Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks by Sanaullah, Ahmed, Yang, Chen, Alexeev, Yuri, Yoshii, Kazutomo, Herbordt, Martin C

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NCBI BLASTP on High-Performance Reconfigurable Computing Systems by Mahram, Atabak, Herbordt, Martin C.

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Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations by Gu, Yongfeng, VanCourt, Tom, Herbordt, Martin C.

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Reconfigurable switches for high performance and flexible MPI collectives by Haghi, Pouya, Guo, Anqi, Xiong, Qingqing, Yang, Chen, Geng, Tong, Broaddus, Justin T., Marshall, Ryan, Schafer, Derek, Skjellum, Anthony, Herbordt, Martin C.

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Families of FPGA-based accelerators for approximate string matching by Van Court, Tom, Herbordt, Martin C.

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Achieving High Performance with FPGA-Based Computing by Herbordt, Martin C., VanCourt, Tom, Gu, Yongfeng, Sukhwani, Bharat, Conti, Al, Model, Josh, DiSabello, Doug

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Molecular Dynamics Simulations on High-Performance Reconfigurable Computing Systems by Chiu, Matt, Herbordt, Martin C

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Parallel discrete molecular dynamics simulation with speculation and in-order commitment by Khan, Md. Ashfaquzzaman, Herbordt, Martin C.

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Single pass streaming BLAST on FPGAs by Herbordt, Martin C., Model, Josh, Sukhwani, Bharat, Gu, Yongfeng, VanCourt, Tom

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Computing Models for FPGA-Based Accelerators by Herbordt, Martin C., Gu, Yongfeng, VanCourt, Tom, Model, Josh, Sukhwani, Bharat, Chiu, Matt

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Accelerating MPI Message Matching through FPGA Offload by Xiong, Qingqing, Skjellum, Anthony, Herbordt, Martin C.

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High Performance Communication on Reconfigurable Clusters by Sheng, Jiayi, Yang, Chen, Herbordt, Martin C.

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Architecture/algorithm codesign of molecular dynamics processors by Herbordt, Martin C.

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Array control for high-performance SIMD systems by Herbordt, Martin C., Cravy, Jade, Zhang, Honghai

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Case study of a functional genomics application for an FPGA-based coprocessor by Van Court, Tom, Herbordt, Martin C., Barton, Richard J.

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Using emulations to enhance the performance of parallel architectures by Obrenic, B., Herbordt, M.C., Rosenberg, A.L., Weems, C.C.

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Towards production FPGA-accelerated molecular dynamics: Progress and challenges by Chiu, Matt, Herbordt, Martin C

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Fast binding site mapping using GPUs and CUDA by Sukhwani, Bharat, Herbordt, Martin C

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FPGA-Based Multigrid Computation for Molecular Dynamics Simulations by Yongfeng Gu, Herbordt, M.C.

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GhostSZ: A Transparent FPGA-Accelerated Lossy Compression Framework by Xiong, Qingqing, Patel, Rushi, Yang, Chen, Geng, Tong, Skjellum, Anthony, Herbordt, Martin C.

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