Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe by Katz, Ella, Li, Jia-Jie, Jaegle, Benjamin, Ashkenazy, Haim, Abrahams, Shawn R, Bagaza, Clement, Holden, Samuel, Pires, Chris J, Angelovici, Ruthie, Kliebenstein, Daniel J

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Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae) by McKain, Michael R., Wickett, Norman, Zhang, Yeting, Ayyampalayam, Saravanaraj, McCombie, W. Richard, Chase, Mark W., Pires, J. Chris, dePamphilis, Claude W., Leebens-Mack, Jim

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Population Structure and Phylogenetic Relationships in a Diverse Panel of Brassica rapa L by Bird, Kevin A, An, Hong, Gazave, Elodie, Gore, Michael A, Pires, J Chris, Robertson, Larry D, Labate, Joanne A

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Convergent evolution of polyploid genomes from across the eukaryotic tree of life by Hao, Yue, Fleming, Jonathon, Petterson, Joanna, Lyons, Eric, Edger, Patrick P, Pires, J Chris, Thorne, Jeffrey L, Conant, Gavin C

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Comparative Analysis between Homoeologous Genome Segments of Brassica napus and Its Progenitor Species Reveals Extensive Sequence-Level Divergence by Cheung, Foo, Trick, Martin, Drou, Nizar, Lim, Yong Pyo, Park, Jee-Young, Kwon, Soo-Jin, Kim, Jin -A, Scott, Rod, Pires, J. Chris, Paterson, Andrew H, Town, Chris, Bancroft, Ian

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Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification by Steele, P. Roxanne, Pires, J. Chris

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Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS... by Hackenberg, Dieter, McKain, Michael R., Lee, Soon Goo, Roy Choudhury, Swarup, McCann, Tyler, Schreier, Spencer, Harkess, Alex, Pires, J. Chris, Wong, Gane Ka‐Shu, Jez, Joseph M., Kellogg, Elizabeth A., Pandey, Sona

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Patterns of Sequence Loss and Cytosine Methylation within a Population of Newly Resynthesized Brassica napus Allopolyploids by Lukens, Lewis N, Pires, J. Chris, Leon, Enrique, Vogelzang, Robert, Oslach, Lynne, Osborn, Thomas

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Chromosome inheritance and meiotic stability in allopolyploid Brassica napus by Xiong, Zhiyong, Gaeta, Robert T, Edger, Patrick P, Cao, Yao, Zhao, Kanglu, Zhang, Siqi, Pires, J Chris

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Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea by Grewe, Felix, Edger, Patrick P, Keren, Ido, Sultan, Laure, Pires, J Chris, Ostersetzer-Biran, Oren, Mower, Jeffrey P

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Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae) by Unruh, Sarah A., McKain, Michael R., Lee, Yung-I, Yukawa, Tomohisa, McCormick, Melissa K., Shefferson, Richard P., Smithson, Ann, Leebens-Mack, James H., Pires, J. Chris

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Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism by Norup, Maria F., Petersen, Gitte, Burrows, Sandie, Bouchenak-Khelladi, Yanis, Leebens-Mack, Jim, Pires, J. Chris, Linder, H. Peter, Seberg, Ole

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Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds by Wilhelmsson, Per K I, Chandler, Jake O, Fernandez-Pozo, Noe, Graeber, Kai, Ullrich, Kristian K, Arshad, Waheed, Khan, Safina, Hofberger, Johannes A, Buchta, Karl, Edger, Patrick P, Pires, J Chris, Schranz, M Eric, Leubner-Metzger, Gerhard, Rensing, Stefan A

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Unreduced gametes: meiotic mishap or evolutionary mechanism? by Mason, Annaliese S, Pires, J. Chris

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Molecular systematics of Allium subgenus Amerallium (Amaryllidaceae) in North America by Wheeler, Erica J, Mashayekhi, Saeideh, McNeal, Dale W, Columbus, J. Travis, Pires, J. Chris

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Clades, clocks, and continents: historical and biogeographical analysis of Myrtaceae, Vochysiaceae, and relatives in the Southern Hemisphere by Sytsma, K.J, Litt, A, Zjhra, M.L, Pires, J.C, Nepokroeff, M, Conti, E, Walker, J, Wilson, P.G

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Storytelling and story testing in domestication by Gerbault, Pascale, Allaby, Robin G., Boivin, Nicole, Rudzinski, Anna, Grimaldi, Ilaria M., Pires, J. Chris, Vigueira, Cynthia Climer, Dobney, Keith, Gremillion, Kristen J., Barton, Loukas, Arroyo-Kalin, Manuel, Purugganan, Michael D., de Casas, Rafael Rubio, Bollongino, Ruth, Burger, Joachim, Fuller, Dorian Q., Bradley, Daniel G., Balding, David J., Richerson, Peter J., Gilbert, M. Thomas P., Larson, Greger, Thomas, Mark G.

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Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards) by Edger, Patrick P, Tang, Michelle, Bird, Kevin A, Mayfield, Dustin R, Conant, Gavin, Mummenhoff, Klaus, Koch, Marcus A, Pires, J Chris

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Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells by Augustin, Megan M., Ruzicka, Dan R., Shukla, Ashutosh K., Augustin, Jörg M., Starks, Courtney M., O'Neil‐Johnson, Mark, McKain, Michael R., Evans, Bradley S., Barrett, Matt D., Smithson, Ann, Wong, Gane Ka‐Shu, Deyholos, Michael K., Edger, Patrick P., Pires, J. Chris, Leebens‐Mack, James H., Mann, David A., Kutchan, Toni M.

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Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time by Conant, Gavin C, Birchler, James A, Pires, J Chris

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