Mutualistic co-evolution of type III effector genes in Sinorhizobium fredii and Bradyrhizobium japonicum by Kimbrel, Jeffrey A, Thomas, William J, Jiang, Yuan, Creason, Allison L, Thireault, Caitlin A, Sachs, Joel L, Chang, Jeff H

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Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management by Savory, Elizabeth A, Fuller, Skylar L, Weisberg, Alexandra J, Thomas, William J, Gordon, Michael I, Stevens, Danielle M, Creason, Allison L, Belcher, Michael S, Serdani, Maryna, Wiseman, Michele S, Grünwald, Niklaus J, Putnam, Melodie L, Chang, Jeff H

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Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine by Gu, Qiang, Kumar, Anup, Bray, Simon, Creason, Allison, Khanteymoori, Alireza, Jalili, Vahid, Grüning, Björn, Goecks, Jeremy

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Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci by Creason, Allison L, Vandeputte, Olivier M, Savory, Elizabeth A, Davis, 2nd, Edward W, Putnam, Melodie L, Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A, El Jaziri, Mondher, Loper, Joyce E, Mahmud, Taifo, Chang, Jeff H

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An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6 by Kimbrel, Jeffrey A, Givan, Scott A, Halgren, Anne B, Creason, Allison L, Mills, Dallice I, Banowetz, Gary M, Armstrong, Donald J, Chang, Jeff H

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The Pseudomonas syringae Type III Effector HopG1 Induces Actin Remodeling to Promote Symptom Development and Susceptibility during Infection by Shimono, Masaki, Lu, Yi-Ju, Porter, Katie, Kvitko, Brian H., Henty-Ridilla, Jessica, Creason, Allison, He, Sheng Yang, Chang, Jeff H., Staiger, Christopher J., Day, Brad

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Phytopathogenic Rhodococcus Have Diverse Plasmids With Few Conserved Virulence Functions by Savory, Elizabeth A., Weisberg, Alexandra J., Stevens, Danielle M., Creason, Allison L., Fuller, Skylar L., Pearce, Emma M., Chang, Jeff H.

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Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges by Ellrott, Kyle, Buchanan, Alex, Creason, Allison, Mason, Michael, Schaffter, Thomas, Hoff, Bruce, Eddy, James, Chilton, John M, Yu, Thomas, Stuart, Joshua M, Saez-Rodriguez, Julio, Stolovitzky, Gustavo, Boutros, Paul C, Guinney, Justin

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Preconception Carrier Screening by Genome Sequencing: Results from the Clinical Laboratory by Punj, Sumit, Akkari, Yassmine, Huang, Jennifer, Yang, Fei, Creason, Allison, Pak, Christine, Potter, Amiee, Dorschner, Michael O., Nickerson, Deborah A., Robertson, Peggy D., Jarvik, Gail P., Amendola, Laura M., Schleit, Jennifer, Simpson, Dana Kostiner, Rope, Alan F., Reiss, Jacob, Kauffman, Tia, Gilmore, Marian J., Himes, Patricia, Wilfond, Benjamin, Goddard, Katrina A.B., Richards, C. Sue

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Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies by Labrie, Marilyne, Li, Allen, Creason, Allison, Betts, Courtney, Keck, Jamie, Johnson, Brett, Sivagnanam, Shamilene, Boniface, Christopher, Ma, Hongli, Blucher, Aurora, Chang, Young Hwan, Chin, Koei, Vuky, Jacqueline, Guimaraes, Alexander R., Downey, Molly, Lim, Jeong Youn, Gao, Lina, Siex, Kiara, Parmar, Swapnil, Kolodzie, Annette, Spellman, Paul T., Goecks, Jeremy, Coussens, Lisa M., Corless, Christopher L., Bergan, Raymond, Gray, Joe W., Mills, Gordon B., Mitri, Zahi I.

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Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics by Li, Allen, Keck, Jamie M., Parmar, Swapnil, Patterson, Janice, Labrie, Marilyne, Creason, Allison L., Johnson, Brett E., Downey, Molly, Thomas, George, Beadling, Carol, Heiser, Laura M., Kolodzie, Annette, Guimaraes, Alexander R., Corless, Christopher L., Gray, Joe W., Mills, Gordon B., Bergan, Raymond C., Mitri, Zahi I.

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Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus by Creason, Allison L, Davis, 2nd, Edward W, Putnam, Melodie L, Vandeputte, Olivier M, Chang, Jeff H

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An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer by Johnson, Brett E., Creason, Allison L., Stommel, Jayne M., Keck, Jamie M., Parmar, Swapnil, Betts, Courtney B., Blucher, Aurora, Boniface, Christopher, Bucher, Elmar, Burlingame, Erik, Camp, Todd, Chin, Koei, Eng, Jennifer, Estabrook, Joseph, Feiler, Heidi S., Heskett, Michael B., Hu, Zhi, Kolodzie, Annette, Kong, Ben L., Labrie, Marilyne, Lee, Jinho, Leyshock, Patrick, Mitri, Souraya, Patterson, Janice, Riesterer, Jessica L., Sivagnanam, Shamilene, Somers, Julia, Sudar, Damir, Thibault, Guillaume, Weeder, Benjamin R., Zheng, Christina, Nan, Xiaolin, Thompson, Reid F., Heiser, Laura M., Spellman, Paul T., Thomas, George, Demir, Emek, Chang, Young Hwan, Coussens, Lisa M., Guimaraes, Alexander R., Corless, Christopher, Goecks, Jeremy, Bergan, Raymond, Mitri, Zahi, Mills, Gordon B., Gray, Joe W.

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The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution by Rood, Jennifer E., Coffey, Robert J., Demir, Emek, Ghosh, Sharmistha, Iacobuzio-Donahue, Christine A., Jané-Valbuena, Judit, Mazzilli, Sarah A., Pe’er, Dana, Tan, Kai, Aguilar, Ruben A., Babur, Ozgun, Boland, Genevieve, Bosse, Kristopher, Bott, Matthew, Boyden, Ed, Brooks, James, Cerami, Ethan, Chang, Young Hwan, Chaudhary, Ojasvi, Chen, Alyce A., Chen, Feng, Chun, Jaeyoung, Cisneros, Luis, Contrepois, Kevin, Creason, Allison L., Demir, Emek, Diskin, Sharon, Drewes, Julia, Eng, Jennifer, Erwin, Graham, Flaherty, Keith, Gao, Jianjiong, Gao, Vianne R., Giannakis, Marios, Gowers, Kate, Gray, Joe W., Greenleaf, William, Gresham, Jeremy, Hacohen, Nir, Harris, Kathleen A., Hayashi, Akimasa, Herndon, John M., Huh, Won Jae, Ijaz, Heba, Izar, Benjamin, Johnson, Brett E., Kaestner, Klaus, Kim, Albert H., Kopytra, Mateusz, Kundaje, Anshul, Lau, Ken S., Lee, Hayan, Lenburg, Marc, Lim, Kian-Huat, Lin, Yiyun, Lively, Tracy, Longabaugh, William J.R., Ma, Cynthia X., Marks, Jeffrey, Masilionais, Ignas, McKinley, Eliot T., McMichael, Joshua F., Mosse, Yael, Ness, Reid, Nikolov, Milen, Oberdoerffer, Philipp, Offin, Michael, Olson, Anastasiya, Ossandon, Miguel, Polyak, Kornelia, Reid, Mary, Roy, Sudipta, Ryser, Marc D., Schrag, Deborah, Sears, Rosalie C., Shalek, Alex, Sheng, Jeff, Shoghi, Kooresh I., Sibley, Alexander B., Sorger, Peter K., Southard-Smith, Austin, Srivastava, Sudhir, Storm, Phillip, Sullivan, Ryan, Suvà, Mario, Thorsson, Vésteinn, Tran, Linh, Veis, Deborah J., Vossough, Arastoo, Wagle, Nikhil, Wang, Liang-Bo, West, Robert, Wu, Chi-yun, Wyczalkowski, Matthew A., Xie, Yubin, Yang, Xiaolu, Zhang, Mianlei, Zhang, Yantian, Zhou, Daniel Cui, Zhuang, Xiaowei

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Imputing Single-Cell Protein Abundance in Multiplex Tissue Imaging by Kirchgaessner, Raphael, Watson, Cameron, Creason, Allison L, Kaya Keutler, Goecks, Jeremy

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Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management by Savory, Elizabeth A, Fuller, Skylar L, Weisberg, Alexandra J, Thomas, William J, Gordon, Michael I, Stevens, Danielle M, Creason, Allison L, Belcher, Michael S, Serdani, Maryna, Wiseman, Michele S, Grünwald, Niklaus J, Putnam, Melodie L, Chang, Jeff H

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Phase Ib Dose Expansion and Translational Analyses of Olaparib in Combination with Capivasertib in Recurrent Endometrial, Triple-Negative Breast, and Ovarian Cancer by Westin, Shannon N, Labrie, Marilyne, Litton, Jennifer K, Blucher, Aurora, Fang, Yong, Vellano, Christopher P, Marszalek, Joseph R, Feng, Ningping, Ma, XiaoYan, Creason, Allison, Fellman, Bryan, Yuan, Ying, Lee, Sanghoon, Kim, Tae-Beom, Liu, Jinsong, Chelariu-Raicu, Anca, Chen, Tsun Hsuan, Kabil, Nashwa, Soliman, Pamela T, Frumovitz, Michael, Schmeler, Katheleen M, Jazaeri, Amir, Lu, Karen H, Murthy, Rashmi, Meyer, Larissa A, Sun, Charlotte C, Sood, Anil K, Coleman, Robert L, Mills, Gordon B

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Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples by Bailey, Matthew H., Meyerson, William U., Dursi, Lewis Jonathan, Wang, Liang-Bo, Dong, Guanlan, Liang, Wen-Wei, Weerasinghe, Amila, Li, Shantao, Li, Yize, Kelso, Sean, Saksena, Gordon, Ellrott, Kyle, Wendl, Michael C., Wheeler, David A., Getz, Gad, Simpson, Jared T., Gerstein, Mark B., Ding, Li

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Phase 1b dose expansion and translational analyses of olaparib in combination with capivasertib in recurrent endometrial, triple negative breast, and ovarian cancer by Westin, Shannon N., Labrie, Marilyne, Litton, Jennifer K., Blucher, Aurora, Fang, Yong, Vellano, Christopher P., Marszalek, Joseph R., Feng, Ningping, Ma, XiaoYan, Creason, Allison, Fellman, Bryan, Yuan, Ying, Lee, Sanghoon, Kim, Tae-Beom, Liu, Jinsong, Chelariu-Raicu, Anca, Chen, Tsun Hsuan, Kabil, Nashwa, Soliman, Pamela T., Frumovitz, Michael, Schmeler, Katheleen M., Jazaeri, Amir, Lu, Karen H., Murthy, Rashmi, Meyer, Larissa A., Sun, Charlotte C., Sood, Anil K., Coleman, Robert L., Mills, Gordon B.

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Abstract 4929: Leveraging multi-omics tumor boards for precision medicine in the OHSU SMMART Treatments Program by Keck, Jamie M., Parmar, Swapnil, Kong, Ben, Mitri, Zahi, Corless, Christopher, Kolodzie, Annette, Creason, Allison, Goecks, Jeremy, Leyshock, Patrick, Siex, Kiara, Johnson, Brett E., Patterson, Janice, Heiser, Laura, Olson, Anastasiya, Viehdorfer, Matt, Mayfield, Georgia, Laverdure, Jennifer, Gray, Joe W., Mills, Gordon B., Bergan, Raymond C.

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