RNAcentral 2021: secondary structure integration, improved sequence search and new member databases by Sweeney, Blake A, Petrov, Anton I, Ribas, Carlos E, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Seemann, Stefan E, Gorodkin, Jan, Cannone, Jamie J, Gutell, Robin R, Kay, Simon, Marygold, Steven, dos Santos, Gil, Frankish, Adam, Mudge, Jonathan M, Barshir, Ruth, Fishilevich, Simon, Chan, Patricia P, Lowe, Todd M, Seal, Ruth, Bruford, Elspeth, Panni, Simona, Porras, Pablo, Karagkouni, Dimitra, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Volders, Pieter-Jan, Mestdagh, Pieter, Griffiths-Jones, Sam, Fromm, Bastian, Peterson, Kevin J, Kalvari, Ioanna, Nawrocki, Eric P, Petrov, Anton S, Weng, Shuai, Bouchard-Bourelle, Philia, Scott, Michelle, Lui, Lauren M, Hoksza, David, Lovering, Ruth C, Kramarz, Barbara, Mani, Prita, Ramachandran, Sridhar, Weinberg, Zasha

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RNAcentral: a hub of information for non-coding RNA sequences by Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P

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Tracking and coordinating an international curation effort for the CCDS Project by Harte, Rachel A, Farrell, Catherine M, Loveland, Jane E, Suner, Marie-Marthe, Wilming, Laurens, Aken, Bronwen, Barrell, Daniel, Frankish, Adam, Wallin, Craig, Searle, Steve, Diekhans, Mark, Harrow, Jennifer, Pruitt, Kim D

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Pangenome graph construction from genome alignments with Minigraph-Cactus by Hickey, Glenn, Monlong, Jean, Ebler, Jana, Novak, Adam M., Eizenga, Jordan M., Gao, Yan, Marschall, Tobias, Li, Heng, Paten, Benedict

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Effect of Scattered-Site Housing Using Rent Supplements and Intensive Case Management on Housing Stability Among Homeless Adults With Mental Illness: A Randomized Trial by Stergiopoulos, Vicky, Hwang, Stephen W, Gozdzik, Agnes, Nisenbaum, Rosane, Latimer, Eric, Rabouin, Daniel, Adair, Carol E, Bourque, Jimmy, Connelly, Jo, Frankish, James, Katz, Laurence Y, Mason, Kate, Misir, Vachan, O’Brien, Kristen, Sareen, Jitender, Schütz, Christian G, Singer, Arielle, Streiner, David L, Vasiliadis, Helen-Maria, Goering, Paula N

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Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel by Delaneau, Olivier, Marchini, Jonathan

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Recombination between heterologous human acrocentric chromosomes by Guarracino, Andrea, Buonaiuto, Silvia, de Lima, Leonardo Gomes, Potapova, Tamara, Rhie, Arang, Koren, Sergey, Rubinstein, Boris, Fischer, Christian, Gerton, Jennifer L., Phillippy, Adam M., Colonna, Vincenza, Garrison, Erik

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Increased mutation and gene conversion within human segmental duplications by Vollger, Mitchell R., Dishuck, Philip C., Harvey, William T., DeWitt, William S., Guitart, Xavi, Goldberg, Michael E., Rozanski, Allison N., Lucas, Julian, Asri, Mobin, Munson, Katherine M., Lewis, Alexandra P., Hoekzema, Kendra, Logsdon, Glennis A., Porubsky, David, Paten, Benedict, Harris, Kelley, Hsieh, PingHsun, Eichler, Evan E.

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CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods by Jain, Shantanu, Bakolitsa, Constantina, Brenner, Steven E., Radivojac, Predrag, Moult, John, Repo, Susanna, Hoskins, Roger A., Andreoletti, Gaia, Barsky, Daniel, Chellapan, Ajithavalli, Chu, Hoyin, Dabbiru, Navya, Kollipara, Naveen K., Ly, Melissa, Neumann, Andrew J., Pal, Lipika R., Odell, Eric, Pandey, Gaurav, Peters-Petrulewicz, Robin C., Srinivasan, Rajgopal, Yee, Stephen F., Yeleswarapu, Sri Jyothsna, Zuhl, Maya, Adebali, Ogun, Patra, Ayoti, Beer, Michael A., Hosur, Raghavendra, Peng, Jian, Bernard, Brady M., Berry, Michael, Dong, Shengcheng, Boyle, Alan P., Adhikari, Aashish, Chen, Jingqi, Hu, Zhiqiang, Wang, Robert, Wang, Yaqiong, Miller, Maximilian, Wang, Yanran, Bromberg, Yana, Turina, Paola, Capriotti, Emidio, Han, James J., Ozturk, Kivilcim, Carter, Hannah, Babbi, Giulia, Bovo, Samuele, Di Lena, Pietro, Martelli, Pier Luigi, Savojardo, Castrense, Casadio, Rita, Cline, Melissa S., De Baets, Greet, Bonache, Sandra, Díez, Orland, Gutiérrez-Enríquez, Sara, Fernández, Alejandro, Montalban, Gemma, Ootes, Lars, Özkan, Selen, Padilla, Natàlia, Riera, Casandra, De la Cruz, Xavier, Diekhans, Mark, Huwe, Peter J., Wei, Qiong, Xu, Qifang, Dunbrack, Roland L., Gotea, Valer, Elnitski, Laura, Margolin, Gennady, Fariselli, Piero, Kulakovskiy, Ivan V., Makeev, Vsevolod J., Penzar, Dmitry D., Vorontsov, Ilya E., Favorov, Alexander V., Forman, Julia R., Hasenahuer, Marcia, Fornasari, Maria S., Parisi, Gustavo, Avsec, Ziga, Çelik, Muhammed H., Nguyen, Thi Yen Duong, Gagneur, Julien, Shi, Fang-Yuan, Edwards, Matthew D., Guo, Yuchun, Tian, Kevin, Zeng, Haoyang, Gifford, David K., Göke, Jonathan, Zaucha, Jan, Gough, Julian, Ritchie, Graham R. S., Frankish, Adam, Mudge, Jonathan M., Harrow, Jennifer, Young, Erin L., Yu, Yao

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Gaps and complex structurally variant loci in phased genome assemblies by Porubsky, David, Vollger, Mitchell R, Harvey, William T, Rozanski, Allison N, Ebert, Peter, Hickey, Glenn, Hasenfeld, Patrick, Sanders, Ashley D, Stober, Catherine, Korbel, Jan O, Paten, Benedict, Marschall, Tobias, Eichler, Evan E

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Protocol for the development of the Chatbot Assessment Reporting Tool (CHART) for clinical advice by Huo, Bright, McKechnie, Tyler, Chartash, David, Marshall, Iain J, Moher, David, Ng, Jeremy Y, Loder, Elizabeth, Feeney, Timothy, Chan, An-Wen, Berkwits, Michael, Flanagin, Annette, Antoniou, Stavros A, Laine, Christine, Collins, Gary S, Saha, Ashirbani, Mathur, Piyush, Iorio, Alfonso, Lee, Yung, Samuel, Diana, Frankish, Helen, Ortenzi, Monica, Mayol, Julio, Lokker, Cynthia, Agoritsas, Thomas, Vandvik, Per Olav, Foroutan, Farid, Meerpohl, Joerg J, Campos, Hugo, Canfield, Carolyn, Lao, Xufei, Chen, Yaolong, Harvey, Hugh, Loeb, Stacy, Agha, Riaz, Ramji, Karim, Ahmed, Hassaan, Boudreau, Vanessa, Guyatt, Gordon

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Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function by Ezkurdia, Iakes, del Pozo, Angela, Frankish, Adam, Rodriguez, Jose Manuel, Harrow, Jennifer, Ashman, Keith, Valencia, Alfonso, Tress, Michael L

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RNAcentral: a hub of information for non-coding RNA sequences by Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P

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The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates by Mudge, Jonathan M., Frankish, Adam, Fernandez-Banet, Julio, Alioto, Tyler, Derrien, Thomas, Howald, Cédric, Reymond, Alexandre, Guigó, Roderic, Hubbard, Tim, Harrow, Jennifer

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Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome by Lee, HoJoon, Greer, Stephanie U, Pavlichin, Dmitri S, Zhou, Bo, Urban, Alexander E, Weissman, Tsachy, Ji, Hanlee P

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Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence by Taudien, Stefan, Galgoczy, Petra, Huse, Klaus, Reichwald, Kathrin, Schilhabel, Markus, Szafranski, Karol, Shimizu, Atsushi, Asakawa, Shuichi, Frankish, Adam, Loncarevic, Ivan F, Shimizu, Nobuyoshi, Siddiqui, Roman, Platzer, Matthias

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Validation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus by Wen, Gaiping, Ramser, Juliane, Taudien, Stefan, Gausmann, Ulrike, Blechschmidt, Karin, Frankish, Adam, Ashurst, Jennifer, Meindl, Alfons, Platzer, Matthias

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Erratum: The DNA sequence and biological annotation of human chromosome 1 by Kaul, R., Dunham, A., Woodfine, K., Jones, M. C., McDonald, L., Evans, R., Phillips, K., Atkinson, A., Cooper, R., Hall, R. E., Andrews, T. D., Lloyd, C., Ambrose, K. D., Anderson, F., Andrew, R. W., Ashwell, R. I. S., Aubin, K., Babbage, A. K., Bagguley, C. L., Bailey, J., Banerjee, R., Beasley, H., Bird, C. P., Bray-Allen, S., Brown, J. Y., Brown, A. J., Bryant, S. P., Buckley, D., Burton, J., Chapman, J. C., Clarke, G., Clee, C., Clegg, S. M., Cobley, V., Collier, R. E., Corby, N., Deadman, R., Dhami, P., Dunn, M., Ellington, A. G., Errington, H., Faulkner, L. M., Frankish, A., French, L., Garner, P., Garnett, J., Ghori, M. R. J., Gibson, R., Gillett, W., Grafham, D. V., Griffiths, C., Grocock, R., Harrison, E. S. I., Heath, P. D., Holmes, S., Hunt, S. E., Hunter, G., Isherwood, J., James, R., Johnson, C., Johnson, D., Joy, A., Kimberley, A. M., King, A., Langford, C. F., Lawlor, S., Leongamornlert, D. A., Lloyd, D. M., Loveland, J., Lovell, J., Lush, M. J., Lyne, R., Martin, S., Matthews, N. S. W., McLaren, S., oore, M. J. F. M., O'Dell, C. N., Patel, D., Peck, A. I., Pelan, S., Phillimore, B. J., Plumb, R., Raymond, C., Saenphimmachak, C., Shownkeen, R., Sims, S., Skuce, C. D., Smith, M., White, S., Williams, H., Wilming, L., Wray, P. W., Wu, Z., Vaudin, M., Durbin, R., Hubbard, T., Carter, N. P., McVean, G., Beck, S., Bentley, D. R.

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The GENCODE human gene set by Searle, S, Frankish, A, Bignell, A, Aken, B, Derrien, T, Diekhans, M, Harte, R, Howald, C, Kokocinski, F, Lin, M, Tress, M, Van Baren, M, Barnes, I, Hunt, T, Carvalho-Silva, D, Davidson, C, Donaldson, S, Gilbert, J, Kay, M, Lloyd, D, Loveland, J, Mudge, J, Snow, C, Vamathevan, J, Wilming, L, Brent, M, Gerstein, M, Guigó, R, Kellis, M, Reymond, A, Zadissa, A, Valencia, A, Harrow, J, Hubbard, T

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Toward dual-process theory 3.0 by Frankish, Keith

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