, Sarkans, Ugis, Brazma, Alvis

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ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments by Parkinson, Helen, Sarkans, Ugis, Kolesnikov, Nikolay, Abeygunawardena, Niran, Burdett, Tony, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Hastings, Emma, Holloway, Ele, Kurbatova, Natalja, Lukk, Margus, Malone, James, Mani, Roby, Pilicheva, Ekaterina, Rustici, Gabriella, Sharma, Anjan, Williams, Eleanor, Adamusiak, Tomasz, Brandizi, Marco, Sklyar, Nataliya, Brazma, Alvis

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Transcription-Based Prediction of Response to IFNβ Using Supervised Computational Methods by Baranzini, Sergio E, Mousavi, Parvin, Rio, Jordi, Caillier, Stacy J, Stillman, Althea, Villoslada, Pablo, Wyatt, Matthew M, Comabella, Manuel, Greller, Larry D, Somogyi, Roland, Montalban, Xavier, Oksenberg, Jorge R

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ArrayExpress--a public database of microarray experiments and gene expression profiles by Parkinson, H, Kapushesky, M, Shojatalab, M, Abeygunawardena, N, Coulson, R, Farne, A, Holloway, E, Kolesnykov, N, Lilja, P, Lukk, M, Mani, R, Rayner, T, Sharma, A, William, E, Sarkans, U, Brazma, A

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The BioSample Database (BioSD) at the European Bioinformatics Institute by Gostev, Mikhail, Faulconbridge, Adam, Brandizi, Marco, Fernandez-Banet, Julio, Sarkans, Ugis, Brazma, Alvis, Parkinson, Helen

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ArrayExpress—a public repository for microarray gene expression data at the EBI by Parkinson, H., Sarkans, U., Shojatalab, M., Abeygunawardena, N., Contrino, S., Coulson, R., Farne, A., Garcia Lara, G., Holloway, E., Kapushesky, M., Lilja, P., Mukherjee, G., Oezcimen, A., Rayner, T., Rocca-Serra, P., Sharma, A., Sansone, S., Brazma, A.

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Expression Profiler: next generation—an online platform for analysis of microarray data by Kapushesky, Misha, Kemmeren, Patrick, Culhane, Aedín C., Durinck, Steffen, Ihmels, Jan, Körner, Christine, Kull, Meelis, Torrente, Aurora, Sarkans, Ugis, Vilo, Jaak, Brazma, Alvis

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SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues by Ziegler, Carly G.K., Allon, Samuel J., Nyquist, Sarah K., Mbano, Ian M., Tzouanas, Constantine N., Cao, Yuming, Hauser, Blake M., Feldman, Jared, Muus, Christoph, Wadsworth, Marc H., Kazer, Samuel W., Hughes, Travis K., Doran, Benjamin, Gatter, G. James, Vukovic, Marko, Taliaferro, Faith, Mead, Benjamin E., Guo, Zhiru, Gras, Delphine, Plaisant, Magali, Ansari, Meshal, Angelidis, Ilias, Adler, Heiko, Sucre, Jennifer M.S., Taylor, Chase J., Lin, Brian, Waghray, Avinash, Mitsialis, Vanessa, Buchheit, Kathleen M., Boyce, Joshua A., Barrett, Nora A., Laidlaw, Tanya M., Carroll, Shaina L., Colonna, Lucrezia, Yu, Alison, Gideon, Hannah P., Lin, Philana Ling, Bingle, Colin D., Snapper, Scott B., Kropski, Jonathan A., Theis, Fabian J., Schiller, Herbert B., Zaragosi, Laure-Emmanuelle, Barbry, Pascal, Leslie, Alasdair, Kiem, Hans-Peter, Flynn, JoAnne L., Fortune, Sarah M., Berger, Bonnie, Finberg, Robert W., Garber, Manuel, Schmidt, Aaron G., Lingwood, Daniel, Shalek, Alex K., Ordovas-Montanes, Jose, Banovich, Nicholas, Barbry, Pascal, Desai, Tushar, Duong, Thu Elizabeth, Eickelberg, Oliver, Falk, Christine, Farzan, Michael, Glass, Ian, Haniffa, Muzlifah, Hung, Deborah, Kaminski, Naftali, Krasnow, Mark, Kuhnemund, Malte, Lafyatis, Robert, Lee, Haeock, Leroy, Sylvie, Lundeberg, Joakim, Meyer, Kerstin, Misharin, Alexander, Nawijn, Martijn, Nikolic, Marko Z., Ordovas-Montanes, Jose, Pe’er, Dana, Quake, Stephen, Rajagopal, Jay, Tata, Purushothama Rao, Regev, Aviv, Reyfman, Paul A., Rosen, Orit, Saeb-Parsy, Kourosh, Samakovlis, Christos, Schiller, Herbert, Schultze, Joachim L., Seibold, Max A., Shalek, Alex K., Shepherd, Douglas, Sun, Xin, Theis, Fabian, Tsankov, Alexander, von Papen, Michael, Whitsett, Jeffrey, Xavier, Ramnik, Xu, Yan, Zaragosi, Laure-Emmanuelle, Zhang, Kun

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Transcriptome and genome sequencing uncovers functional variation in humans by Lappalainen, Tuuli, Sammeth, Michael, Friedländer, Marc R., ‘t Hoen, Peter A. C., Monlong, Jean, Rivas, Manuel A., Gonzàlez-Porta, Mar, Kurbatova, Natalja, Griebel, Thasso, Ferreira, Pedro G., Barann, Matthias, Wieland, Thomas, Greger, Liliana, van Iterson, Maarten, Almlöf, Jonas, Ribeca, Paolo, Pulyakhina, Irina, Esser, Daniela, Giger, Thomas, Tikhonov, Andrew, Sultan, Marc, Bertier, Gabrielle, MacArthur, Daniel G., Lek, Monkol, Lizano, Esther, Buermans, Henk P. J., Padioleau, Ismael, Schwarzmayr, Thomas, Karlberg, Olof, Ongen, Halit, Kilpinen, Helena, Beltran, Sergi, Gut, Marta, Kahlem, Katja, Amstislavskiy, Vyacheslav, Stegle, Oliver, Pirinen, Matti, Montgomery, Stephen B., Donnelly, Peter, McCarthy, Mark I., Flicek, Paul, Strom, Tim M., Lehrach, Hans, Schreiber, Stefan, Sudbrak, Ralf, Carracedo, Ángel, Antonarakis, Stylianos E., Häsler, Robert, Syvänen, Ann-Christine, van Ommen, Gert-Jan, Brazma, Alvis, Meitinger, Thomas, Rosenstiel, Philip, Guigó, Roderic, Gut, Ivo G., Estivill, Xavier, Dermitzakis, Emmanouil T.

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One-stop shop for microarray data by Brazma, Alvis, Robinson, Alan, Cameron, Graham, Ashburner, Michael

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Genomic basis for RNA alterations in cancer by Calabrese, Claudia, Davidson, Natalie R., Demircioğlu, Deniz, Fonseca, Nuno A., He, Yao, Kahles, André, Lehmann, Kjong-Van, Liu, Fenglin, Shiraishi, Yuichi, Soulette, Cameron M., Urban, Lara, Greger, Liliana, Li, Siliang, Liu, Dongbing, Perry, Marc D., Xiang, Qian, Zhang, Fan, Zhang, Junjun, Bailey, Peter, Erkek, Serap, Hoadley, Katherine A., Hou, Yong, Huska, Matthew R., Kilpinen, Helena, Korbel, Jan O., Marin, Maximillian G., Markowski, Julia, Nandi, Tannistha, Pan-Hammarström, Qiang, Pedamallu, Chandra Sekhar, Siebert, Reiner, Stark, Stefan G., Su, Hong, Tan, Patrick, Waszak, Sebastian M., Yung, Christina, Zhu, Shida, Awadalla, Philip, Creighton, Chad J., Meyerson, Matthew, Ouellette, B. F. Francis, Wu, Kui, Yang, Huanming, Brazma, Alvis, Brooks, Angela N., Göke, Jonathan, Rätsch, Gunnar, Schwarz, Roland F., Stegle, Oliver, Zhang, Zemin

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A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings by Torrente, Aurora, Kapushesky, Misha, Brazma, Alvis

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Generation and Analysis of Large-Scale Data-Driven Mycobacterium tuberculosis Functional Networks for Drug Target Identification by Mazandu, Gaston K., Mulder, Nicola J.

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P59 Transcriptome analysis in a mouse model of FKRP-deficient muscular dystrophy by Lin, Y-Y, Fonseca, N, Maruyama, S.R, Fernandez-Fuente, M, Brazma, A, Marioni, J, Muntoni, F, Brown, S.C

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Myocyte-Specific Upregulation of ACE2 in Cardiovascular Disease: Implications for SARS-CoV-2–Mediated Myocarditis by Tucker, Nathan R., Chaffin, Mark, Bedi, Kenneth C., Papangeli, Irinna, Akkad, Amer-Denis, Arduini, Alessandro, Hayat, Sikander, Eraslan, Gökcen, Muus, Christoph, Bhattacharyya, Roby P., Stegmann, Christian M., Margulies, Kenneth B., Ellinor, Patrick T.

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Building and analysing genome-wide gene disruption networks by Rung, J., Schlitt, T., Brazma, A., Freivalds, K., Vilo, J.

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RNAget: an API to securely retrieve RNA quantifications by Upchurch, Sean, Palumbo, Emilio, Adams, Jeremy, Bujold, David, Bourque, Guillaume, Nedzel, Jared, Graham, Keenan, Kagda, Meenakshi S, Assis, Pedro, Hitz, Benjamin, Righi, Emilio, Guigó, Roderic, Wold, Barbara J

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