dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data by Huynh-Thu, Vân Anh, Geurts, Pierre

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NIMEFI: gene regulatory network inference using multiple ensemble feature importance algorithms by Ruyssinck, Joeri, Huynh-Thu, Vân Anh, Geurts, Pierre, Dhaene, Tom, Demeester, Piet, Saeys, Yvan

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Inferring regulatory networks from expression data using tree-based methods by Huynh-Thu, Vân Anh, Irrthum, Alexandre, Wehenkel, Louis, Geurts, Pierre

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Combining tree-based and dynamical systems for the inference of gene regulatory networks by Huynh-Thu, Vân Anh, Sanguinetti, Guido

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Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference by Potier, Delphine, Davie, Kristofer, Hulselmans, Gert, Naval Sanchez, Marina, Haagen, Lotte, Huynh-Thu, Vân Anh, Koldere, Duygu, Celik, Arzu, Geurts, Pierre, Christiaens, Valerie, Aerts, Stein

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Bridging physiological and evolutionary time‐scales in a gene regulatory network by Marchand, Gwenaëlle, Huynh‐Thu, Vân Anh, Kane, Nolan C, Arribat, Sandrine, Varès, Didier, Rengel, David, Balzergue, Sandrine, Rieseberg, Loren H, Vincourt, Patrick, Geurts, Pierre, Vignes, Matthieu, Langlade, Nicolas B

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MicroRNAs profiling in murine models of acute and chronic asthma: a relationship with mRNAs targets by Garbacki, Nancy, Di Valentin, Emmanuel, Huynh-Thu, Vân Anh, Geurts, Pierre, Irrthum, Alexandre, Crahay, Céline, Arnould, Thierry, Deroanne, Christophe, Piette, Jacques, Cataldo, Didier, Colige, Alain

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Identification of a microRNA landscape targeting the PI3K/Akt signaling pathway in inflammation-induced colorectal carcinogenesis by Josse, Claire, Bouznad, Nassim, Geurts, Pierre, Irrthum, Alexandre, Huynh-Thu, Vân Anh, Servais, Laurence, Hego, Alexandre, Delvenne, Philippe, Bours, Vincent, Oury, Cécile

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Optimizing model-agnostic random subspace ensembles by Huynh-Thu, Vân Anh, Geurts, Pierre

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Statistical interpretation of machine learning-based feature importance scores for biomarker discovery by VAN ANH HUYNH-THU, SAEYS, Yvan, WEHENKEL, Louis, GEURTS, Pierre

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Serum proteome signatures associated with ileal and colonic ulcers in Crohn's disease by Pierre, Nicolas, Huynh-Thu, Vân Anh, Baiwir, Dominique, Vieujean, Sophie, Bequet, Emeline, Reenaers, Catherine, Van Kemseke, Catherine, Salée, Catherine, Massot, Charlotte, Fléron, Maximilien, Mazzucchelli, Gabriel, Trzpiot, Lisette, Eppe, Gauthier, De Pauw, Edwin, Louis, Edouard, Meuwis, Marie-Alice

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Myelin-derived lipids modulate macrophage activity by liver X receptor activation by Bogie, Jeroen F J, Timmermans, Silke, Huynh-Thu, Vân Anh, Irrthum, Alexandre, Smeets, Hubert J M, Gustafsson, Jan-Åke, Steffensen, Knut R, Mulder, Monique, Stinissen, Piet, Hellings, Niels, Hendriks, Jerome J A

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Strand‐specific, high‐resolution mapping of modified RNA polymerase II by Milligan, Laura, Huynh‐Thu, Vân A, Delan‐Forino, Clémentine, Tuck, Alex, Petfalski, Elisabeth, Lombraña, Rodrigo, Sanguinetti, Guido, Kudla, Grzegorz, Tollervey, David

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Optimizing model-agnostic Random Subspace ensembles by Huynh-Thu, Vân Anh, Geurts, Pierre

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Knowledge-Guided Additive Modeling For Supervised Regression by Claes, Yann, Huynh-Thu, Vân Anh, Geurts, Pierre

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Gene regulatory network inference: an introductory survey by Huynh-Thu, Vân Anh, Sanguinetti, Guido

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NIMEFI: Gene Regulatory Network Inference using Multiple Ensemble Feature Importance Algorithms: e92709 by Ruyssinck, Joeri, Huynh-Thu, Van Anh, Geurts, Pierre, Dhaene, Tom, Demeester, Piet, Saeys, Yvan

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Distinct biological profiles associated with the risk of short-term relapse and mid/long-term relapse in Crohn’s disease patients stopping infliximab by Pierre, Nicolas, Huynh-Thu, Vân Anh, Baiwir, Dominique, Mazzucchelli, Gabriel, Fleron, Maximilien, Trzpiot, Lisette, Eppe, Gauthier, Laharie, D, Satsangi, J, Colombel, J F, Hertervig, E, Meuwis, Marie-Alice, Louis, Edouard

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Blood proteins related to immunoregulation or cellular junctions reveal distinct biological profiles associated with the risk of short-term versus mid/long-term relapse in Crohn’s... by Pierre, Nicolas, Huynh-Thu, Vân Anh, Allez, M., Bouhnik, Y., Laharie, D., Bourreille, A., Colombel, J. F., Meuwis, Marie-Alice, Louis, Edouard

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Context-dependent feature analysis with random forests by Sutera, Antonio, Louppe, Gilles, Huynh-Thu, Vân Anh, Wehenkel, Louis, Geurts, Pierre

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