Whole genome sequencing analysis for cancer genomics and precision medicine by Nakagawa, Hidewaki, Fujita, Masashi

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Genetic and epigenetic basis of hepatoblastoma diversity by Nagae, Genta, Yamamoto, Shogo, Fujita, Masashi, Fujita, Takanori, Nonaka, Aya, Umeda, Takayoshi, Fukuda, Shiro, Tatsuno, Kenji, Maejima, Kazuhiro, Hayashi, Akimasa, Kurihara, Sho, Kojima, Masato, Hishiki, Tomoro, Watanabe, Kenichiro, Ida, Kohmei, Yano, Michihiro, Hiyama, Yoko, Tanaka, Yukichi, Inoue, Takeshi, Ueda, Hiroki, Nakagawa, Hidewaki, Aburatani, Hiroyuki, Hiyama, Eiso

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The repertoire of mutational signatures in human cancer by Alexandrov, Ludmil B., Kim, Jaegil, Haradhvala, Nicholas J., Huang, Mi Ni, Tian Ng, Alvin Wei, Wu, Yang, Boot, Arnoud, Covington, Kyle R., Gordenin, Dmitry A., Bergstrom, Erik N., Islam, S. M. Ashiqul, Lopez-Bigas, Nuria, Klimczak, Leszek J., McPherson, John R., Morganella, Sandro, Sabarinathan, Radhakrishnan, Wheeler, David A., Mustonen, Ville, Getz, Gad, Rozen, Steven G., Stratton, Michael R.

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Antibody-coupled monolithic silica microtips for highthroughput molecular profiling of circulating exosomes by Ueda, Koji, Ishikawa, Nobuhisa, Tatsuguchi, Ayako, Saichi, Naomi, Fujii, Risa, Nakagawa, Hidewaki

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Patterns of somatic structural variation in human cancer genomes by Li, Yilong, Roberts, Nicola D., Wala, Jeremiah A., Shapira, Ofer, Schumacher, Steven E., Kumar, Kiran, Khurana, Ekta, Waszak, Sebastian, Korbel, Jan O., Haber, James E., Imielinski, Marcin, Weischenfeldt, Joachim, Beroukhim, Rameen, Campbell, Peter J.

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Genomic and Transcriptomic Profiling of Combined Hepatocellular and Intrahepatic Cholangiocarcinoma Reveals Distinct Molecular Subtypes by Xue, Ruidong, Chen, Lu, Zhang, Chong, Fujita, Masashi, Li, Ruoyan, Yan, Shu-Mei, Ong, Choon Kiat, Liao, Xiwen, Gao, Qiang, Sasagawa, Shota, Li, Yanmeng, Wang, Jincheng, Guo, Hua, Huang, Qi-Tao, Zhong, Qian, Tan, Jing, Qi, Lisha, Gong, Wenchen, Hong, Zhixian, Li, Meng, Zhao, Jingmin, Peng, Tao, Lu, Yinying, Lim, Kiat Hon Tony, Boot, Arnoud, Ono, Atushi, Chayama, Kazuaki, Zhang, Zemin, Rozen, Steve George, Teh, Bin Tean, Wang, Xin Wei, Nakagawa, Hidewaki, Zeng, Mu-Sheng, Bai, Fan, Zhang, Ning

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Genomic characterization of biliary tract cancers identifies driver genes and predisposing mutations by Wardell, Christopher P., Fujita, Masashi, Yamada, Toru, Simbolo, Michele, Fassan, Matteo, Karlic, Rosa, Polak, Paz, Kim, Jaegil, Hatanaka, Yutaka, Maejima, Kazuhiro, Lawlor, Rita T., Nakanishi, Yoshitsugu, Mitsuhashi, Tomoko, Fujimoto, Akihiro, Furuta, Mayuko, Ruzzenente, Andrea, Conci, Simone, Oosawa, Ayako, Sasaki-Oku, Aya, Nakano, Kaoru, Tanaka, Hiroko, Yamamoto, Yujiro, Michiaki, Kubo, Kawakami, Yoshiiku, Aikata, Hiroshi, Ueno, Masaki, Hayami, Shinya, Gotoh, Kunihito, Ariizumi, Shun-ichi, Yamamoto, Masakazu, Yamaue, Hiroki, Chayama, Kazuaki, Miyano, Satoru, Getz, Gad, Scarpa, Aldo, Hirano, Satoshi, Nakamura, Toru, Nakagawa, Hidewaki

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A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns by Jiao, Wei, Atwal, Gurnit, Polak, Paz, Karlic, Rosa, Cuppen, Edwin, Danyi, Alexandra, de Ridder, Jeroen, van Herpen, Carla, Lolkema, Martijn P., Steeghs, Neeltje, Getz, Gad, Morris, Quaid D., Stein, Lincoln D.

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Integrated exome and RNA sequencing of dedifferentiated liposarcoma by Hirata, Makoto, Asano, Naofumi, Katayama, Kotoe, Yoshida, Akihiko, Tsuda, Yusuke, Sekimizu, Masaya, Mitani, Sachiyo, Kobayashi, Eisuke, Komiyama, Motokiyo, Fujimoto, Hiroyuki, Goto, Takahiro, Iwamoto, Yukihide, Naka, Norifumi, Iwata, Shintaro, Nishida, Yoshihiro, Hiruma, Toru, Hiraga, Hiroaki, Kawano, Hirotaka, Motoi, Toru, Oda, Yoshinao, Matsubara, Daisuke, Fujita, Masashi, Shibata, Tatsuhiro, Nakagawa, Hidewaki, Nakayama, Robert, Kondo, Tadashi, Imoto, Seiya, Miyano, Satoru, Kawai, Akira, Yamaguchi, Rui, Ichikawa, Hitoshi, Matsuda, Koichi

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Clinical significance of the mutational landscape and fragmentation of circulating tumor DNA in renal cell carcinoma by Yamamoto, Yoshiyuki, Uemura, Motohide, Fujita, Masashi, Maejima, Kazuhiro, Koh, Yoko, Matsushita, Makoto, Nakano, Kosuke, Hayashi, Yujiro, Wang, Cong, Ishizuya, Yu, Kinouchi, Toshiro, Hayashi, Takuji, Matsuzaki, Kyosuke, Jingushi, Kentaro, Kato, Taigo, Kawashima, Atsunari, Ujike, Takeshi, Nagahara, Akira, Fujita, Kazutoshi, Imamura, Ryoichi, Nakagawa, Hidewaki, Nonomura, Norio

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Aberrant integration of Hepatitis B virus DNA promotes major restructuring of human hepatocellular carcinoma genome architecture by Álvarez, Eva G., Demeulemeester, Jonas, Otero, Paula, Jolly, Clemency, García-Souto, Daniel, Pequeño-Valtierra, Ana, Zamora, Jorge, Tojo, Marta, Temes, Javier, Baez-Ortega, Adrian, Rodriguez-Martin, Bernardo, Oitaben, Ana, Bruzos, Alicia L., Martínez-Fernández, Mónica, Haase, Kerstin, Zumalave, Sonia, Abal, Rosanna, Rodríguez-Castro, Jorge, Rodriguez-Casanova, Aitor, Diaz-Lagares, Angel, Li, Yilong, Raine, Keiran M., Butler, Adam P., Otero, Iago, Ono, Atsushi, Aikata, Hiroshi, Chayama, Kazuaki, Ueno, Masaki, Hayami, Shinya, Yamaue, Hiroki, Maejima, Kazuhiro, Blanco, Miguel G., Forns, Xavier, Rivas, Carmen, Ruiz-Bañobre, Juan, Pérez-del-Pulgar, Sofía, Torres-Ruiz, Raúl, Rodriguez-Perales, Sandra, Garaigorta, Urtzi, Campbell, Peter J., Nakagawa, Hidewaki, Van Loo, Peter, Tubio, Jose M. C.

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Association of a novel long non‐coding RNA in 8q24 with prostate cancer susceptibility by Chung, Suyoun, Nakagawa, Hidewaki, Uemura, Motohide, Piao, Lianhua, Ashikawa, Kyota, Hosono, Naoya, Takata, Ryo, Akamatsu, Shusuke, Kawaguchi, Takahisa, Morizono, Takashi, Tsunoda, Tatsuhiko, Daigo, Yataro, Matsuda, Koichi, Kamatani, Naoyuki, Nakamura, Yusuke, Kubo, Michiaki

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Integrative pathway enrichment analysis of multivariate omics data by Paczkowska, Marta, Barenboim, Jonathan, Sintupisut, Nardnisa, Fox, Natalie S., Zhu, Helen, Abd-Rabbo, Diala, Mee, Miles W., Boutros, Paul C., Reimand, Jüri

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In-depth characterization of the cisplatin mutational signature in human cell lines and in esophageal and liver tumors by Boot, Arnoud, Huang, Mi Ni, Ng, Alvin W T, Ho, Szu-Chi, Lim, Jing Quan, Kawakami, Yoshiiku, Chayama, Kazuaki, Teh, Bin Tean, Nakagawa, Hidewaki, Rozen, Steven G

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Immunotherapies targeting neoantigens are effective in PD‐1 blockade‐resistant tumors by Sun, Changbo, Nagaoka, Koji, Kobayashi, Yukari, Maejima, Kazuhiro, Nakagawa, Hidewaki, Nakajima, Jun, Kakimi, Kazuhiro

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Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types by Fujimoto, Akihiro, Fujita, Masashi, Hasegawa, Takanori, Wong, Jing Hao, Maejima, Kazuhiro, Oku-Sasaki, Aya, Nakano, Kaoru, Shiraishi, Yuichi, Miyano, Satoru, Yamamoto, Go, Akagi, Kiwamu, Imoto, Seiya, Nakagawa, Hidewaki

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A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing by Alioto, Tyler S., Buchhalter, Ivo, Derdak, Sophia, Hutter, Barbara, Eldridge, Matthew D., Hovig, Eivind, Heisler, Lawrence E., Beck, Timothy A., Simpson, Jared T., Tonon, Laurie, Sertier, Anne-Sophie, Patch, Ann-Marie, Jäger, Natalie, Ginsbach, Philip, Drews, Ruben, Paramasivam, Nagarajan, Kabbe, Rolf, Chotewutmontri, Sasithorn, Diessl, Nicolle, Previti, Christopher, Schmidt, Sabine, Brors, Benedikt, Feuerbach, Lars, Heinold, Michael, Gröbner, Susanne, Korshunov, Andrey, Tarpey, Patrick S., Butler, Adam P., Hinton, Jonathan, Jones, David, Menzies, Andrew, Raine, Keiran, Shepherd, Rebecca, Stebbings, Lucy, Teague, Jon W., Ribeca, Paolo, Giner, Francesc Castro, Beltran, Sergi, Raineri, Emanuele, Dabad, Marc, Heath, Simon C., Gut, Marta, Denroche, Robert E., Harding, Nicholas J., Yamaguchi, Takafumi N., Fujimoto, Akihiro, Nakagawa, Hidewaki, Quesada, Víctor, Valdés-Mas, Rafael, Nakken, Sigve, Vodák, Daniel, Bower, Lawrence, Lynch, Andrew G., Anderson, Charlotte L., Waddell, Nicola, Pearson, John V., Grimmond, Sean M., Peto, Myron, Spellman, Paul, He, Minghui, Kandoth, Cyriac, Lee, Semin, Zhang, John, Létourneau, Louis, Ma, Singer, Seth, Sahil, Torrents, David, Xi, Liu, Wheeler, David A., López-Otín, Carlos, Campo, Elías, Campbell, Peter J., Boutros, Paul C., Puente, Xose S., Gerhard, Daniela S., Pfister, Stefan M., McPherson, John D., Hudson, Thomas J., Schlesner, Matthias, Lichter, Peter, Eils, Roland, Jones, David T. W., Gut, Ivo G.

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Association between germline pathogenic variants in cancer‐predisposing genes and lymphoma risk by Usui, Yoshiaki, Iwasaki, Yusuke, Matsuo, Keitaro, Endo, Mikiko, Kamatani, Yoichiro, Hirata, Makoto, Sugano, Kokichi, Yoshida, Teruhiko, Matsuda, Koichi, Murakami, Yoshinori, Maeda, Yoshinobu, Nakagawa, Hidewaki, Momozawa, Yukihide

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Genomic footprints of activated telomere maintenance mechanisms in cancer by Sieverling, Lina, Hong, Chen, Koser, Sandra D., Ginsbach, Philip, Kleinheinz, Kortine, Hutter, Barbara, Braun, Delia M., Cortés-Ciriano, Isidro, Xi, Ruibin, Kabbe, Rolf, Park, Peter J., Eils, Roland, Schlesner, Matthias, Brors, Benedikt, Rippe, Karsten, Jones, David T. W., Feuerbach, Lars

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Pathway and network analysis of more than 2500 whole cancer genomes by Reyna, Matthew A., Haan, David, Paczkowska, Marta, Verbeke, Lieven P. C., Vazquez, Miguel, Kahraman, Abdullah, Pulido-Tamayo, Sergio, Barenboim, Jonathan, Wadi, Lina, Dhingra, Priyanka, Shrestha, Raunak, Getz, Gad, Lawrence, Michael S., Pedersen, Jakob Skou, Rubin, Mark A., Wheeler, David A., Brunak, Søren, Izarzugaza, Jose M. G., Khurana, Ekta, Marchal, Kathleen, von Mering, Christian, Sahinalp, S. Cenk, Valencia, Alfonso, Reimand, Jüri, Stuart, Joshua M., Raphael, Benjamin J.

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