Comparative genomics and understanding of microbial biology by Fraser, C M, Eisen, J, Fleischmann, R D, Ketchum, K A, Peterson, S

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Human, mouse, and rat genome large-scale rearrangements: stability versus speciation by Zhao, Shaying, Shetty, Jyoti, Hou, Lihua, Delcher, Arthur, Zhu, Baoli, Osoegawa, Kazutoyo, de Jong, Pieter, Nierman, William C, Strausberg, Robert L, Fraser, Claire M

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Temporal Variability of Escherichia coli Diversity in the Gastrointestinal Tracts of Tanzanian Children with and without Exposure to Antibiotics by Richter, Taylor K S, Hazen, Tracy H, Lam, Diana, Coles, Christian L, Seidman, Jessica C, You, Yaqi, Silbergeld, Ellen K, Fraser, Claire M, Rasko, David A

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In Vivo Assay Reveals Microbial OleA Thiolases Initiating Hydrocarbon and β-Lactone Biosynthesis by Smith, Megan D, Robinson, Serina L, Molomjamts, Mandkhai, Wackett, Lawrence P

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The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus by Venter, J. Craig, Klenk, Hans-Peter, Clayton, Rebecca A, Tomb, Jean-Francois, White, Owen, Nelson, Karen E, Ketchum, Karen A, Dodson, Robert J, Gwinn, Michelle, Hickey, Erin K, Peterson, Jeremy D, Richardson, Delwood L, Kerlavage, Anthony R, Graham, David E, Kyrpides, Nikos C, Fleischmann, Robert D, Quackenbush, John, Lee, Norman H, Sutton, Granger G, Gill, Steven, Kirkness, Ewen F, Dougherty, Brian A, McKenney, Keith, Adams, Mark D, Loftus, Brendan, Peterson, Scott, Reich, Claudia I, McNeil, Leslie K, Badger, Jonathan H, Glodek, Anna, Zhou, Lixin, Overbeek, Ross, Gocayne, Jeannine D, Weidman, Janice F, McDonald, Lisa, Utterback, Teresa, Cotton, Matthew D, Spriggs, Tracy, Artiach, Patricia, Kaine, Brian P, Sykes, Sean M, Sadow, Paul W, D'Andrea, Kurt P, Bowman, Cheryl, Fujii, Claire, Garland, Stacey A, Mason, Tanya M, Olsen, Gary J, Fraser, Claire M, Smith, Hamilton O, Woese, Carl R

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Systemic and Terminal Ileum Mucosal Immunity Elicited by Oral Immunization With the Ty21a Typhoid Vaccine in Humans by Booth, Jayaum S, Patil, Seema A, Ghazi, Leyla, Barnes, Robin, Fraser, Claire M, Fasano, Alessio, Greenwald, Bruce D, Sztein, Marcelo B

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Fluorescence-Based Flow Sorting in Parallel with Transposon Insertion Site Sequencing Identifies Multidrug Efflux Systems in Acinetobacter baumannii by Hassan, Karl A, Cain, Amy K, Huang, TaoTao, Liu, Qi, Elbourne, Liam D H, Boinett, Christine J, Brzoska, Anthony J, Li, Liping, Ostrowski, Martin, Nhu, Nguyen Thi Khanh, Nhu, Tran Do Hoang, Baker, Stephen, Parkhill, Julian, Paulsen, Ian T

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Experimental infections of the reservoir species Peromyscus leucopus with diverse strains of Borrelia burgdorferi, a Lyme disease agent by Baum, Elisabeth, Hue, Fong, Barbour, Alan G

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Characterization of Clinically-Attenuated Burkholderia mallei by Whole Genome Sequencing: Candidate Strain for Exclusion from Select Agent Lists by Schutzer, Steven E, Schlater, Linda R. K, Ronning, Catherine M, DeShazer, David, Luft, Benjamin J, Dunn, John J, Ravel, Jacques, Fraser-Liggett, Claire M, Nierman, William C, Ausubel, Frederick M

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Genome sequences of 65 Helicobacter pylori strains isolated from asymptomatic individuals and patients with gastric cancer, peptic ulcer disease, or gastritis by Blanchard, Thomas G., Czinn, Steven J., Correa, Pelayo, Nakazawa, Teruko, Keelan, Monika, Morningstar, Lindsay, Santana-Cruz, Ivette, Maroo, Ankit, McCracken, Carri, Shefchek, Kent, Daugherty, Sean, Song, Yang, Fraser, Claire M., Fricke, W. Florian

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How genomics has affected the concept of microbiology by Ward, Naomi, Fraser, Claire M

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Establishment of tongue microbiota by 18 months of age and determinants of its microbial profile by Kageyama, Shinya, Ma, Jiale, Furuta, Michiko, Takeshita, Toru, Asakawa, Mikari, Okabe, Yuka, Yamashita, Yoshihisa

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Microbial genome sequencing by Fraser, Claire M, Eisen, Jonathan A, Salzberg, Steven L

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Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections by Sharma-Kuinkel, Batu K., Mongodin, Emmanuel F., Myers, Jason R., Vore, Kelly L., Canfield, Greg S., Fraser, Claire M., Rude, Thomas H., Fowler, Vance G., Gill, Steven R.

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Cost effective, experimentally robust differential-expression analysis for human/mammalian, pathogen and dual-species transcriptomics by Shetty, Amol C, Mattick, John, Chung, Matthew, McCracken, Carrie, Mahurkar, Anup, Filler, Scott G, Fraser, Claire M, Rasko, David A, Bruno, Vincent M, Dunning Hotopp, Julie C

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Host demise as a beneficial function of indigenous microbiota in human hosts by Blaser, Martin J, Webb, Glenn F

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Gut Microbiota in Multiple Sclerosis by Cantarel, Brandi L., Waubant, Emmanuelle, Chehoud, Christel, Kuczynski, Justin, DeSantis, Todd Z., Warrington, Janet, Venkatesan, Arun, Fraser, Claire M., Mowry, Ellen M.

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Analysis of Vibrio cholerae genome sequences reveals unique rtxA variants in environmental strains and an rtxA-null mutation in recent altered El Tor isolates by Dolores, Jazel, Satchell, Karla J F

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Aligner optimization increases accuracy and decreases compute times in multi-species sequence data by Robinson, Kelly M, Hawkins, Aziah S, Santana-Cruz, Ivette, Adkins, Ricky S, Shetty, Amol C, Nagaraj, Sushma, Sadzewicz, Lisa, Tallon, Luke J, Rasko, David A, Fraser, Claire M, Mahurkar, Anup, Silva, Joana C, Dunning Hotopp, Julie C

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Phylogenomic identification of regulatory sequences in bacteria: an analysis of statistical power and an application to Borrelia burgdorferi sensu lato by Martin, Che L, Martin, Che I, Sukarna, Tika Y, Akther, Saymon, Ramrattan, Girish, Pagan, Pedro, Di, Lia, Mongodin, Emmanuel F, Fraser, Claire M, Schutzer, Steven E, Luft, Benjamin J, Casjens, Sherwood R, Qiu, Wei-Gang

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