Evolution and structure of clinically relevant gene fusions in multiple myeloma by Foltz, Steven M., Gao, Qingsong, Yoon, Christopher J., Sun, Hua, Yao, Lijun, Li, Yize, Jayasinghe, Reyka G., Cao, Song, King, Justin, Kohnen, Daniel R., Fiala, Mark A., Ding, Li, Vij, Ravi

Get full text

MIRMMR: binary classification of microsatellite instability using methylation and mutations by Foltz, Steven M, Liang, Wen-Wei, Xie, Mingchao, Ding, Li

Get full text

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously by Foltz, Steven M., Greene, Casey S., Taroni, Jaclyn N.

Get full text

Geographic analysis of urologist density and prostate cancer mortality in the United States by Yao, Nengliang, Foltz, Steven M, Odisho, Anobel Y, Wheeler, David C

Get full text

Co-evolution of tumor and immune cells during progression of multiple myeloma by Liu, Ruiyang, Gao, Qingsong, Foltz, Steven M., Fowles, Jared S., Yao, Lijun, Wang, Julia Tianjiao, Cao, Song, Sun, Hua, Wendl, Michael C., Sethuraman, Sunantha, Weerasinghe, Amila, Rettig, Michael P., Storrs, Erik P., Yoon, Christopher J., Wyczalkowski, Matthew A., McMichael, Joshua F., Kohnen, Daniel R., King, Justin, Goldsmith, Scott R., O’Neal, Julie, Fulton, Robert S., Fronick, Catrina C., Ley, Timothy J., Jayasinghe, Reyka G., Fiala, Mark A., Oh, Stephen T., DiPersio, John F., Vij, Ravi, Ding, Li

Get full text

Single-Cell Discovery and Multiomic Characterization of Therapeutic Targets in Multiple Myeloma by Yao, Lijun, Wang, Julia T, Jayasinghe, Reyka G, O'Neal, Julie, Tsai, Chia-Feng, Rettig, Michael P, Song, Yizhe, Liu, Ruiyang, Zhao, Yanyan, Ibrahim, Omar M, Fiala, Mark A, Fortier, Julie M, Chen, Siqi, Gehrs, Leah, Rodrigues, Fernanda Martins, Wendl, Michael C, Kohnen, Daniel, Shinkle, Andrew, Cao, Song, Foltz, Steven M, Zhou, Daniel Cui, Storrs, Erik, Wyczalkowski, Matthew A, Mani, Smrithi, Goldsmith, Scott R, Zhu, Ying, Hamilton, Mark, Liu, Tao, Chen, Feng, Vij, Ravi, Ding, Li, DiPersio, John F

Get full text

15. Single-cell discovery and multi-omic characterization of therapeutic targets in multiple myeloma by Yao, Lijun, Wang, Julia T., Jayasinghe, Reyka G., O'Neal, Julie, Tsai, Chia-Feng, Rettig, Michael P., Song, Yizhe, Liu, Ruiyang, Zhao, Yanyan, Ibrahim, Omar M., Fiala, Mark A., Fortier, Julie M., Chen, Siqi, Gehrs, Leah, Martins Rodrigues, Fernanda, Wendl, Michael C., Kohnen, Daniel, Shinkle, Andrew, Cao, Song, Foltz, Steven M., Cui Zhou, Daniel, Storrs, Erik, Wyczalkowski, Matthew A., Mani, Smrithi, Goldsmith, Scott R., Zhu, Ying, Hamilton, Mark, Liu, Tao, Chen, Feng, Vij, Ravi, Ding, Li, DiPersio, John F.

Get full text

Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation by Geffen, Yifat, Anand, Shankara, Akiyama, Yo, Yaron, Tomer M., Song, Yizhe, Johnson, Jared L., Govindan, Akshay, Li, Yize, Huntsman, Emily, Wang, Liang-Bo, Birger, Chet, Heiman, David I., Zhang, Qing, Miller, Mendy, Calinawan, Anna, Belkin, Saveliy, Kerelsky, Alexander, Clauser, Karl R., Krug, Karsten, Satpathy, Shankha, Payne, Samuel H., Mani, D.R., Gillette, Michael A., Dhanasekaran, Saravana M., Thiagarajan, Mathangi, Mesri, Mehdi, Rodriguez, Henry, Robles, Ana I., Lazar, Alexander J., Ding, Li, Getz, Gad, An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Cao, Song, Ceccarelli, Michele, Chinnaiyan, Arul M., Chowdhury, Shrabanti, Colaprico, Antonio, Carr, Steven A., da Veiga Leprevost, Felipe, Day, Corbin, Domagalski, Marcin J., Ellis, Matthew J., Fenyo, David, Foltz, Steven M., Francis, Alicia, Gonzalez Robles, Tania J., Gosline, Sara J.C., Gümüş, Zeynep H., Hiltke, Tara, Hong, Runyu, Hu, Yingwei, Huang, Chen, Iavarone, Antonio, Jewel, Scott D., Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Kumar-Sinha, Chandan, Krug, Karsten, Lei, Jonathan T., Liang, Wen-Wei, Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Liu, Wenke, Ma, Weiping, McKerrow, Wilson, Mesri, Mehdi, Newton, Chelsea, Omenn, Gilbert S., Paulovich, Amanda G., Petralia, Francesca, Pugliese, Pietro, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rodrigues, Fernanda Martins, Savage, Sara R., Schadt, Eric E., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Stathias, Vasileios, Storrs, Erik P., Selvan, Myvizhi Esai, Tan, Jimin, Thangudu, Ratna R., Wang, Joshua M., Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Wu, Yige, Yi, Xinpei, Zhang, Bing, Zhang, Xu, Zhang, Zhen

Get full text

Proteogenomic data and resources for pan-cancer analysis by Dou, Yongchao, Da Veiga Leprevost, Felipe, Geffen, Yifat, Calinawan, Anna P., Aguet, François, Birger, Chet, Cao, Song, Chaudhary, Rekha, Cieslik, Marcin, Colaprico, Antonio, Zhou, Daniel Cui, Day, Corbin, Domagalski, Marcin J., Fenyö, David, Foltz, Steven M., Gonzalez-Robles, Tania, Gümüş, Zeynep H., Heiman, David, Hong, Runyu, Hu, Yingwei, Jaehnig, Eric J., Ji, Jiayi, Jiang, Wen, Ketchum, Karen A., Klein, Robert J., Liao, Yuxing, Lindgren, Caleb M., Ma, Weiping, Ma, Lei, MacCoss, Michael J., Martins Rodrigues, Fernanda, Nguyen, Ngoc, Oldroyd, Robert, Reva, Boris, Rudnick, Paul, Savage, Sara R., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Singhal, Deepak, Storrs, Erik, Thangudu, Ratna R., Thiagarajan, Mathangi, Wang, Liang-Bo, Wang, Joshua M., Wen, Bo, Wu, Yige, Wyczalkowski, Matthew A., Xin, Yi, Yao, Lijun, Zhang, Hui, Zhang, Qing, Getz, Gad, Ding, Li, Nesvizhskii, Alexey I., Robles, Ana I., Payne, Samuel H., Lazar, Alexander J., Paulovich, Amanda G., Iavarone, Antonio, Chinnaiyan, Arul M., Druker, Brian J., Kumar-Sinha, Chandan, Newton, Chelsea J., Smith, Richard D., Huntsman, Emily, Schadt, Eric E., An, Eunkyung, Petralia, Francesca, Cho, Hanbyul, Rodriguez, Henry, Zhang, Hui, Kolodziejczak, Iga, Johnson, Jared L., Bavarva, Jasmin, Tan, Jimin, Clauser, Karl R., Krug, Karsten, Cantley, Lewis C., Wiznerowicz, Maciej, Anurag, Meenakshi, Mesri, Mehdi, Gillette, Michael A., Birrer, Michael J., Ceccarelli, Michele, Dhanasekaran, Saravana M., Edwards, Nathan, Tignor, Nicole, Babur, Özgün, Pugliese, Pietro, Jewell, Scott D., Satpathy, Shankha, Chowdhury, Shrabanti, Schürer, Stephan, Carr, Steven A., Hiltke, Tara, Yaron, Tomer M., Liu, Wenke, Song, Yizhe, Zhang, Zhen

Get full text

Pan-cancer proteogenomics connects oncogenic drivers to functional states by Porta-Pardo, Eduard, Bailey, Matthew H., Yaron, Tomer M., Stathias, Vasileios, Geffen, Yifat, Imbach, Kathleen J., Cao, Song, Anand, Shankara, Akiyama, Yo, Liu, Wenke, Wyczalkowski, Matthew A., Song, Yizhe, Storrs, Erik P., Wendl, Michael C., Zhang, Wubing, Sibai, Mustafa, Ruiz-Serra, Victoria, Terekhanova, Nadezhda V., Rodrigues, Fernanda Martins, Clauser, Karl R., Heiman, David I., Zhang, Qing, Aguet, Francois, Calinawan, Anna P., Birger, Chet, Satpathy, Shankha, Zhou, Daniel Cui, Wang, Liang-Bo, Baral, Jessika, Johnson, Jared L., Huntsman, Emily M., Pugliese, Pietro, Colaprico, Antonio, Iavarone, Antonio, Ricketts, Christopher J., Fenyö, David, Payne, Samuel H., Kumar-Sinha, Chandan, Lazar, Alexander J., Getz, Gad, An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Calinawan, Anna, Ceccarelli, Michele, Chan, Daniel W., Chinnaiyan, Arul M., Cho, Hanbyul, Chowdhury, Shrabanti, Day, Corbin, Domagalski, Marcin J., Dou, Yongchao, Druker, Brian J., Edwards, Nathan, Selvan, Myvizhi Esai, Foltz, Steven M., Gonzalez Robles, Tania J., Gümüş, Zeynep H., Hiltke, Tara, Hostetter, Galen, Hu, Yingwei, Huang, Chen, Huntsman, Emily, Jaehnig, Eric J., Jewel, Scott D., Ji, Jiayi, Jiang, Wen, Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Lei, Jonathan T., Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Ma, Weiping, McKerrow, Wilson, Nesvizhskii, Alexey I., Oldroyd, Robert, Omenn, Gilbert S., Petralia, Francesca, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rykunov, Dmitry, Savage, Sara R., Schadt, Eric E., Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Song, Xiaoyu, Tan, Jimin, Wang, Joshua M., Wang, Pei, Wen, Bo, Wiznerowicz, Maciej, Yi, Xinpei, Zhang, Bing, Zhang, Xu, Zhang, Zhen

Get full text

Pan-cancer proteogenomics characterization of tumor immunity by Yaron, Tomer M., Caruso, Francesca Pia, Tignor, Nicole, Wang, Joshua M., Charytonowicz, Daniel, Johnson, Jared L., Huntsman, Emily M., Marino, Giacomo B., Calinawan, Anna, Evangelista, John Erol, Selvan, Myvizhi Esai, Chowdhury, Shrabanti, Krek, Azra, Song, Xiaoyu, Turhan, Berk, Lewis, David A., Deng, Eden Z., Clarke, Daniel J.B., Whiteaker, Jeffrey R., Kennedy, Jacob J., Zhao, Lei, Segura, Rossana Lazcano, Batra, Harsh, Raso, Maria Gabriela, Parra, Edwin Roger, Soundararajan, Rama, Tang, Ximing, Satpathy, Shankha, Wang, Ying, Wiznerowicz, Maciej, Iavarone, Antonio, Reva, Boris, Robles, Ana I., Mani, D.R., Gillette, Michael A., Cieslik, Marcin, Paulovich, Amanda G., Sebra, Robert, Gümüş, Zeynep H., Hostetter, Galen, Fenyö, David, Cantley, Lewis C., Lazar, Alexander J., Wang, Pei, Abelin, Jennifer, Akiyama, Yo, Anurag, Meenakshi, Bavarva, Jasmin, Birger, Chet, Chinnaiyan, Arul M., Cho, Hanbyul, Clauser, Karl, Colaprico, Antonio, da Veiga Leprevost, Felipe, Day, Corbin, Dhanasekaran, Saravana M., Ding, Li, Dou, Yongchao, Druker, Brian J., Edwards, Nathan, Foltz, Steven M., Francis, Alicia, Geffen, Yifat, Heiman, David I., Hu, Yingwei, Jaehnig, Eric J., Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Krug, Karsten, Lei, Jonathan T., Liang, Wen-Wei, Liao, Yuxing, Liu, Tao, Liu, Wenke, McKerrow, Wilson, Mesri, Mehdi, Mumphrey, Michael Brodie, Newton, Chelsea J., Payne, Samuel H., Rodland, Karin D., Rodrigues, Fernanda Martins, Savage, Sara R., Schnaubelt, Michael, Schürer, Stephan, Shi, Zhiao, Smith, Richard D., Song, Feng, Storrs, Erik P., Tan, Jimin, Terekhanova, Nadezhda V., Thangudu, Ratna R., Thiagarajan, Mathangi, Wu, Yige, Wyczalkowski, Matthew A., Yao, Lijun, Li, Qing Kay, Zhang, Hui, Zhang, Xu, Zhang, Zhen

Get full text

Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin by Liang, Wen-Wei, Jayasinghe, Reyka G., Foltz, Steven M., Porta-Pardo, Eduard, Geffen, Yifat, Wendl, Michael C., Lazcano, Rossana, Kolodziejczak, Iga, Song, Yizhe, Govindan, Akshay, Demicco, Elizabeth G., Li, Xiang, Li, Yize, Sethuraman, Sunantha, Payne, Samuel H., Wiznerowicz, Maciej, Shen, Hui, Lazar, Alexander J., Robles, Ana I., Ding, Li, Aguet, François, Akiyama, Yo, An, Eunkyung, Anand, Shankara, Babur, Ozgun, Bavarva, Jasmin, Birger, Chet, Birrer, Michael, Cao, Song, Ceccarelli, Michele, Chan, Daniel, Chinnaiyan, Arul, Cho, Hanbyul, Chowdhury, Shrabanti, Clauser, Karl, Colaprico, Antonio, Zhou, Daniel Cui, Day, Corbin, Dhanasekaran, Mohan, Domagalski, Marcin, Dou, Yongchao, Druker, Brian, Ellis, Matthew, Selvan, Myvizhi Esai, Francis, Alicia, Getz, Gad, Robles, Tania Gonzalez, Gosline, Sara, Heiman, David, Hiltke, Tara, Hostetter, Galen, Huang, Chen, Huntsman, Emily, Iavarone, Antonio, Jewel, Scott, Jiang, Wen, Lee Johnson, Jared, Katsnelson, Lizabeth, Ketchum, Karen, Krug, Karsten, Kumar-Sinha, Chandan, Lei, Jonathan, Liao, Yuxing, Lindgren, Caleb, Liu, Tao, Liu, Wenke, Ma, Weiping, Rodrigues, Fernanda Martins, McKerrow, Wilson, Mesri, Mehdi, Newton, Chelsea, Oldroyd, Robert, Paulovich, Amanda, Petralia, Francesca, Pugliese, Pietro, Reva, Boris, Ruggles, Kelly, Rykunov, Dmitry, Satpathy, Shankha, Savage, Sara, Schadt, Eric, Schnaubelt, Michael, Schraink, Tobias, Smith, Dick, Song, Xiaoyu, Storrs, Erik, Terekhanova, Nadezhda, Thangudu, Ratna, Wang, Joshua, Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Yaron, Tomer M., Zhang, Bing, Zhang, Qing, Zhang, Zhen, Chan, Daniel W., Dhanasekaran, Saravana M., Schürer, Stephan, Smith, Richard D.

Get full text

Myeloma Cell Associated Therapeutic Protein Discovery Using Single Cell RNA-Seq Data by Yao, Lijun, Jayasinghe, Reyka G, Wang, Tianjiao, O'Neal, Julie, Liu, Ruiyang, Rettig, Michael P., Tsai, Chia-Feng, Foltz, Steven M., Kohnen, Danny, Mani, Smrithi, Martins Rodrigues, Fernanda, Wendl, Michael C., Wyczalkowski, Matthew A., Goldsmith, Scott R., Zhu, Ying, Fiala, Mark A, Tao, Liu, Vij, Ravi, Ding, Li, DiPersio, John F.

Get full text

Characterization of Germline Variants in Multiple Myeloma by Martins Rodrigues, Fernanda, Gao, Qingsong, Huang, Kuan-lin, Scott, Adam David, Foltz, Steven M., King, Justin, Fiala, Mark A., Kohnen, Daniel R., DiPersio, John F., Vij, Ravi, Ding, Li

Get full text

Comprehensive Multi-Omics Analysis of Gene Fusions in a Large Multiple Myeloma Cohort by Foltz, Steven M., Gao, Qingsong, Yoon, Christopher J., Weerasinghe, Amila, Sun, Hua, Yao, Lijun, Fiala, Mark A., Kohnen, Daniel R., King, Justin, Ju, Yeong Seok, DiPersio, John F., Vij, Ravi, Ding, Li

Get full text

Single-Cell Transcriptomic and Proteomic Diversity in Multiple Myeloma by Jayasinghe, Reyka G, Wu, Yige, Zhu, Ying, Liu, Ruiyang, Fiala, Mark A., Kohnen, Daniel R., Tsai, Chia-Feng, Mani, Smrithi, King, Justin, Rettig, Michael P., O'Neal, Julie, Wang, Tianjiao, Foltz, Steven M., Yao, Lijun, Sun, Hua, Fronick, Catrina, Goldsmith, Scott R., DiPersio, John F., Vij, Ravi, Tao, Liu, Ding, Li

Get full text

Deep learning integrates histopathology and proteogenomics at a pan-cancer level by Wang, Joshua M, Hong, Runyu, Demicco, Elizabeth G, Tan, Jimin, Lazcano, Rossana, Moreira, Andre L, Li, Yize, Calinawan, Anna, Razavian, Narges, Schraink, Tobias, Gillette, Michael A, Omenn, Gilbert S, An, Eunkyung, Rodriguez, Henry, Tsirigos, Aristotelis, Ruggles, Kelly V, Ding, Li, Robles, Ana I, Mani, D.R, Rodland, Karin D, Lazar, Alexander J, Liu, Wenke, Fenyö, David

Get full text

OpenPBTA: The Open Pediatric Brain Tumor Atlas by Shapiro, Joshua A, Gaonkar, Krutika S, Spielman, Stephanie J, Savonen, Candace L, Bethell, Chante J, Jin, Run, Rathi, Komal S, Zhu, Yuankun, Egolf, Laura E, Farrow, Bailey K, Miller, Daniel P, Yang, Yang, Koganti, Tejaswi, Noureen, Nighat, Koptyra, Mateusz P, Duong, Nhat, Santi, Mariarita, Kim, Jung, Robins, Shannon, Storm, Phillip B, Mack, Stephen C, Lilly, Jena V, Xie, Hongbo M, Jain, Payal, Raman, Pichai, Rood, Brian R, Lulla, Rishi R, Nazarian, Javad, Kraya, Adam A, Vaksman, Zalman, Heath, Allison P, Kline, Cassie, Scolaro, Laura, Viaene, Angela N, Huang, Xiaoyan, Way, Gregory P, Foltz, Steven M, Zhang, Bo, Poetsch, Anna R, Mueller, Sabine, Ennis, Brian M, Prados, Michael, Diskin, Sharon J, Zheng, Siyuan, Guo, Yiran, Kannan, Shrivats, Waanders, Angela J, Margol, Ashley S, Kim, Meen Chul, Hanson, Derek, Van Kuren, Nicholas, Wong, Jessica, Kaufman, Rebecca S, Coleman, Noel, Blackden, Christopher, Cole, Kristina A, Mason, Jennifer L, Madsen, Peter J, Koschmann, Carl J, Stewart, Douglas R, Wafula, Eric, Brown, Miguel A, Resnick, Adam C, Greene, Casey S, Rokita, Jo Lynne, Taroni, Jaclyn N

Get full text

AAV-mediated transfer of FKRP shows therapeutic efficacy in a murine model but requires control of gene expression by Gicquel, Evelyne, Maizonnier, Natacha, Foltz, Steven J, Martin, William J, Bourg, Nathalie, Svinartchouk, Fedor, Charton, Karine, Beedle, Aaron M, Richard, Isabelle

Get full text

Mitochondrial maintenance via autophagy contributes to functional skeletal muscle regeneration and remodeling by Nichenko, Anna S, Southern, W Michael, Atuan, Mark, Luan, Junna, Peissig, Kristen B, Foltz, Steven J, Beedle, Aaron M, Warren, Gordon L, Call, Jarrod A

Get full text