MicrobesOnline: an integrated portal for comparative and functional genomics by Dehal, Paramvir S, Joachimiak, Marcin P, Price, Morgan N, Bates, John T, Baumohl, Jason K, Chivian, Dylan, Friedland, Greg D, Huang, Katherine H, Keller, Keith, Novichkov, Pavel S, Dubchak, Inna L, Alm, Eric J, Arkin, Adam P

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FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix by Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.

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Two rounds of whole genome duplication in the ancestral vertebrate by Dehal, Paramvir, Boore, Jeffrey L

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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics by Novichkov, Pavel S, Brettin, Thomas S, Novichkova, Elena S, Dehal, Paramvir S, Arkin, Adam P, Dubchak, Inna, Rodionov, Dmitry A

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Human Chromosome 19 and Related Regions in Mouse: Conservative and Lineage-Specific Evolution by Dehal, Paramvir, Predki, Paul, Olsen, Anne S., Kobayashi, Art, Folta, Peg, Lucas, Susan, Land, Miriam, Terry, Astrid, Carol L. Ecale Zhou, Rash, Sam, Zhang, Qing, Gordon, Laurie, Kim, Joomyeong, Elkin, Christopher, Pollard, Martin J., Richardson, Paul, Rokhsar, Dan, Uberbacher, Ed, Hawkins, Trevor, Branscomb, Elbert, Stubbs, Lisa

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Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis by Goodwin, Stephen B, M'barek, Sarrah Ben, Dhillon, Braham, Wittenberg, Alexander H J, Crane, Charles F, Hane, James K, Foster, Andrew J, Van der Lee, Theo A J, Grimwood, Jane, Aerts, Andrea, Antoniw, John, Bailey, Andy, Bluhm, Burt, Bowler, Judith, Bristow, Jim, van der Burgt, Ate, Canto-Canché, Blondy, Churchill, Alice C L, Conde-Ferràez, Laura, Cools, Hans J, Coutinho, Pedro M, Csukai, Michael, Dehal, Paramvir, De Wit, Pierre, Donzelli, Bruno, van de Geest, Henri C, van Ham, Roeland C H J, Hammond-Kosack, Kim E, Henrissat, Bernard, Kilian, Andrzej, Kobayashi, Adilson K, Koopmann, Edda, Kourmpetis, Yiannis, Kuzniar, Arnold, Lindquist, Erika, Lombard, Vincent, Maliepaard, Chris, Martins, Natalia, Mehrabi, Rahim, Nap, Jan P H, Ponomarenko, Alisa, Rudd, Jason J, Salamov, Asaf, Schmutz, Jeremy, Schouten, Henk J, Shapiro, Harris, Stergiopoulos, Ioannis, Torriani, Stefano F F, Tu, Hank, de Vries, Ronald P, Waalwijk, Cees, Ware, Sarah B, Wiebenga, Ad, Zwiers, Lute-Harm, Oliver, Richard P, Grigoriev, Igor V, Kema, Gert H J

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Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis by Jeffries, T.W, Grigoriev, I.V, Grimwood, J, Laplaza, J.M, Aerts, A, Salamov, A, Schmutz, J, Lindquist, E, Dehal, P, Shapiro, H

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Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome by Baxter, Laura, Tripathy, Sucheta, Ishaque, Naveed, Boot, Nico, Cabral, Adriana, Kemen, Eric, Thines, Marco, Ah-Fong, Audrey, Anderson, Ryan, Badejoko, Wole, Bittner-Eddy, Peter, Boore, Jeffrey L, Chibucos, Marcus C, Coates, Mary, Dehal, Paramvir, Delehaunty, Kim, Dong, Suomeng, Downton, Polly, Dumas, Bernard, Fabro, Georgina, Fronick, Catrina, Fuerstenberg, Susan I, Fulton, Lucinda, Gaulin, Elodie, Govers, Francine, Hughes, Linda, Humphray, Sean, Jiang, Rays H.Y, Judelson, Howard, Kamoun, Sophien, Kyung, Kim, Meijer, Harold, Minx, Patrick, Morris, Paul, Nelson, Joanne, Phuntumart, Vipa, Qutob, Dinah, Rehmany, Anne, Rougon-Cardoso, Alejandra, Ryden, Peter, Torto-Alalibo, Trudy, Studholme, David, Wang, Yuanchao, Win, Joe, Wood, Jo, Clifton, Sandra W, Rogers, Jane, Van den Ackerveken, Guido, Jones, Jonathan D.G, McDowell, John M, Beynon, Jim, Tyler, Brett M

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Pattern recognition molecules and innate immunity to parasites by McGuinness, David H., Dehal, Prabhjyot K., Pleass, Richard J.

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The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins by Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K., Chapman, Jarrod, Degnan, Bernard, de Tomaso, Anthony, Davidson, Brad, Di Gregorio, Anna, Gelpke, Maarten, Goodstein, David M., Harafuji, Naoe, Kenneth E. M. Hastings, Ho, Isaac, Hotta, Kohji, Huang, Wayne, Kawashima, Takeshi, Lemaire, Patrick, Martinez, Diego, Meinertzhagen, Ian A., Necula, Simona, Nonaka, Masaru, Putnam, Nik, Rash, Sam, Saiga, Hidetoshi, Satake, Masanobu, Terry, Astrid, Yamada, Lixy, Wang, Hong-Gang, Awazu, Satoko, Azumi, Kaoru, Boore, Jeffrey, Branno, Margherita, Chin-bow, Stephen, DeSantis, Rosaria, Doyle, Sharon, Francino, Pilar, Keys, David N., Haga, Shinobu, Hayashi, Hiroko, Hino, Kyosuke, Imai, Kaoru S., Inaba, Kazuo, Kano, Shungo, Kobayashi, Kenji, Kobayashi, Mari, Lee, Byung-In, Makabe, Kazuhiro W., Manohar, Chitra, Matassi, Giorgio, Medina, Monica, Mochizuki, Yasuaki, Mount, Steve, Morishita, Tomomi, Miura, Sachiko, Nakayama, Akie, Nishizaka, Satoko, Nomoto, Hisayo, Ohta, Fumiko, Oishi, Kazuko, Rigoutsos, Isidore, Sano, Masako, Sasaki, Akane, Sasakura, Yasunori, Shoguchi, Eiichi, Tadasu Shin-i, Spagnuolo, Antoinetta, Stainier, Didier, Suzuki, Miho M., Tassy, Olivier, Takatori, Naohito, Tokuoka, Miki, Yagi, Kasumi, Yoshizaki, Fumiko, Wada, Shuichi, Zhang, Cindy, Hyatt, P. Douglas, Larimer, Frank, Detter, Chris, Doggett, Norman, Glavina, Tijana, Hawkins, Trevor, Richardson, Paul, Lucas, Susan, Kohara, Yuji, Levine, Michael, Satoh, Nori, Rokhsar, Daniel S.

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes by Aparicio, Samuel, Chapman, Jarrod, Stupka, Elia, Putnam, Nik, Chia, Jer-ming, Dehal, Paramvir, Christoffels, Alan, Rash, Sam, Hoon, Shawn, Smit, Arian, Maarten D. Sollewijn Gelpke, Roach, Jared, Oh, Tania, Ho, Isaac Y., Wong, Marie, Detter, Chris, Verhoef, Frans, Predki, Paul, Tay, Alice, Lucas, Susan, Richardson, Paul, Smith, Sarah F., Clark, Melody S., Yvonne J. K. Edwards, Doggett, Norman, Zharkikh, Andrey, Tavtigian, Sean V., Pruss, Dmitry, Barnstead, Mary, Evans, Cheryl, Baden, Holly, Powell, Justin, Glusman, Gustavo, Rowen, Lee, Hood, Leroy, Tan, Y. H., Elgar, Greg, Hawkins, Trevor, Venkatesh, Byrappa, Rokhsar, Daniel, Brenner, Sydney

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The DNA sequence and biology of human chromosome 19 by Grimwood, Jane, Rubin, Edward M, Gordon, Laurie A, Olsen, Anne, Terry, Astrid, Schmutz, Jeremy, Lamerdin, Jane, Hellsten, Uffe, Goodstein, David, Couronne, Olivier, Tran-Gyamfi, Mary, Aerts, Andrea, Altherr, Michael, Ashworth, Linda, Bajorek, Eva, Black, Stacey, Branscomb, Elbert, Caenepeel, Sean, Carrano, Anthony, Caoile, Chenier, Man Chan, Yee, Christensen, Mari, Cleland, Catherine A, Copeland, Alex, Dalin, Eileen, Dehal, Paramvir, Denys, Mirian, Detter, John C, Escobar, Julio, Flowers, Dave, Fotopulos, Dea, Garcia, Carmen, Georgescu, Anca M, Glavina, Tijana, Gomez, Maria, Gonzales, Eidelyn, Groza, Matthew, Hammon, Nancy, Hawkins, Trevor, Haydu, Lauren, Ho, Isaac, Huang, Wayne, Israni, Sanjay, Jett, Jamie, Kadner, Kristen, Kimball, Heather, Kobayashi, Arthur, Larionov, Vladimer, Leem, Sun-Hee, Lopez, Frederick, Lou, Yunian, Lowry, Steve, Malfatti, Stephanie, Martinez, Diego, McCready, Paula, Medina, Catherine, Morgan, Jenna, Nelson, Kathryn, Nolan, Matt, Ovcharenko, Ivan, Pitluck, Sam, Pollard, Martin, Popkie, Anthony P, Predki, Paul, Quan, Glenda, Ramirez, Lucia, Rash, Sam, Retterer, James, Rodriguez, Alex, Rogers, Stephanine, Salamov, Asaf, Salazar, Angelica, She, Xinwei, Smith, Doug, Slezak, Tom, Solovyev, Victor, Thayer, Nina, Tice, Hope, Tsai, Ming, Ustaszewska, Anna, Vo, Nu, Wagner, Mark, Wheeler, Jeremy, Wu, Kevin, Xie, Gary, Yang, Joan, Dubchak, Inna, Furey, Terrence S, DeJong, Pieter, Dickson, Mark, Gordon, David, Eichler, Evan E, Pennacchio, Len A, Richardson, Paul, Stubbs, Lisa, Rokhsar, Daniel S, Myers, Richard M, Lucas, Susan M

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Genomic structural differentiation in Solanum: comparative mapping of the A- and E-genomes by Perez, F, Menendez, A, Dehal, P, Quiros, C.F

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Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii by Saunders, Neil F W, Thomas, Torsten, Curmi, Paul M G, Mattick, John S, Kuczek, Elizabeth, Slade, Rob, Davis, John, Franzmann, Peter D, Boone, David, Rusterholtz, Karl, Feldman, Robert, Gates, Chris, Bench, Shellie, Sowers, Kevin, Kadner, Kristen, Aerts, Andrea, Dehal, Paramvir, Detter, Chris, Glavina, Tijana, Lucas, Susan, Richardson, Paul, Larimer, Frank, Hauser, Loren, Land, Miriam, Cavicchioli, Ricardo

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Limited role of charge matching in the interaction of human immunoglobulin A with the immunoglobulin A Fc receptor (FcαRI) CD89 by Pleass, Richard J., Dehal, Prabhjyot K., Lewis, Melanie J., Woof, Jenny M.

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MetaMicrobesOnline: phylogenomic analysis of microbial communities by Chivian, Dylan, Dehal, Paramvir S, Keller, Keith, Arkin, Adam P

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Genetic Variability of Lepidium meyenii and other Andean Lepidium Species (Brassicaceae) Assessed by Molecular Markers by TOLEDO, J., DEHAL, P., JARRIN, F., HU, J., HERMANNS, M., AL-SHEHBAZH, I., QUIROS, C. F.

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Homology-Driven Assembly of a Sequence-Ready Mouse BAC Contig Map Spanning Regions Related to the 46-Mb Gene-Rich Euchromatic Segments of Human Chromosome 19 by Kim, Joomyeong, Gordon, Laurie, Dehal, Paramvir, Badri, Hummy, Christensen, Mari, Groza, Matthew, Ha, Chi, Hammond, Sha, Vargas, Michelle, Wehri, Edward, Wagner, Mark, Olsen, Anne, Stubbs, Lisa

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Cell wide responses to low oxygen exposure in Desulfovibriovulgaris Hildenborough by Mukhopadhyay, A., Redding, A., Joachimiak, M., Arkin, A., Borglin, S., Dehal, P., Chakraborty, R., Geller, J., Hazen, T., He, Q., Joyner, D., Martin, V., Wall, J., Yang, Z., Zhou, J., Keasling, J.

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MicrobesOnline: an integrated portal for comparative and functional genomics by P. S.,Dehal, M. P.,Joachimiak, M. N.,Price, J. T.,Bates, J. K.,Baumohl, D.,Chivian, G. D.,Friedland, K. H.,Huang, K.,Keller, P. S.,Novichkov, I. L.,Dubchak, E. J.,Alm, A. P.,Arkin

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