Gut microbiome composition and metabolic activity in women with diverticulitis by Ma, Wenjie, Wang, Yiqing, Nguyen, Long H., Mehta, Raaj S., Ha, Jane, Bhosle, Amrisha, Mclver, Lauren J., Song, Mingyang, Clish, Clary B., Strate, Lisa L., Huttenhower, Curtis, Chan, Andrew T.

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The oral microbiome in relation to pancreatic cancer risk in African Americans by Petrick, Jessica L., Wilkinson, Jeremy E., Michaud, Dominique S., Cai, Qiuyin, Gerlovin, Hanna, Signorello, Lisa B., Wolpin, Brian M., Ruiz-Narváez, Edward A., Long, Jirong, Yang, Yaohua, Johnson, W. Evan, Shu, Xiao-Ou, Huttenhower, Curtis, Palmer, Julie R.

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Comparative Meta-analysis of Prognostic Gene Signatures for Late-Stage Ovarian Cancer by WALDRON, Levi, HAIBE-KAINS, Benjamin, GANZFRIED, Benjamin Frederick, HUTTENHOWER, Curtis, BIRRER, Michael, PARMIGIANI, Giovanni, CULHANE, Aedín C, RIESTER, Markus, JIE DING, WANG, Xin Victoria, AHMADIFAR, Mahnaz, TYEKUCHEVA, Svitlana, BERNAU, Christoph, RISCH, Thomas

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Structure of the Mucosal and Stool Microbiome in Lynch Syndrome by Yan, Yan, Drew, David A., Markowitz, Arnold, Lloyd-Price, Jason, Abu-Ali, Galeb, Nguyen, Long H., Tran, Christina, Chung, Daniel C., Gilpin, Katherine K., Meixell, Dana, Parziale, Melanie, Schuck, Madeline, Patel, Zalak, Richter, James M., Kelsey, Peter B., Garrett, Wendy S., Chan, Andrew T., Stadler, Zsofia K., Huttenhower, Curtis

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Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment by Hsu, Tiffany, Joice, Regina, Vallarino, Jose, Abu-Ali, Galeb, Hartmann, Erica M, Shafquat, Afrah, DuLong, Casey, Baranowski, Catherine, Gevers, Dirk, Green, Jessica L, Morgan, Xochitl C, Spengler, John D, Huttenhower, Curtis

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Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location by Mima, Kosuke, Cao, Yin, Chan, Andrew T, Qian, Zhi Rong, Nowak, Jonathan A, Masugi, Yohei, Shi, Yan, Song, Mingyang, da Silva, Annacarolina, Gu, Mancang, Li, Wanwan, Hamada, Tsuyoshi, Kosumi, Keisuke, Hanyuda, Akiko, Liu, Li, Kostic, Aleksandar D, Giannakis, Marios, Bullman, Susan, Brennan, Caitlin A, Milner, Danny A, Baba, Hideo, Garraway, Levi A, Meyerhardt, Jeffrey A, Garrett, Wendy S, Huttenhower, Curtis, Meyerson, Matthew, Giovannucci, Edward L, Fuchs, Charles S, Nishihara, Reiko, Ogino, Shuji

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Mobilizable antibiotic resistance genes are present in dust microbial communities by Ben Maamar, Sarah, Glawe, Adam J, Brown, Taylor K, Hellgeth, Nancy, Hu, Jinglin, Wang, Ji-Ping, Huttenhower, Curtis, Hartmann, Erica M

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Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach by Wang, Ya, Yan, Yan, Thompson, Kelsey N, Bae, Sena, Accorsi, Emma K, Zhang, Yancong, Shen, Jiaxian, Vlamakis, Hera, Hartmann, Erica M, Huttenhower, Curtis

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The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment by Sczesnak, Andrew, Segata, Nicola, Qin, Xiang, Gevers, Dirk, Petrosino, Joseph F, Huttenhower, Curtis, Littman, Dan R, Ivanov, Ivaylo I

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Continuity of transcriptomes among colorectal cancer subtypes based on meta-analysis by Ma, Siyuan, Ogino, Shuji, Parsana, Princy, Nishihara, Reiko, Qian, Zhirong, Shen, Jeanne, Mima, Kosuke, Masugi, Yohei, Cao, Yin, Nowak, Jonathan A, Shima, Kaori, Hoshida, Yujin, Giovannucci, Edward L, Gala, Manish K, Chan, Andrew T, Fuchs, Charles S, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi

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The interleukin-33 receptor contributes to pulmonary responses to ozone in male mice: role of the microbiome by Kasahara, David I, Wilkinson, Jeremy E, Cho, Youngji, Cardoso, Aline P, Huttenhower, Curtis, Shore, Stephanie A

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Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships by McHardy, Ian H, Goudarzi, Maryam, Tong, Maomeng, Ruegger, Paul M, Schwager, Emma, Weger, John R, Graeber, Thomas G, Sonnenburg, Justin L, Horvath, Steve, Huttenhower, Curtis, McGovern, Dermot Pb, Fornace, Jr, Albert J, Borneman, James, Braun, Jonathan

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A quick guide to large-scale genomic data mining by Huttenhower, Curtis, Hofmann, Oliver

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Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors by Fahimipour, Ashkaan K, Ben Mamaar, Sarah, McFarland, Alexander G, Blaustein, Ryan A, Chen, Jing, Glawe, Adam J, Kline, Jeff, Green, Jessica L, Halden, Rolf U, Van Den Wymelenberg, Kevin, Huttenhower, Curtis, Hartmann, Erica M

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Analysis of Phosphorylation Sites on Proteins from Saccharomyces cerevisiae by Electron Transfer Dissociation (ETD) Mass Spectrometry by Chi, An, Huttenhower, Curtis, Geer, Lewis Y., Coon, Joshua J., Syka, John E. P., Bai, Dina L., Shabanowitz, Jeffrey, Burke, Daniel J., Troyanskaya, Olga G., Hunt, Donald F.

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RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities by Wang, Ya, Thompson, Kelsey N, Yan, Yan, Short, Meghan I, Zhang, Yancong, Franzosa, Eric A, Shen, Jiaxian, Hartmann, Erica M, Huttenhower, Curtis

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Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease by Bhosle, Amrisha, Bae, Sena, Zhang, Yancong, Chun, Eunyoung, Avila-Pacheco, Julian, Geistlinger, Ludwig, Pishchany, Gleb, Glickman, Jonathan N, Michaud, Monia, Waldron, Levi, Clish, Clary B, Xavier, Ramnik J, Vlamakis, Hera, Franzosa, Eric A, Garrett, Wendy S, Huttenhower, Curtis

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Finding function: evaluation methods for functional genomic data by Myers, Chad L, Barrett, Daniel R, Hibbs, Matthew A, Huttenhower, Curtis, Troyanskaya, Olga G

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The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries by Young, Caroline, Wood, Henry M, Seshadri, Ramakrishnan Ayloor, Van Nang, Pham, Vaccaro, Carlos, Melendez, Luis Contreras, Bose, Mayilvahanan, Van Doi, Mai, Piñero, Tamara Alejandra, Valladares, Camilo Tapia, Arguero, Julieta, Balaguer, Alba Fuentes, Thompson, Kelsey N, Yan, Yan, Huttenhower, Curtis, Quirke, Philip

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Daylight exposure modulates bacterial communities associated with household dust by Fahimipour, Ashkaan K, Hartmann, Erica M, Siemens, Andrew, Kline, Jeff, Levin, David A, Wilson, Hannah, Betancourt-Román, Clarisse M, Brown, G Z, Fretz, Mark, Northcutt, Dale, Siemens, Kyla N, Huttenhower, Curtis, Green, Jessica L, Van Den Wymelenberg, Kevin

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