TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data by Colaprico, Antonio, Silva, Tiago C, Olsen, Catharina, Garofano, Luciano, Cava, Claudia, Garolini, Davide, Sabedot, Thais S, Malta, Tathiane M, Pagnotta, Stefano M, Castiglioni, Isabella, Ceccarelli, Michele, Bontempi, Gianluca, Noushmehr, Houtan

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Regulated interaction of ID2 with the anaphase-promoting complex links progression through mitosis with reactivation of cell-type-specific transcription by Lee, Sang Bae, Garofano, Luciano, Ko, Aram, D’Angelo, Fulvio, Frangaj, Brulinda, Sommer, Danika, Gan, Qiwen, Kim, KyeongJin, Cardozo, Timothy, Iavarone, Antonio, Lasorella, Anna

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A metabolic function of FGFR3-TACC3 gene fusions in cancer by Frattini, Véronique, Pagnotta, Stefano M., Tala, Fan, Jerry J., Russo, Marco V., Lee, Sang Bae, Garofano, Luciano, Zhang, Jing, Shi, Peiguo, Lewis, Genevieve, Sanson, Heloise, Frederick, Vanessa, Castano, Angelica M., Cerulo, Luigi, Rolland, Delphine C. M., Mall, Raghvendra, Mokhtari, Karima, Elenitoba-Johnson, Kojo S. J., Sanson, Marc, Huang, Xi, Ceccarelli, Michele, Lasorella, Anna, Iavarone, Antonio

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Knowing Is Better than Wondering: The Cataloging of Natural Heritage between Museum Studies and Crime by Franza, Annarita, Scali, Federica, Garofano, Luciano, Pratesi, Giovanni

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A map of tumor–host interactions in glioma at single-cell resolution by Caruso, Francesca Pia, Garofano, Luciano, D'Angelo, Fulvio, Yu, Kai, Tang, Fuchou, Yuan, Jinzhou, Zhang, Jing, Cerulo, Luigi, Pagnotta, Stefano M, Bedognetti, Davide, Sims, Peter A, Suvà, Mario, Su, Xiao-Dong, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele

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Glioblastoma hijacks neuronal mechanisms for brain invasion by Venkataramani, Varun, Yang, Yvonne, Schubert, Marc Cicero, Reyhan, Ekin, Tetzlaff, Svenja Kristin, Wißmann, Niklas, Botz, Michael, Soyka, Stella Judith, Beretta, Carlo Antonio, Pramatarov, Rangel Lyubomirov, Fankhauser, Laura, Garofano, Luciano, Freudenberg, Alexander, Wagner, Julia, Tanev, Dimitar Ivanov, Ratliff, Miriam, Xie, Ruifan, Kessler, Tobias, Hoffmann, Dirk C., Hai, Ling, Dörflinger, Yvette, Hoppe, Simone, Yabo, Yahaya A., Golebiewska, Anna, Niclou, Simone P., Sahm, Felix, Lasorella, Anna, Slowik, Martin, Döring, Leif, Iavarone, Antonio, Wick, Wolfgang, Kuner, Thomas, Winkler, Frank

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Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma by Ceccarelli, Michele, Salama, Sofie R., Manyam, Ganiraju, Zoppoli, Pietro, Grifford, Mia, Rao, Arvind, Lau, Ching C., Huse, Jason, Zheng, Siyuan, Hess, Kenneth, Rao, Ganesh, Beroukhim, Rameen, Akbani, Rehan, Wrensch, Margaret, Haussler, David, Aldape, Kenneth D., Anjum, Samreen, Balu, Saianand, Barnett, Gene, Black, Keith L., Bristow, Christopher A., Chen, Qing-Rong, Cho, Juok, Chuah, Eric, Chudamani, Sudha, Cohen, Mark L., Couce, Marta, Davidsen, Tanja, Davis, Amy, Elder, J. Bradley, Eschbacher, Jennifer M., Fehrenbach, Ashley, Ferguson, Martin, Fuller, Gregory, Fulop, Jordonna, Garofano, Luciano, Gastier-Foster, Julie M., Gehlenborg, Nils, Gerken, Mark, Gibson, William J., Hadjipanayis, Angela, Hayes, D. Neil, Hilty, Joe, Hoyle, Alan P., Jones, Corbin D., Jones, Steven J.M., Ju, Zhenlin, Kastl, Alison, Kendler, Ady, Kucherlapati, Raju, Lichtenberg, Tara M., Lin, Pei, Ljubimova, Julia Y., Lu, Yiling, Ma, Yussanne, Maglinte, Dennis T., Marra, Marco A., Meng, Shaowu, Miller, C. Ryan, Mills, Gordon B., Mose, Lisle E., Naska, Theresa, Noble, Michael S., Noss, Ardene, Palmer, Cheryl, Parfenov, Michael, Parker, Joel S., Perou, Charles M., Pihl, Todd, Protopopov, Alexei, Ramirez, Nilsa C., Saksena, Gordon, Schein, Jacqueline E., Shen, Hui, Shi, Yan, Shimmel, Kristen, Sicotte, Hugues, Sifri, Suzanne, Silva, Tiago, Singh, Rosy, Song, Xingzhi, Souza, Camila, Sun, Huandong, Sun, Charlie, Tang, Jiabin, Trevisan, Felipe Amstalden, Van Den Berg, David J., Voet, Doug, Wang, Zhining, Weinstein, John N., Weisenberger, Daniel J., Wilkerson, Matthew D., Williams, Felicia, Wise, Lisa, Xu, Andrew W., Yang, Lixing, Zack, Travis I., Zhang, Jianhua, Zhang, Wei, Zmuda, Erik

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Proteogenomic and metabolomic characterization of human glioblastoma by Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Rykunov, Dmitry, Cornwell, MacIntosh, Petralia, Francesca, Wu, Yige, Reva, Boris, Kawaler, Emily, Olsen, Lindsey K., Liang, Wen-Wei, Wendl, Michael C., Caravan, Wagma, Ji, Jiayi, Petyuk, Vladislav A., Moon, Jamie, Moore, Ronald J., Krek, Azra, Zhu, Houxiang, McMichael, Joshua F., Lu, Shuangjia, Baral, Jessika, Yao, Lijun, Zink, Erika, Bloodsworth, Kent J., Satpathy, Shankha, Boca, Simina M., Chen, Feng, Ketchum, Karen A., Boja, Emily S., Hiltke, Tara, Mani, D.R., Chen, Xi S., Li, Qing Kay, Kim, Albert H., Fenyö, David, Mesri, Mehdi, Resnick, Adam C., Wang, Pei, Chheda, Milan G., Barnholtz-Sloan, Jill S., Rodland, Karin D., Liu, Tao, Ding, Li, Bauer, Thomas, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna P., Carr, Steven A., Chan, Daniel W., Charamut, Alyssa, Chesla, David, Chowdhury, Shrabanti, Cieślik, Marcin P., Culpepper, Houston, Demir, Emek, Dhir, Rajiv, Duffy, Elizabeth, Edwards, Robert, Gabriel, Stacey, Gabrovski, Nikolay, Garofano, Luciano, Gillette, Michael A., Hannick, Linda I., Hindenach, Barbara, Hoadley, Katherine A., Hostetter, Galen, Huang, Chen, Jaehnig, Eric, Ji, Nan, Jones, Corbin D., Kaspera, Wojciech, Lei, Jonathan, Li, Kai, Liu, Hongwei, Lubínski, Jan, Malc, Ewa, Malovannaya, Anna, McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Modugno, Francesmary, Ozbek, Umut, Paulovich, Amanda G., Piehowski, Paul D., Polonskaya, Larisa, Pruetz, Barbara, Ramkissoon, Shakti, Riggins, Gregory, Stawicki, Jakub, Tabor, Dave, Tansil, Darlene, Traer, Elie, Vatanian, Negin, Webster, Alex, Wen, Bo, Whiteaker, Jeffrey R., Zhang, Liwei, Zhao, Grace

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Glioma progression is shaped by genetic evolution and microenvironment interactions by Varn, Frederick S., Johnson, Kevin C., Martinek, Jan, Huse, Jason T., Wesseling, Pieter, Cooper, Lee A.D., Malta, Tathiane M., Wade, Taylor E., Brat, Daniel, Aldape, Kenneth, Ismail, Azzam, Kim, Hoon, White, Kieron, Pollock, Steven, Goldfarb, Christine, Lee, Ga-Hyun, Anderson, Kevin J., Nehar-Belaid, Djamel, Bakas, Spyridon, Byrne, Annette T., D’Angelo, Fulvio, Gan, Hui K., Khasraw, Mustafa, Migliozzi, Simona, Paek, Sun Ha, Walenkamp, Annemiek M.E., Weiss, Tobias, Poisson, Laila M., Noushmehr, Houtan, Iavarone, Antonio, Verhaak, Roel G.W., Varn, Frederick S., Huse, Jason T., Nasrallah, MacLean P., Wesseling, Pieter, Cooper, Lee A.D., Malta, Tathiane M., Sabedot, Thais S., Brat, Daniel, Gould, Peter V., Aldape, Kenneth, Sivajothi, Santhosh K., Barthel, Floris P., Kocakavuk, Emre, Ahmed, Nazia, White, Kieron, Moon, Hyo-Eun, Pollock, Steven, Lee, Ga-Hyun, Garofano, Luciano, Anderson, Kevin J., Nehar-Belaid, Djamel, Barnholtz-Sloan, Jill S., Bakas, Spyridon, Byrne, Annette T., Gan, Hui K., Khasraw, Mustafa, Ryan Ormond, D., Ha Paek, Sun, Van Meir, Erwin G., Walenkamp, Annemiek M.E., Watts, Colin, Weiss, Tobias, Weller, Michael, Amin, Samirkumar B., Brodbelt, Andrew, Bulsara, Ketan R., Castro, Ana Valeria, Connelly, Jennifer M., Costello, Joseph F., Finocchiaro, Gaetano, French, Pim J., Hau, Ann C., Hong, Chibo, Horbinski, Craig, Kannan, Kasthuri S., Kouwenhoven, Mathilde CM, LaViolette, Peter S., Ligon, Keith L., Lowman, Allison K., Miletic, Hrvoje, Niers, Johanna M., Phillips, Joanna J., Rabadan, Raul, Rao, Ganesh, Reifenberger, Guido, Sanai, Nader, Short, Susan C., Suzuki, Hiromichi, Tabatabai, Ghazaleh, Tomaszewski, William H., Wells, Michael, Wheeler, Helen, Xie, Jichun, Alfred Yung, W.K., Zadeh, Gelareh, Poisson, Laila M., Noushmehr, Houtan, Iavarone, Antonio, Verhaak, Roel GW

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Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma by Savage, Sara R., Eguez, Rodrigo Vargas, Li, Yize, Jaehnig, Eric J., Cieślik, Marcin, Chang, Hui-Yin, Li, Kai, Li, Qing Kay, Clark, David J., Hu, Yingwei, Cao, Liwei, Wang, Yuefan, Cho, Kyung-Cho, Liao, Yuxing, Anurag, Meenakshi, Ji, Jiayi, Zhou, Daniel Cui, Carr, Steven A., Zhang, Zhen, Chen, Xi S., Pico, Alexander R., Kinsinger, Christopher R., Robles, Ana I., An, Eunkyung, Hiltke, Tara, Mesri, Mehdi, Weaver, Alissa M., Sikora, Andrew G., Wierzbicka, Małgorzata, Wiznerowicz, Maciej, Satpathy, Shankha, Gillette, Michael A., Miles, George, Ellis, Matthew J., Omenn, Gilbert S., Boja, Emily S., Dhanasekaran, Saravana M., Agarwal, Anupriya, Avanessian, Shayan C., Bathe, Oliver F., Birger, Chet, Birrer, Michael J., Bocik, William E., Borate, Uma, Borucki, Melissa, Cai, Shuang, Charamut, Alyssa, Chen, Lin S., Chowdhury, Shrabanti, Clauser, Karl R., Culpepper, Houston, Czernicki, Tomasz, D'Angelo, Fulvio, Domagalski, Marcin J., Dyer, Maureen, Edwards, Nathan J., Ermakova, Tatiana S., Francis, Alicia, Goldthwaite, Charles A., Hannick, Linda I., Hayes, David N., Heiman, David, Jewell, Scott D., Jones, Corbin D., Krek, Azra, Liu, Tao, Ma, Weiping, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Marrero-Oliveras, Annette, McGee, John, Mieczkowski, Piotr, Newton, Chelsea J., Ozbek, Umut, Payne, Samuel H., Pazardzhikliev, Dimitar Dimitrov, Petralia, Francesca, Piehowski, Paul D., Polonskaya, Larisa, Ponomareva, Elena V., Qu, Ning, Ramkissoon, Shakti, Reva, Boris, Richey, Shannon, Robinson, Karna, Roche, Nancy, Rodland, Karin, Shi, Yan, Shutack, Yvonne, Sokoll, Lori J., Stein, Stephen E., Szopa, Wojciech, Tyner, Jeffrey, Vasilev, Lyubomir Valkov, Whiteaker, Jeffrey R., Wu, Yige, Yi, Xinpei, Zakhartsev, Yuriy, Zhao, Grace

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EPCO-35. IDENTIFICATION OF DIVERSE IMMUNE PHENOTYPES IN NF-1 GLIOMA BY SINGLE NUCLEI GENE EXPRESSION ANALYSIS by Garofano, Luciano, Oh, Young Taek, Najac, Ryan D, Ceccarelli, Michele, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EPCO-05. DIFFERENTIAL MOLECULAR PROFILING OF IDH WILD TYPE GLIOBLASTOMA SURVIVORS REVEALS THE ASSOCIATION OF NEOANTIGEN QUALITY WITH EXCEPTIONAL LONG SURVIVAL by D'Angelo, Fulvio, Garofano, Luciano, Aoki, Kosuke, Ceccarelli, Michele, Lasorella, Anna, Sanson, Marc, Iavarone, Antonio

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Treatment of metabolic acidosis with sodium bicarbonate delays progression of chronic kidney disease: the UBI Study by Di Iorio, Biagio R., Bellasi, Antonio, Raphael, Kalani L., Santoro, Domenico, Aucella, Filippo, Garofano, Luciano, Ceccarelli, Michele, Di Lullo, Luca, Capolongo, Giovanna, Di Iorio, Mattia, Guastaferro, Pasquale, Capasso, Giovambattista

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RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes by Mall, Raghvendra, Cerulo, Luigi, Garofano, Luciano, Frattini, Veronique, Kunji, Khalid, Bensmail, Halima, Sabedot, Thais S, Noushmehr, Houtan, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele

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EPCO-27. REVEALING TUMOR HETEROGENEITY AND IMMUNE MICROENVIRONMENT IN NF-1 GLIOMA BY SINGLE-CELL GENE EXPRESSION PROFILING by D'Angelo, Fulvio, Garofano, Luciano, Oh, Young Taek, Najac, Ryan, Ceccarelli, Michele, Eoli, Marica, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EXTH-21. DEVELOPMENT OF THERAPEUTIC STRATEGIES BY PATHWAY-BASED MULTI-OMICS APPROACH AND MASTER KINASE ANALYSIS IN GLIOBLASTOMA MULTIFORME by Oh, Michael, Hasanain, Mohammad, Migliozzi, Simona, Garofano, Luciano, D'Angelo, Fulvio, Stefano, Anna Luisa Di, Lerond, Julie, Sarkaria, Jann, Ceccarelli, Michele, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EPCO-03. PATHWAY-BASED STRATIFICATION OF GLIOBLASTOMA BY MULTI-OMICS INFORMS SUBTYPE-SPECIFIC MASTER KINASES-PHOSPHOSITE SUBSTRATES by Migliozzi, Simona, Oh, Young Taek, Hasanain, Mohammad, Garofano, Luciano, D'Angelo, Fulvio, Picca, Alberto, Bielle, Franck, Sarkaria, Jann, Ceccarelli, Michele, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EPCO-27. RECONSTRUCTION OF THE SPATIAL ECOSYSTEM OF GLIOBLASTOMA REVEALS RECURRENT RELATIONSHIPS BETWEEN TUMOR CELL STATES AND TUMOR MICROENVIRONMENT by Adabbo, Bruno, Migliozzi, Simona, Garofano, Luciano, Oh, Young Taek, Gultekin, Sakir H, D'Angelo, Fulvio, Roberts, Evan R, Bilbao, Daniel C, Davila, Pedro M, Williams, Sion L, Currall, Benjamin B, Ceccarelli, Michele, Lasorella, Anna, Iavarone, Antonio

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Abstract 2169: Tumor-myeloid cell interactions are dynamic and influence the evolutionary trajectory of adult diffuse glioma by Varn, Frederick S., Johnson, Kevin C., Barthel, Floris P., Kim, Hoon, Wade, Taylor, Lodha, Disha, Ajaib, Shoaib, Ahmed, Nazia, Garofano, Luciano, D'Angelo, Fulvio, Stead, Lucy, Noushmehr, Houtan, Iavarone, Antonio, Verhaak, Roel

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Bloodstain pattern analysis as optimisation problem by Vitiello, Autilia, Di Nunzio, Ciro, Garofano, Luciano, Saliva, Maurizio, Ricci, Pietrantonio, Acampora, Giovanni

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