RNAcentral: a hub of information for non-coding RNA sequences by Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P

PolyA_(D)B v4: systematic polyA site identification and isoform annotation in human and mouse genomes using 3′ end and long-read sequencing data by Yu, Shan, Chen, Wei Chun, Wang, Luyang, Jewell, San, Mammedova, Ayna, Han, Seong Woo, Wickramasinghe, Jayamanna, Barash, Yoseph, Tian, Bin

Database resources of the national center for biotechnology information by Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Connor, Ryan, Funk, Kathryn, Kelly, Chris, Kim, Sunghwan, Madej, Tom, Marchler-Bauer, Aron, Lanczycki, Christopher, Lathrop, Stacy, Lu, Zhiyong, Thibaud-Nissen, Francoise, Murphy, Terence, Phan, Lon, Skripchenko, Yuri, Tse, Tony, Wang, Jiyao, Williams, Rebecca, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

Immunosenescence Inventory—a multi-omics database for immune aging researchlongmeta by Li, Hao, Zhao, Wei, Yang, Fei, Qiao, Qin, Ma, Shuai, Yang, Kuan, Song, Shuhui, Wang, Si, Qu, Jing, Liu, Guang-Hui, Bao, Yiming, Zhang, Weiqi

InterPro: the protein sequence classification resource in 2025longmeta by Blum, Matthias, Andreeva, Antonina, Florentino, Laise Cavalcanti, Chuguransky, Sara Rocio, Grego, Tiago, Hobbs, Emma, Pinto, Beatriz Lazaro, Orr, Ailsa, Paysan-Lafosse, Typhaine, Ponamareva, Irina, Salazar, Gustavo A, Bordin, Nicola, Bork, Peer, Bridge, Alan, Colwell, Lucy, Gough, Julian, Haft, Daniel H, Letunic, Ivica, Llinares-López, Felipe, Marchler-Bauer, Aron, Meng-Papaxanthos, Laetitia, Mi, Huaiyu, Natale, Darren A, Orengo, Christine A, Pandurangan, Arun P, Piovesan, Damiano, Rivoire, Catherine, Sigrist, Christian J A, Thanki, Narmada, Thibaud-Nissen, Françoise, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex

GCM and gcType in 2024: comprehensive resources for microbial strains and genomic datalongmeta by Fan, Guomei, Sun, Qinglan, Sun, Yan, Liu, Dongmei, Li, Shiwen, Li, Min, Chen, Qi, Wang, Fang, Moriya, Ohkuma, Itoh, Takashi, Kawasaki, Hiroko, Yu, Yajing, Cai, Man, Kim, Song-Gun, Lee, Jung-Sook, Ma, Juncai, Wu, Linhuan

LncPepAtlas: a comprehensive resource for exploring the translational landscape of long non-coding RNAslongmeta by Zhou, Xinyuan, Qin, Yanxia, Li, Jiangxue, Fan, Linyuan, Zhang, Shun, Zhang, Bing, Wu, Luoxuan, Gao, Anwei, Yang, Yongsan, Lv, Xueqin, Guo, Bingzhou, Sun, Liang

scTML: a pan-cancer single-cell landscape of multiple mutation typeslongmeta by Li, Haochen, Ma, Tianxing, Zhao, Zetong, Chen, Yixin, Xi, Xi, Zhao, Xiaofei, Zhou, Xiaoxiang, Gao, Yibo, Wei, Lei, Zhang, Xuegong

RDBSB: a database for catalytic bioparts with experimental evidencelongmeta by Liu, Wan, Wang, Pingping, Zhuang, Xinhao, Ling, Yunchao, Liu, Haiyan, Wang, Sheng, Yu, Haihan, Ma, Liangxiao, Jiang, Yuguo, Zhao, Guoping, Yan, Xing, Zhou, Zhihua, Zhang, Guoqing

KEGG: biological systems database as a model of the real world by Kanehisa, Minoru, Furumichi, Miho, Sato, Yoko, Matsuura, Yuriko, Ishiguro-Watanabe, Mari

PerturbDB for unraveling gene functions and regulatory networkslongmeta by Yang, Bing, Zhang, Man, Shi, Yanmei, Zheng, Bing-Qi, Shi, Chuanping, Lu, Daning, Yang, Zhi-Zhi, Dong, Yi-Ming, Zhu, Liwen, Ma, Xingyu, Zhang, Jingyuan, He, Jiehua, Zhang, Yin, Hu, Kaishun, Lin, Haoming, Liao, Jian-You, Yin, Dong

KEGG for taxonomy-based analysis of pathways and genomes by Kanehisa, Minoru, Furumichi, Miho, Sato, Yoko, Kawashima, Masayuki, Ishiguro-Watanabe, Mari

Database resources of the National Center for Biotechnology Information by Sayers, Eric W, Beck, Jeffrey, Bolton, Evan E, Bourexis, Devon, Brister, James R, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Kim, Sunghwan, Klimke, William, Marchler-Bauer, Aron, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, O’Leary, Nuala, Phan, Lon, Rangwala, Sanjida H, Schneider, Valerie A, Skripchenko, Yuri, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data by Hu, Congxue, Li, Tengyue, Xu, Yingqi, Zhang, Xinxin, Li, Feng, Bai, Jing, Chen, Jing, Jiang, Wenqi, Yang, Kaiyue, Ou, Qi, Li, Xia, Wang, Peng, Zhang, Yunpeng

The carbohydrate-active enzyme database: functions and literature by Dogan, Suzan, Henrissat, Bernard, Drula, Elodie, Terrapon, Nicolas, Garron, Marie-Line, Biodiversité et Biotechnologie Fongiques (BBF), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Architecture et fonction des macromolécules biologiques (AFMB), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Lombard, Vincent

Ensembl 2023 by Martin, Fergal J, Amode, M Ridwan, Aneja, Alisha, Austine-Orimoloye, Olanrewaju, Azov, Andrey G, Barnes, If, Becker, Arne, Bennett, Ruth, Berry, Andrew, Bhai, Jyothish, Bhurji, Simarpreet Kaur, Bignell, Alexandra, Boddu, Sanjay, Branco Lins, Paulo R, Brooks, Lucy, Ramaraju, Shashank Budhanuru, Charkhchi, Mehrnaz, Cockburn, Alexander, Da Rin Fiorretto, Luca, Davidson, Claire, Dodiya, Kamalkumar, Donaldson, Sarah, El Houdaigui, Bilal, El Naboulsi, Tamara, Fatima, Reham, Giron, Carlos Garcia, Genez, Thiago, Ghattaoraya, Gurpreet S, Martinez, Jose Gonzalez, Guijarro, Cristi, Hardy, Matthew, Hollis, Zoe, Hourlier, Thibaut, Hunt, Toby, Kay, Mike, Kaykala, Vinay, Le, Tuan, Lemos, Diana, Marques-Coelho, Diego, Marugán, José Carlos, Merino, Gabriela Alejandra, Mirabueno, Louisse Paola, Mushtaq, Aleena, Hossain, Syed Nakib, Ogeh, Denye N, Sakthivel, Manoj Pandian, Parker, Anne, Perry, Malcolm, Piližota, Ivana, Prosovetskaia, Irina, Pérez-Silva, José G, Salam, Ahamed Imran Abdul, Saraiva-Agostinho, Nuno, Schuilenburg, Helen, Sheppard, Dan, Sinha, Swati, Sipos, Botond, Stark, William, Steed, Emily, Sukumaran, Ranjit, Sumathipala, Dulika, Suner, Marie-Marthe, Surapaneni, Likhitha, Sutinen, Kyösti, Szpak, Michal, Tricomi, Francesca Floriana, Urbina-Gómez, David, Veidenberg, Andres, Walsh, Thomas A, Walts, Brandon, Wass, Elizabeth, Willhoft, Natalie, Allen, Jamie, Alvarez-Jarreta, Jorge, Chakiachvili, Marc, Flint, Bethany, Giorgetti, Stefano, Haggerty, Leanne, Ilsley, Garth R, Loveland, Jane E, Moore, Benjamin, Mudge, Jonathan M, Tate, John, Thybert, David, Trevanion, Stephen J, Winterbottom, Andrea, Frankish, Adam, Hunt, Sarah E, Ruffier, Magali, Cunningham, Fiona, Dyer, Sarah, Finn, Robert D, Howe, Kevin L, Harrison, Peter W, Yates, Andrew D, Flicek, Paul

Comparative Toxicogenomics Database (CTD): update 2023 by Davis, Allan Peter, Wiegers, Thomas C, Johnson, Robin J, Sciaky, Daniela, Wiegers, Jolene, Mattingly, Carolyn J

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022 by Xue, Yongbiao, Zhang, Zhang, He, Shunmin, Zhang, Guoqing, Li, Yixue, Chen, Runsheng, Zeng, Jingyao, Shang, Yunfei, Bu, Congfan, Zhang, Zhewen, Du, Zhenglin, Qian, Qiheng, Zong, Wenting, Du, Qiang, Zhang, Sisi, Dong, Lili, Wang, Yanqing, Yan, Xing, Yan, Haoteng, Cai, Yusheng, Zhang, Weiqi, Liu, Guanghui, Chen, Xu, Yu, Caixia, Zhu, Junwei, Sun, Yubin, Chen, Qiancheng, Zhang, Xin, Sang, Zhengqi, Wang, Yonggang, Zhao, Yilin, Chen, Huanxin, Lan, Li, Zheng, Xinchang, Chen, Meili, Jing, Wei, Liu, Chang, Wang, Guoliang, Zhao, Wei, Xiong, Zhuang, Li, Rujiao, Liu, Lin, Li, Qianpeng, Luo, Sicheng, Wang, Jiajia, Shi, Yirong, Zhou, Honghong, Yang, Fei, Li, Mengwei, Tian, Dongmei, Teng, Xufei, Song, Shuhui, Zhang, Yang, Xu, Feng, Zhou, Chenfen, Teschendorff, Andrew E, He, Yungang, Yang, Zhen, Li, Lun, Wu, Gangao, Jin, Enhui, Chen, Hua, Xue, Yu, Liu, Xingyan, Zhang, Longlong, Zhang, Shihua, Zhang, Yaping, Wang, Guodong, Li, Xin, Liu, Yuanming, Wu, Xiaoyuan, Jing, Haichun, Pan, Yitong, Shi, Leisheng, Ren, Jian, Li, Xia, Liu, Dan, Zhao, Zheng, Jiang, Tao, Zhao, Fangqing, Peng, Di, Luo, Hao, Gao, Feng, Liu, Chuijie, Su, Tianhan, Zhang, Yong E, Zhou, Yincong, Fu, Shanshan, Zhang, Weizhi, Luo, Mei, Wang, Chenwei, Liao, Xingyu, Xie, Guiyan, Yang, Dechang, Tang, Dachao, Wu, Wenyi, Gou, Yujie, Li, Xiangshang, Li, Chuan-Yun, Luo, XiaoTong

The reactome pathway knowledgebase by Jassal, Bijay, Matthews, Lisa, Viteri, Guilherme, Gong, Chuqiao, Lorente, Pascual, Fabregat, Antonio, Sidiropoulos, Konstantinos, Cook, Justin, Gillespie, Marc, Haw, Robin, Loney, Fred, May, Bruce, Milacic, Marija, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

Comparative Toxicogenomics Database (CTD): update 2021 by Davis, Allan Peter, Grondin, Cynthia J, Johnson, Robin J, Sciaky, Daniela, Wiegers, Jolene, Wiegers, Thomas C, Mattingly, Carolyn J