RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts by Graubert, Aaron, Aguet, François, Ravi, Arvind, Ardlie, Kristin G, Getz, Gad

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pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens by Hundal, Jasreet, Kiwala, Susanna, McMichael, Joshua, Miller, Christopher A, Xia, Huiming, Wollam, Alexander T, Liu, Connor J, Zhao, Sidi, Feng, Yang-Yang, Graubert, Aaron P, Wollam, Amber Z, Neichin, Jonas, Neveau, Megan, Walker, Jason, Gillanders, William E, Mardis, Elaine R, Griffith, Obi L, Griffith, Malachi

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The GTEx Consortium atlas of genetic regulatory effects across human tissues by Aguet, François, Anand, Shankara, Ardlie, Kristin G., Gabriel, Stacey, Getz, Gad A., Graubert, Aaron, Hadley, Kane, Handsaker, Robert E., Huang, Katherine H., Kashin, Seva, Li, Xiao, MacArthur, Daniel G., Meier, Samuel R., Nedzel, Jared L., Nguyen, Duyen T., Segrè, Ayellet V., Todres, Ellen, Balliu, Brunilda, Barbeira, Alvaro N., Battle, Alexis, Bonazzola, Rodrigo, Brown, Andrew, Brown, Christopher D., Castel, Stephane E., Conrad, Donald F., Cotter, Daniel J., Cox, Nancy, Das, Sayantan, de Goede, Olivia M., Dermitzakis, Emmanouil T., Einson, Jonah, Engelhardt, Barbara E., Eskin, Eleazar, Eulalio, Tiffany Y., Ferraro, Nicole M., Flynn, Elise D., Fresard, Laure, Gamazon, Eric R., Garrido-Martín, Diego, Gay, Nicole R., Gloudemans, Michael J., Guigó, Roderic, Hame, Andrew R., He, Yuan, Hoffman, Paul J., Hormozdiari, Farhad, Hou, Lei, Im, Hae Kyung, Jo, Brian, Kasela, Silva, Kellis, Manolis, Kim-Hellmuth, Sarah, Kwong, Alan, Lappalainen, Tuuli, Li, Xin, Liang, Yanyu, Mangul, Serghei, Mohammadi, Pejman, Montgomery, Stephen B., Muñoz-Aguirre, Manuel, Nachun, Daniel C., Nobel, Andrew B., Oliva, Meritxell, Park, YoSon, Park, Yongjin, Parsana, Princy, Rao, Abhiram S., Reverter, Ferran, Rouhana, John M., Sabatti, Chiara, Saha, Ashis, Stephens, Matthew, Stranger, Barbara E., Strober, Benjamin J., Teran, Nicole A., Viñuela, Ana, Wang, Gao, Wen, Xiaoquan, Wright, Fred, Wucher, Valentin, Zou, Yuxin, Ferreira, Pedro G., Li, Gen, Melé, Marta, Yeger-Lotem, Esti, Barcus, Mary E., Bradbury, Debra, Krubit, Tanya, McLean, Jeffrey A., Qi, Liqun, Robinson, Karna, Roche, Nancy V., Smith, Anna M., Sobin, Leslie, Tabor, David E., Undale, Anita, Bridge, Jason, Brigham, Lori E., Foster, Barbara A., Gillard, Bryan M.

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The impact of sex on gene expression across human tissues by Oliva, Meritxell, Muñoz-Aguirre, Manuel, Kim-Hellmuth, Sarah, Wucher, Valentin, Gewirtz, Ariel D H, Cotter, Daniel J, Parsana, Princy, Kasela, Silva, Balliu, Brunilda, Viñuela, Ana, Castel, Stephane E, Mohammadi, Pejman, Aguet, François, Zou, Yuxin, Khramtsova, Ekaterina A, Skol, Andrew D, Garrido-Martín, Diego, Reverter, Ferran, Brown, Andrew, Evans, Patrick, Gamazon, Eric R, Payne, Anthony, Bonazzola, Rodrigo, Barbeira, Alvaro N, Hamel, Andrew R, Martinez-Perez, Angel, Soria, José Manuel, Pierce, Brandon L, Stephens, Matthew, Eskin, Eleazar, Dermitzakis, Emmanouil T, Segrè, Ayellet V, Im, Hae Kyung, Engelhardt, Barbara E, Ardlie, Kristin G, Montgomery, Stephen B, Battle, Alexis J, Lappalainen, Tuuli, Guigó, Roderic, Stranger, Barbara E

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A Quantitative Proteome Map of the Human Body by Jiang, Lihua, Chan, Joanne, Fang, Huaying, Anand, Shankara, Gabriel, Stacey, Graubert, Aaron, Hadley, Kane, Huang, Katherine H., MacArthur, Daniel G., Meier, Samuel R., Segrè, Ayellet V., Balliu, Brunilda, Barbeira, Alvaro N., Battle, Alexis, Brown, Andrew, Brown, Christopher D., Castel, Stephane E., Conrad, Don, Cotter, Daniel J., Das, Sayantan, de Goede, Olivia M., Dermitzakis, Emmanouil T., Eskin, Eleazar, Eulalio, Tiffany Y., Garrido-Martín, Diego, Guigó, Roderic, He, Yuan, Hoffman, Paul J., Hormozdiari, Farhad, Im, Hae Kyung, Jo, Brian, Kasela, Silva, Kellis, Manolis, Kim-Hellmuth, Sarah, Li, Xin, Mohammadi, Pejman, Montgomery, Stephen B., Muñoz-Aguirre, Manuel, Nachun, Daniel C., Oliva, Meritxell, Parsana, Princy, Sabatti, Chiara, Skol, Andrew D., Stephens, Matthew, Strober, Benjamin J., Teran, Nicole A., Viñuela, Ana, Wang, Gao, Wucher, Valentin, Zou, Yuxin, Ferreira, Pedro G., Yeger-Lotem, Esti, Barcus, Mary E., Bradbury, Debra, Krubit, Tanya, McLean, Jeffrey A., Smith, Anna M., Sobin, Leslie, Tabor, David E., Brigham, Lori E., Gillard, Bryan M., Hasz, Richard, Johnson, Mark, Kopen, Gene, Moser, Michael T., Myer, Kevin, Shad, Saboor, Thomas, Jeffrey A., Washington, Michael, Rohrer, Daniel C., Valley, Dana R., Davis, David A., Mash, Deborah C., Mosavel, Maghboeba, Siminoff, Laura A., Flicek, Paul, Juettemann, Thomas, Powell, Conner C., Rosenbloom, Kate R., Ruffier, Magali, Sheppard, Dan, Taylor, Kieron, Akey, Joshua, Demanelis, Kathryn, Feinberg, Andrew P., Hansen, Kasper D., Kibriya, Muhammad G., Li, Jin Billy, Li, Qin, Linder, Sandra E., Pierce, Brandon L., Smith, Kevin S., Tang, Hua, Carithers, Latarsha J., Koester, Susan E., Little, A. Roger, Moore, Helen M., Rao, Abhi K., Vaught, Jimmie B., Volpi, Simona

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Determinants of telomere length across human tissues by Demanelis, Kathryn, Jasmine, Farzana, Chen, Lin S, Chernoff, Meytal, Tong, Lin, Delgado, Dayana, Zhang, Chenan, Shinkle, Justin, Sabarinathan, Mekala, Lin, Hannah, Ramirez, Eduardo, Oliva, Meritxell, Kim-Hellmuth, Sarah, Stranger, Barbara E, Lai, Tsung-Po, Aviv, Abraham, Ardlie, Kristin G, Aguet, François, Ahsan, Habibul, Doherty, Jennifer A, Kibriya, Muhammad G, Pierce, Brandon L

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Cell type-specific genetic regulation of gene expression across human tissues by Kim-Hellmuth, Sarah, Aguet, François, Oliva, Meritxell, Muñoz-Aguirre, Manuel, Kasela, Silva, Wucher, Valentin, Castel, Stephane E, Hamel, Andrew R, Viñuela, Ana, Roberts, Amy L, Mangul, Serghei, Wen, Xiaoquan, Wang, Gao, Barbeira, Alvaro N, Garrido-Martín, Diego, Nadel, Brian B, Zou, Yuxin, Bonazzola, Rodrigo, Quan, Jie, Brown, Andrew, Martinez-Perez, Angel, Soria, José Manuel, Getz, Gad, Dermitzakis, Emmanouil T, Small, Kerrin S, Stephens, Matthew, Xi, Hualin S, Im, Hae Kyung, Guigó, Roderic, Segrè, Ayellet V, Stranger, Barbara E, Ardlie, Kristin G, Lappalainen, Tuuli

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Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease by Gloudemans, Michael J., Smail, Craig, Eulalio, Tiffany Y., Aguet, François, Xu, Jishu, Kim-Hellmuth, Sarah, Park, YoSon, Scott, Alexandra J., Strober, Benjamin J., Gabriel, Stacey, Meier, Samuel R., Nguyen, Duyen T., Segrè, Ayellet V., Brown, Andrew, Cotter, Daniel J., Cox, Nancy, Dermitzakis, Emmanouil T., Einson, Jonah, Flynn, Elise D., Fresard, Laure, Gamazon, Eric R., Gay, Nicole R., Guigó, Roderic, Hamel, Andrew R., He, Yuan, Hoffman, Paul J., Hormozdiari, Farhad, Hou, Lei, Jo, Brian, Kashin, Seva, Mohammadi, Pejman, Oliva, Meritxell, Parsana, Princy, Sabatti, Chiara, Stranger, Barbara E., Teran, Nicole A., Viñuela, Ana, Wang, Gao, Wright, Fred, Ferreira, Pedro G., Li, Gen, Yeger-Lotem, Esti, Bradbury, Debra, Qi, Liqun, Robinson, Karna, Roche, Nancy V., Tabor, David E., Bridge, Jason, Gillard, Bryan M., Hasz, Richard, Hunter, Marcus, Kopen, Gene, Leinweber, William F., Moser, Michael T., Myer, Kevin, Washington, Michael, Wheeler, Joseph, Rohrer, Daniel C., Valley, Dana R., Branton, Philip A., Sobin, Leslie, Gardiner, Heather M., Mosavel, Maghboeba, Siminoff, Laura A., Flicek, Paul, Haeussler, Maximilian, Juettemann, Thomas, Ruffier, Magali, Sheppard, Dan, Taylor, Kieron, Abell, Nathan S., Akey, Joshua, Chen, Lin, Feinberg, Andrew P., Hansen, Kasper D., Jasmine, Farzana, Jiang, Lihua, Kaul, Rajinder, Kibriya, Muhammad G., Li, Jin Billy, Li, Qin, Lin, Shin, Pierce, Brandon L., Skol, Andrew D., Smith, Kevin S., Snyder, Michael, Stamatoyannopoulos, John, Tang, Hua, Guan, Ping, Little, A. Roger, Nierras, Concepcion R., Rao, Abhi K., Volpi, Simona, Brown, Christopher D., Wen, Xiaoquan, Hall, Ira M., Lappalainen, Tuuli, Im, Hae Kyung, Quertermous, Thomas, Kirkegaard, Karla

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Transcriptomic signatures across human tissues identify functional rare genetic variation by Ferraro, Nicole M, Strober, Benjamin J, Einson, Jonah, Abell, Nathan S, Aguet, Francois, Barbeira, Alvaro N, Brandt, Margot, Bucan, Maja, Castel, Stephane E, Davis, Joe R, Greenwald, Emily, Hess, Gaelen T, Hilliard, Austin T, Kember, Rachel L, Kotis, Bence, Park, YoSon, Peloso, Gina, Ramdas, Shweta, Scott, Alexandra J, Smail, Craig, Tsang, Emily K, Zekavat, Seyedeh M, Ziosi, Marcello, Aradhana, Ardlie, Kristin G, Assimes, Themistocles L, Bassik, Michael C, Brown, Christopher D, Correa, Adolfo, Hall, Ira, Im, Hae Kyung, Li, Xin, Natarajan, Pradeep, Lappalainen, Tuuli, Mohammadi, Pejman, Montgomery, Stephen B, Battle, Alexis

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A vast resource of allelic expression data spanning human tissues by Castel, Stephane E, Aguet, François, Mohammadi, Pejman, Ardlie, Kristin G, Lappalainen, Tuuli

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Impact of Ultra Rapid Molecular Profiling on Treatment Delays and Healthcare Utilization of Patients Hospitalized for Acute Leukemia by Dhawale, Tejaswini, Nardi, Valentina, Wang, Charlotte, Bard, Adam, Essigmann, Natalia, Leonard, Daniel, Graubert, Timothy Aaron, Fathi, Amir T.

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Safety and Activity of the TIM3 Inhibitor Sabatolimab in Patients with Lower-Risk Myelodysplastic Syndromes by Brunner, Andrew M., Liu, Yiwen, Narayan, Rupa, Lee, Michelle Hyunju, Amrein, Philip C., Hock, Hanno, Hobbs, Gabriela S., Neuberg, Donna S., Graubert, Timothy Aaron, Fathi, Amir T.

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TRK Protein Expression in TP53 Altered Acute Erythroid Leukemia by Narayan, Rupa, Swords, Ronan T., Amrein, Philip C., Brunner, Andrew M., Hobbs, Gabriela S., Hock, Hanno, Lee, Michelle Hyunju, Graubert, Timothy Aaron, Fathi, Amir T., Hasserjian, Robert P, Nardi, Valentina

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Retrospective Single-Institution Review of Bosutinib Dose Optimization for Efficacy and Safety with Dose Ramp-up and Titration by Freydman, Jessica, Sirignano, David, Amrein, Philip C., Bergeron, Meghan, Brunner, Andrew M., Foster, Elsie, Fathi, Amir T., Graubert, Timothy Aaron, Hock, Hanno, Lee, Michelle Hyunju, Moran, Jenna, Narayan, Rupa, Hobbs, Gabriela S.

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Clinical Activity and Safety of the Oral ATR Inhibitor Ceralasertib (AZD6738) in Patients with MDS or CMML after Prior HMA Therapy by Brunner, Andrew M., Liu, Yiwen, Garcia, Jacqueline S., Mendez, Lourdes, Gutierrez, Catherine, Amrein, Philip C., Narayan, Rupa, Vedula, Rahul, Neuberg, Donna S., Andrade-Campos, Marcio, Smith, Simon, Stone, Richard M, Fathi, Amir T., Walter, Matthew J., Graubert, Timothy Aaron, Jacoby, Meagan

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Single-Cell Multiomics Analysis Reveals Potential Drivers of Response to the Anti-TIM3 Inhibitor Sabatolimab Combined with Azacitidine in MDS and CMML by Dey, Aonkon, Narayan, Rupa, Smith, Neal, Tirard, Alice, Arnold, Benjamin, McGuire, John, Chan, Thomas, Lombardi Story, Jennifer, Casson, Timothy, Behnan, Tanya Toni, Fathi, Amir T., Hobbs, Gabriela S., Hock, Hanno, Amrein, Philip C., Reeves, Patrick, Graubert, Timothy Aaron, Brunner, Andrew M., Villani, Alexandra-Chloé

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pVACtools: a computational toolkit to identify and visualize cancer neoantigens: pVACtools: toolkit for tumor neoantigen characterization by Hundal, Jasreet, Kiwala, Susanna, McMichael, Joshua, Miller, Christopher A., Xia, Huiming, Wollam, Alexander T., Liu, Connor J., Zhao, Sidi, Feng, Yang-Yang, Graubert, Aaron P., Wollam, Amber Z., Neichin, Jonas, Neveau, Megan, Walker, Jason, Gillanders, William E, Mardis, Elaine R., Griffith, Obi L., Griffith, Malachi

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26. pVACtools: Computational selection and visualization of neoantigens for personalized cancer vaccine design by Kiwala, Susanna, Hundal, Jasreet, McMichael, Joshua, Feng, Yang-Yang, Miller, Christopher A., Graubert, Aaron, Wollam, Amber, Liu, Connor, Neichin, Jonas, Neveau, Megan, Walker, Jason, Mardis, Elaine R., Griffith, Obi L., Griffith, Malachi

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A Molecular-Based Ecosystem to Improve Personalized Medicine in Patients with Chronic Myelomonocytic Leukemia (CMML) by Lanino, Luca, Hunter, Anthony M., Gagelmann, Nico, Robin, Marie, Sala, Claudia, Dall'Olio, Daniele, Gurnari, Carmelo, Dall'Olio, Lorenzo, Wang, Yu-Hung, Pleyer, Lisa, Xicoy, Blanca, Montalban-Bravo, Guillermo, Shih, Lee-Yung, Haque, Tamanna, Abdel-Wahab, Omar, Geissler, Klaus, Bataller, Alex, Bazinet, Alexandre, Meggendorfer, Manja, Casetti, Ilaria Carola, Sauta, Elisabetta, Travaglino, Erica, Palomo, Laura, Zamora, Lurdes, Quintela, David, Jerez, Andres, Cornejo, Elena, Díaz-Beyá, Marina, Avendaño Pita, Alejandro, Fiallo Suarez, Dolly Viviana, Cerezo Velasco, Estefania, Calabuig, Marisa, Such, Esperanza, Sanz, Guillermo, Kubasch, Anne Sophie, Castilla-Llorente, Cristina, Bulabois, Claude-Éric, Souchet, Laetitia, Awada, Hussein, Bernardi, Massimo, Chiusolo, Patrizia, Giaccone, Luisa, Onida, Francesco, Borin, Lorenza Maria, Passamonti, Francesco, Diral, Elisa, Vucinic, Vladan, Bergonzi, Gregorio Maria, Voso, Maria Teresa, Hou, Hsin-An, Chou, Wen-Chien, Yao, Chi-Yuan, Lin, Chien-Chin, Tien, Hwei-Fang, Ubezio, Marta, Russo, Antonio, Maggioni, Giulia, Tentori, Cristina Astrid, Buizza, Alessandro, Asti, Gianluca, Zampini, Matteo, Riva, Elena, Consagra, Angela, Ficara, Francesca, Santoro, Armando, Carota, Luciana, Sanavia, Tiziana, Rollo, Cesare, Kiwan, Ahmad, VanOudenhove, Jennifer, Fariselli, Piero, Al Ali, Najla H., Sallman, David, Kern, Wolfgang, Garcia-Manero, Guillermo, Thota, Swapna, Griffiths, Elizabeth A., Follo, Matilde Yung, Finelli, Carlo, Platzbecker, Uwe, Sole, Francesc, Diez-Campelo, Maria, Maciejewski, Jaroslaw, Bejar, Rafael, Thol, Felicitas R., Fenaux, Pierre, Itzykson, Raphael, Graubert, Timothy Aaron, Fontenay, Michaela, Zeidan, Amer M., Komrokji, Rami S., Santini, Valeria, Haferlach, Torsten, Germing, Ulrich, D'Amico, Saverio, Castellani, Gastone, Patnaik, Mrinal M., Solary, Eric, Padron, Eric, Della Porta, Matteo Giovanni

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Ultra-Deep Sequencing As a Predictive Tool for MDS Progression after Allogeneic Hematopoietic Cell Transplant by Duncavage, Eric J., Jacoby, Meagan, Chang, Gue Su, Miller, Christopher A, Edwin, Natasha, Uy, Geoffrey L., Robinson, Joshua, Abel, Haley J, Shao, Jin, Elliot, Kevin, Fulton, Robert, Fronick, Catrina, O'Laughlin, Michelle, DiPersio, John F, Ley, Timothy J, Trinkaus, Kathryn, Graubert, Timothy Aaron, Walter, Matthew J.

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