A kinetic and thermodynamic framework for the Azoarcus group I ribozyme reaction by Gleitsman, Kristin R, Herschlag, Daniel H

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states by Wilkinson, Kevin A, Gorelick, Robert J, Vasa, Suzy M, Guex, Nicolas, Rein, Alan, Mathews, David H, Giddings, Morgan C, Weeks, Kevin M

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Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements by Shin, John H, Bonilla, Steve L, Denny, Sarah K, Greenleaf, William J, Herschlag, Daniel

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A Single-Molecule Study of RNA Catalysis and Folding by Zhuang, Xiaowei, Bartley, Laura E., Babcock, Hazen P., Russell, Rick, Ha, Taekjip, Herschlag, Daniel, Chu, Steven

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High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs by Bonilla, Steve L., Denny, Sarah K., Shin, John H., Alvarez-Buylla, Aurora, Greenleaf, William J., Herschlag, Daniel

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The Paradoxical Behavior of a Highly Structured Misfolded Intermediate in RNA Folding by Russell, Rick, Das, Rhiju, Suh, Hyejean, Travers, Kevin J., Laederach, Alain, Engelhardt, Mark A., Herschlag, Daniel

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Exploring the Folding Landscape of a Structured RNA by Russell, Rick, Zhuang, Xiaowei, Babcock, Hazen P., Millett, Ian S., Doniach, Sebastian, Chu, Steven, Herschlag, Daniel

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Structural Specificity Conferred by a Group I RNA Peripheral Element by Johnson, Travis H., Tijerina, Pilar, Chadee, Amanda B., Herschlag, Daniel, Russell, Rick, Doudna, Jennifer A.

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Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data by Greenfeld, Max, van de Meent, Jan-Willem, Pavlichin, Dmitri S, Mabuchi, Hideo, Wiggins, Chris H, Gonzalez, Jr, Ruben L, Herschlag, Daniel

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RNA Structure, Function, and (Thermo-) Dynamics: A SAXS and Single-Molecule Perspective by Lipfert, Jan, Herschlag, Daniel, Doniach, Sebastian, Dekker, Nynke H.

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Tightening of Active Site Interactions En Route to the Transition State Revealed by Single-Atom Substitution in the Guanosine-Binding Site of the Tetrahymena Group I Ribozyme by Forconi, Marcello, Porecha, Rishi H, Piccirilli, Joseph A, Herschlag, Daniel

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Environmental Effects on Phosphoryl Group Bonding Probed by Vibrational Spectroscopy:  Implications for Understanding Phosphoryl Transfer and Enzymatic Catalysis by Cheng, Hu, Nikolic-Hughes, Ivana, Wang, Jianghua H, Deng, Hua, O'Brien, Patrick J, Wu, Li, Zhang, Zhong-Yin, Herschlag, Daniel, Callender, Robert

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A base triple in the Tetrahymena group I core affects the reaction equilibrium via a threshold effect by Karbstein, Katrin, Tang, Kuo-Hsiang, Herschlag, Daniel

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