Fast algorithms for large-scale genome alignment and comparison by Delcher, Arthur L., Phillippy, Adam, Carlton, Jane, Salzberg, Steven L.

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Improved microbial gene identification with GLIMMER by Delcher, Arthur L., Harmon, Douglas, Kasif, Simon, White, Owen, Salzberg, Steven L.

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Alignment of whole genomes by Delcher, Arthur L., Kasif, Simon, Fleischmann, Robert D., Peterson, Jeremy, White, Owen, Salzberg, Steven L.

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Microbial gene identification using interpolated Markov models by Salzberg, Steven L., Delcher, Arthur L., Kasif, Simon, White, Owen

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Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains by Fleischmann, R D, Alland, D, Eisen, J A, Carpenter, L, White, O, Peterson, J, DeBoy, R, Dodson, R, Gwinn, M, Haft, D, Hickey, E, Kolonay, J F, Nelson, W C, Umayam, L A, Ermolaeva, M, Salzberg, S L, Delcher, A, Utterback, T, Weidman, J, Khouri, H, Gill, J, Mikula, A, Bishai, W, Jacobs, Jr, W R, Venter, J C, Fraser, C M

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dog genome: survey sequencing and comparative analysis by Kirkness, E.F, Bafna, V, Halpern, A.L, Levy, S, Remington, K, Rusch, D.B, Delcher, A.L, Pop, M, Wang, W, Fraser, C.M

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Long G4-rich enhancers target promoters via a G4 DNA-based mechanism by DeMeis, Jeffrey D, Roberts, Justin T, Delcher, Haley A, Godang, Noel L, Coley, Alexander B, Brown, Cana L, Shaw, Michael H, Naaz, Sayema, Dahal, Ayush, Alqudah, Shahem Y, Nguyen, Kevin N, Nguyen, Anita D, Paudel, Sunita S, Shell, John E, Patil, Suhas S, Dang, Hong, O'Neal, Wanda K, Knowles, Michael R, Houserova, Dominika, Gillespie, Mark N, Borchert, Glen M

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Interpolated Markov Models for Eukaryotic Gene Finding by Salzberg, Steven L., Pertea, Mihaela, Delcher, Arthur L., Gardner, Malcolm J., Tettelin, Hervé

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A Whole-Genome Assembly of Drosophila by Myers, Eugene W., Sutton, Granger G., Delcher, Art L., Dew, Ian M., Fasulo, Dan P., Flanigan, Michael J., Kravitz, Saul A., Mobarry, Clark M., Knut H. J. Reinert, Remington, Karin A., Anson, Eric L., Bolanos, Randall A., Chou, Hui-Hsien, Jordan, Catherine M., Halpern, Aaron L., Lonardi, Stefano, Beasley, Ellen M., Brandon, Rhonda C., Chen, Lin, Dunn, Patrick J., Lai, Zhongwu, Liang, Yong, Nusskern, Deborah R., Zhan, Ming, Zhang, Qing, Zheng, Xiangqun, Rubin, Gerald M., Adams, Mark D., Venter, J. Craig

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Human YRNA 4 (HY4) plasma levels are a prognostic indicator of SARS-CoV-2 infection clinical severity by Olliff, Nathaniel S, Hunt, Miles A, Paudel, Sunita S, Nguyen, Kevin N, Delcher, Haley A, DeMeis, Jeffrey D, Roberts, Justin T, Fouty, Brian W, Audia, Jonathon P, Kim, Jin H, Borchert, Glen M

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Prospective Safety Surveillance of GH-Deficient Adults: Comparison of GH-Treated vs Untreated Patients by Hartman, Mark L, Xu, Rong, Crowe, Brenda J, Robison, Leslie L, Erfurth, Eva Marie, Kleinberg, David L, Zimmermann, Alan G, Woodmansee, Whitney W, Cutler, Gordon B, Chipman, John J, Melmed, Shlomo

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The genome sequence of the malaria mosquito Anopheles gambiae by Holt, Robert A, Subramanian, G Mani, Halpern, Aaron, Sutton, Granger G, Charlab, Rosane, Nusskern, Deborah R, Wincker, Patrick, Clark, Andrew G, Ribeiro, José M C, Wides, Ron, Salzberg, Steven L, Loftus, Brendan, Yandell, Mark, Majoros, William H, Rusch, Douglas B, Lai, Zhongwu, Kraft, Cheryl L, Abril, Josep F, Anthouard, Veronique, Arensburger, Peter, Atkinson, Peter W, Baden, Holly, de Berardinis, Veronique, Baldwin, Danita, Benes, Vladimir, Biedler, Jim, Blass, Claudia, Bolanos, Randall, Boscus, Didier, Barnstead, Mary, Cai, Shuang, Center, Angela, Chaturverdi, Kabir, Christophides, George K, Chrystal, Mathew A, Clamp, Michele, Cravchik, Anibal, Curwen, Val, Dana, Ali, Delcher, Art, Dew, Ian, Evans, Cheryl A, Flanigan, Michael, Grundschober-Freimoser, Anne, Friedli, Lisa, Gu, Zhiping, Guan, Ping, Guigo, Roderic, Hillenmeyer, Maureen E, Hladun, Susanne L, Hogan, James R, Hong, Young S, Hoover, Jeffrey, Jaillon, Olivier, Ke, Zhaoxi, Kodira, Chinnappa, Kokoza, Elena, Koutsos, Anastasios, Letunic, Ivica, Levitsky, Alex, Liang, Yong, Lin, Jhy-Jhu, Lobo, Neil F, Lopez, John R, Malek, Joel A, McIntosh, Tina C, Meister, Stephan, Miller, Jason, Mobarry, Clark, Mongin, Emmanuel, Murphy, Sean D, O'Brochta, David A, Pfannkoch, Cynthia, Qi, Rong, Regier, Megan A, Remington, Karin, Shao, Hongguang, Sharakhova, Maria V, Sitter, Cynthia D, Shetty, Jyoti, Smith, Thomas J, Strong, Renee, Sun, Jingtao, Thomasova, Dana, Ton, Lucas Q, Topalis, Pantelis, Tu, Zhijian, Unger, Maria F, Walenz, Brian, Wang, Aihui, Wang, Jian, Wang, Mei, Wang, Xuelan, Woodford, Kerry J, Wortman, Jennifer R, Wu, Martin, Yao, Alison, Zdobnov, Evgeny M, Zhang, Hongyu, Zhao, Qi

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Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies by Schatz, Michael C, Phillippy, Adam M, Sommer, Daniel D, Delcher, Arthur L, Puiu, Daniela, Narzisi, Giuseppe, Salzberg, Steven L, Pop, Mihai

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The Sequence of the Human Genome by Li, Peter W., Yandell, Mark, Evans, Cheryl A., Gocayne, Jeannine D., Huson, Daniel H., Zhang, Qing, Zheng, Xiangqun H., Chen, Lin, Skupski, Marian, Nelson, Catherine, Broder, Samuel, Clark, Andrew G., Nadeau, Joe, McKusick, Victor A., Simon, Mel, Slayman, Carolyn, Halpern, Aaron, Levy, Samuel, Remington, Karin, Biddick, Kendra, Bonazzi, Vivien, Brandon, Rhonda, Charlab, Rosane, Chaturvedi, Kabir, Di Francesco, Valentina, Dunn, Patrick, Evangelista, Carlos, Gu, Zhiping, Guan, Ping, Ke, Zhaoxi, Ketchum, Karen A., Lei, Yiding, Li, Zhenya, Li, Jiayin, Liang, Yong, Lin, Xiaoying, Milshina, Natalia, Moore, Helen M., Rusch, Douglas B., Shao, Wei, Wang, Zhen Yuan, Wei, Ming-Hui, Xiao, Chunlin, Zhang, Hongyu, Zhao, Qi, Zhong, Wenyan, Spier, Gene, Ali, Feroze, Angela Center, Dodson, Kristina, Gluecksmann, Andres, Hart, Brit, Haynes, Jason, Howland, Timothy, Koduru, Shashi, May, David, McCawley, Steven, Mclntosh, Tina, McMullen, Ivy, Moy, Mee, Nelson, Keith, Pfannkoch, Cynthia, Ruhfel, Bob, Scott, Richard, Sitter, Cynthia, Wetter, Jeremy, Williams, Sherita, Windsor, Sandra, Zaveri, Karena, Campbell, Michael J., Mi, Huaiyu, Lazareva, Betty, Hatton, Thomas, Walenz, Brian, Yooseph, Shibu, Allen, David, Caminha, Marcelo, Caulk, Parris, Dombroski, Maria, Donnelly, Michael, Fosler, Carl, Gire, Harold, Glanowski, Stephen, Glasser, Kenneth, Gorokhov, Mark, Gropman, Barry, Heil, Jeremy, Henderson, Scott, Majoros, William, McDaniel, Joe, Newman, Matthew, Nguyen, Ngoc, Pan, Sue, Peck, Jim, Peterson, Marshall, Wang, Mei, Wu, David, Wu, Mitchell, Xia, Ashley, Zandieh, Ali

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Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1 by MILLER, Todd R, DELCHER, Arthur L, SALZBERG, Steven L, SAUNDERS, Elizabeth, DETTER, John C, HALDEN, Rolf U

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DAGchainer: a tool for mining segmental genome duplications and synteny by Haas, Brian J., Delcher, Arthur L., Wortman, Jennifer R., Salzberg, Steven L.

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Human, mouse, and rat genome large-scale rearrangements: stability versus speciation by Zhao, Shaying, Shetty, Jyoti, Hou, Lihua, Delcher, Arthur, Zhu, Baoli, Osoegawa, Kazutoyo, de Jong, Pieter, Nierman, William C, Strausberg, Robert L, Fraser, Claire M

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The Genome Sequence of Drosophila melanogaster by Adams, Mark D., Celniker, Susan E., Evans, Cheryl A., Amanatides, Peter G., Scherer, Steven E., Hoskins, Roger A., Galle, Richard F., Wortman, Jennifer R., Chen, Lin X., Rogers, Yu-Hui C., Blazej, Robert G., Pfeiffer, Barret D., Wan, Kenneth H., Doyle, Clare, Baxter, Evan G., Helt, Gregg, Abril, Josep F., An, Hui-Jin, Baldwin, Danita, Ballew, Richard M., Basu, Anand, Bayraktaroglu, Leyla, Beasley, Ellen M., Beeson, Karen Y., Bolshakov, Slava, Borkova, Dana, Bouck, John, Brokstein, Peter, Burtis, Kenneth C., Butler, Heather, Cadieu, Edouard, Angela Center, Cherry, J. Michael, Cawley, Simon, Davies, Peter, de Pablos, Beatriz, Dodson, Kristina, Doup, Lisa E., Ferraz, Concepcion, Fleischmann, Wolfgang, Fosler, Carl, Gabrielian, Andrei E., Garg, Neha S., Glodek, Anna, Gong, Fangcheng, Guan, Ping, Harris, Michael, Houck, Jarrett, Hostin, Damon, Houston, Kathryn A., Howland, Timothy J., Jalali, Mena, Kalush, Francis, Ke, Zhaoxi, Ketchum, Karen A., Kimmel, Bruce E., Kodira, Chinnappa D., Kraft, Cheryl, Kravitz, Saul, Lai, Zhongwu, Lei, Yiding, Li, Zhenya, Liang, Yong, Lin, Xiaoying, Mattei, Bettina, McIntosh, Tina C., McPherson, Duncan, Milshina, Natalia V., Moy, Mee, Murphy, Lee, Muzny, Donna M., Nelson, David L., Nelson, David R., Nelson, Keith A., Nixon, Katherine, Pan, Sue, Pollard, John, Reinert, Knut, Skupski, Marian P., Spier, Eugene, Stapleton, Mark, Sun, Eric, Svirskas, Robert, Turner, Russell, Venter, Eli, Wang, Xin, Wang, Zhen-Yuan, Weissenbach, Jean, Yang, Song, Yao, Q. Alison, Ye, Jane, Zhan, Ming, Zheng, Liansheng, Zhong, Wenyan, Zhou, Xiaojun, Zhu, Shiaoping, Zhu, Xiaohong, Smith, Hamilton O., Gibbs, Richard A., Rubin, Gerald M.

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Best-case results for nearest-neighbor learning by Salzberg, S., Delcher, A.L., Heath, D., Kasif, S.

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Versatile and open software for comparing large genomes by Kurtz, Stefan, Phillippy, Adam, Delcher, Arthur L, Smoot, Michael, Shumway, Martin, Antonescu, Corina, Salzberg, Steven L

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