Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment by Morgan, Xochitl C, Tickle, Timothy L, Sokol, Harry, Gevers, Dirk, Devaney, Kathryn L, Ward, Doyle V, Reyes, Joshua A, Shah, Samir A, LeLeiko, Neal, Snapper, Scott B, Bousvaros, Athos, Korzenik, Joshua, Sands, Bruce E, Xavier, Ramnik J, Huttenhower, Curtis

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Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems by Emerson, Joanne B, Adams, Rachel I, Román, Clarisse M Betancourt, Brooks, Brandon, Coil, David A, Dahlhausen, Katherine, Ganz, Holly H, Hartmann, Erica M, Hsu, Tiffany, Justice, Nicholas B, Paulino-Lima, Ivan G, Luongo, Julia C, Lymperopoulou, Despoina S, Gomez-Silvan, Cinta, Rothschild-Mancinelli, Brooke, Balk, Melike, Huttenhower, Curtis, Nocker, Andreas, Vaishampayan, Parag, Rothschild, Lynn J

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Bone Marrow Is a Major Parasite Reservoir in Plasmodium vivax Infection by Obaldia, 3rd, Nicanor, Meibalan, Elamaran, Sa, Juliana M, Ma, Siyuan, Clark, Martha A, Mejia, Pedro, Moraes Barros, Roberto R, Otero, William, Ferreira, Marcelo U, Mitchell, James R, Milner, Danny A, Huttenhower, Curtis, Wirth, Dyann F, Duraisingh, Manoj T, Wellems, Thomas E, Marti, Matthias

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Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission by Rooks, Michelle G, Veiga, Patrick, Wardwell-Scott, Leslie H, Tickle, Timothy, Segata, Nicola, Michaud, Monia, Gallini, Carey Ann, Beal, Chloé, van Hylckama-Vlieg, Johan ET, Ballal, Sonia A, Morgan, Xochitl C, Glickman, Jonathan N, Gevers, Dirk, Huttenhower, Curtis, Garrett, Wendy S

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Biogeography of the Intestinal Mucosal and Lumenal Microbiome in the Rhesus Macaque by Yasuda, Koji, Oh, Keunyoung, Ren, Boyu, Tickle, Timothy L., Franzosa, Eric A., Wachtman, Lynn M., Miller, Andrew D., Westmoreland, Susan V., Mansfield, Keith G., Vallender, Eric J., Miller, Gregory M., Rowlett, James K., Gevers, Dirk, Huttenhower, Curtis, Morgan, Xochitl C.

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Cross-study validation for the assessment of prediction algorithms by Bernau, Christoph, Riester, Markus, Boulesteix, Anne-Laure, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi, Trippa, Lorenzo

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Global assessment of genomic regions required for growth in Mycobacterium tuberculosis by Zhang, Yanjia J, Ioerger, Thomas R, Huttenhower, Curtis, Long, Jarukit E, Sassetti, Christopher M, Sacchettini, James C, Rubin, Eric J

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Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans by Vatanen, Tommi, Kostic, Aleksandar D., d’Hennezel, Eva, Siljander, Heli, Franzosa, Eric A., Yassour, Moran, Kolde, Raivo, Vlamakis, Hera, Arthur, Timothy D., Hämäläinen, Anu-Maaria, Peet, Aleksandr, Tillmann, Vallo, Uibo, Raivo, Mokurov, Sergei, Dorshakova, Natalya, Ilonen, Jorma, Virtanen, Suvi M., Szabo, Susanne J., Porter, Jeffrey A., Lähdesmäki, Harri, Huttenhower, Curtis, Gevers, Dirk, Cullen, Thomas W., Knip, Mikael, Xavier, Ramnik J.

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Bioinformatics for the Human Microbiome Project by Gevers, Dirk, Pop, Mihai, Schloss, Patrick D, Huttenhower, Curtis

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Cross-biome comparison of microbial association networks by Faust, Karoline, Lima-Mendez, Gipsi, Lerat, Jean-Sébastien, Sathirapongsasuti, Jarupon F, Knight, Rob, Huttenhower, Curtis, Lenaerts, Tom, Raes, Jeroen

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HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor by Schiffer, Lucas, Azhar, Rimsha, Shepherd, Lori, Ramos, Marcel, Geistlinger, Ludwig, Huttenhower, Curtis, Dowd, Jennifer B, Segata, Nicola, Waldron, Levi

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Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity by Schirmer, Melanie, Smeekens, Sanne P., Vlamakis, Hera, Jaeger, Martin, Oosting, Marije, Franzosa, Eric A., Horst, Rob ter, Jansen, Trees, Jacobs, Liesbeth, Bonder, Marc Jan, Kurilshikov, Alexander, Fu, Jingyuan, Joosten, Leo A.B., Zhernakova, Alexandra, Huttenhower, Curtis, Wijmenga, Cisca, Netea, Mihai G., Xavier, Ramnik J.

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Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast by Brauer, Matthew J, Huttenhower, Curtis, Airoldi, Edoardo M, Rosenstein, Rachel, Matese, John C, Gresham, David, Boer, Viktor M, Troyanskaya, Olga G, Botstein, David

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Epigenomic diversity of colorectal cancer indicated by LINE-1 methylation in a database of 869 tumors by Baba, Yoshifumi, Huttenhower, Curtis, Nosho, Katsuhiko, Tanaka, Noriko, Shima, Kaori, Hazra, Aditi, Schernhammer, Eva S, Hunter, David J, Giovannucci, Edward L, Fuchs, Charles S, Ogino, Shuji

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Timing and duration of dog walking and dog owner's chronotype in relation to incident depression risk among middle to older-aged female nurses by Żebrowska, Magdalena, Strohmaier, Susanne, Westgarth, Carri, Huttenhower, Curtis, Eliassen, Heather A, Haghayegh, Shahab, Huang, Tianyi, Laden, Francine, Hart, Jaime, Rosner, Bernard, Kawachi, Ichiro, Chavarro, Jorge E, Okereke, Olivia I, Schernhammer, Eva S

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Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis by Zhao, Sihai Dave, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi

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Fusobacterium nucleatum in Colorectal Cancer Relates to Immune Response Differentially by Tumor Microsatellite Instability Status by Hamada, Tsuyoshi, Zhang, Xuehong, Mima, Kosuke, Bullman, Susan, Sukawa, Yasutaka, Nowak, Jonathan A, Kosumi, Keisuke, Masugi, Yohei, Twombly, Tyler S, Cao, Yin, Song, Mingyang, Liu, Li, da Silva, Annacarolina, Shi, Yan, Gu, Mancang, Li, Wanwan, Koh, Hideo, Nosho, Katsuhiko, Inamura, Kentaro, Keum, NaNa, Wu, Kana, Meyerhardt, Jeffrey A, Kostic, Aleksandar D, Huttenhower, Curtis, Garrett, Wendy S, Meyerson, Matthew, Giovannucci, Edward L, Chan, Andrew T, Fuchs, Charles S, Nishihara, Reiko, Giannakis, Marios, Ogino, Shuji

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STAT3 Expression, Molecular Features, Inflammation Patterns, and Prognosis in a Database of 724 Colorectal Cancers by MORIKAWA, Teppei, BABA, Yoshifumi, OGINO, Shuji, YAMAUCHI, Mai, KUCHIBA, Aya, NOSHO, Katsuhiko, SHIMA, Kaori, TANAKA, Noriko, HUTTENHOWER, Curtis, FRANK, David A, FUCHS, Charles S

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Dietary lignans, plasma enterolactone levels, and metabolic risk in men: exploring the role of the gut microbiome by Li, Yanping, Wang, Fenglei, Li, Jun, Ivey, Kerry L, Wilkinson, Jeremy E, Wang, Dong D, Li, Ruifeng, Liu, Gang, Eliassen, Heather A, Chan, Andrew T, Clish, Clary B, Huttenhower, Curtis, Hu, Frank B, Sun, Qi, Rimm, Eric B

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Gut microbiome composition and metabolic activity in women with diverticulitis by Ma, Wenjie, Wang, Yiqing, Nguyen, Long H., Mehta, Raaj S., Ha, Jane, Bhosle, Amrisha, Mclver, Lauren J., Song, Mingyang, Clish, Clary B., Strate, Lisa L., Huttenhower, Curtis, Chan, Andrew T.

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