NCBI RefSeq: reference sequence standards through 25 years of curation and annotation by Goldfarb, Tamara, Kodali, Vamsi K, Pujar, Shashikant, Brover, Vyacheslav, Robbertse, Barbara, Farrell, Catherine M, Oh, Dong-Ha, Astashyn, Alexander, Ermolaeva, Olga, Haddad, Diana, Hlavina, Wratko, Hoffman, Jinna, Jackson, John D, Joardar, Vinita S, Kristensen, David, Masterson, Patrick, McGarvey, Kelly M, McVeigh, Richard, Mozes, Eyal, Murphy, Michael R, Schafer, Susan S, Souvorov, Alexander, Spurrier, Brett, Strope, Pooja K, Sun, Hanzhen, Vatsan, Anjana R, Wallin, Craig, Webb, David, Brister, J Rodney, Hatcher, Eneida, Kimchi, Avi, Klimke, William, Marchler-Bauer, Aron, Pruitt, Kim D, Thibaud-Nissen, Françoise, Murphy, Terence D

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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation by O'Leary, Nuala A, Wright, Mathew W, Brister, J Rodney, Ciufo, Stacy, Haddad, Diana, McVeigh, Rich, Rajput, Bhanu, Robbertse, Barbara, Smith-White, Brian, Ako-Adjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M, Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S, Kodali, Vamsi K, Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M, Murphy, Michael R, O'Neill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H, Rausch, Daniel, Riddick, Lillian D, Schoch, Conrad, Shkeda, Andrei, Storz, Susan S, Sun, Hanzhen, Thibaud-Nissen, Francoise, Tolstoy, Igor, Tully, Raymond E, Vatsan, Anjana R, Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J, Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D, Pruitt, Kim D

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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research by Morales, Joannella, Pujar, Shashikant, Loveland, Jane E., Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M., Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M., Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S., Kay, Michael, Kodali, Vamsi K., McGarvey, Kelly M., McMahon, Aoife, Mudge, Jonathan M., Murphy, Daniel N., Murphy, Michael R., Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R., Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D., Frankish, Adam, Cunningham, Fiona, Murphy, Terence D.

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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation by O'Leary, Nuala A., Wright, Mathew W., Brister, J. Rodney, Ciufo, Stacy, Haddad, Diana, McVeigh, Rich, Rajput, Bhanu, Robbertse, Barbara, Smith-White, Brian, Ako-Adjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M., Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S., Kodali, Vamsi K., Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M., Murphy, Michael R., O'Neill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H., Rausch, Daniel, Riddick, Lillian D., Schoch, Conrad, Shkeda, Andrei, Storz, Susan S., Sun, Hanzhen, Thibaud-Nissen, Francoise, Tolstoy, Igor, Tully, Raymond E., Vatsan, Anjana R., Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J., Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D., Pruitt, Kim D.

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Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle an... by Coyne, Robert S, Hannick, Linda, Shanmugam, Dhanasekaran, Hostetler, Jessica B, Brami, Daniel, Joardar, Vinita S, Johnson, Justin, Radune, Diana, Singh, Irtisha, Badger, Jonathan H, Kumar, Ujjwal, Saier, Milton, Wang, Yufeng, Cai, Hong, Gu, Jianying, Mather, Michael W, Vaidya, Akhil B, Wilkes, David E, Rajagopalan, Vidyalakshmi, Asai, David J, Pearson, Chad G, Findly, Robert C, Dickerson, Harry W, Wu, Martin, Martens, Cindy, Van de Peer, Yves, Roos, David S, Cassidy-Hanley, Donna M, Clark, Theodore G

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Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus by Fedorova, Natalie D, Khaldi, Nora, Joardar, Vinita S, Maiti, Rama, Amedeo, Paolo, Anderson, Michael J, Crabtree, Jonathan, Silva, Joana C, Badger, Jonathan H, Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J, Dyer, Paul S, Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M, Haas, Brian J, Inman, Jason M, Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M, Sundaram, Jaideep P, Sutton, Granger, Turner, Geoff, Venter, J Craig, White, Owen R, Whitty, Brett R, Youngman, Phil, Wolfe, Kenneth H, Goldman, Gustavo H, Wortman, Jennifer R, Jiang, Bo, Denning, David W, Nierman, William C

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Mouse genome annotation by the RefSeq project by McGarvey, Kelly M., Goldfarb, Tamara, Cox, Eric, Farrell, Catherine M., Gupta, Tripti, Joardar, Vinita S., Kodali, Vamsi K., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Webb, David, Wright, Mathew W., Murphy, Terence D., Pruitt, Kim D.

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Improved reference genome of Aedes aegypti informs arbovirus vector control by Matthews, Benjamin J., Dudchenko, Olga, Kingan, Sarah B., Koren, Sergey, Antoshechkin, Igor, Crawford, Jacob E., Glassford, William J., Herre, Margaret, Redmond, Seth N., Rose, Noah H., Weedall, Gareth D., Wu, Yang, Batra, Sanjit S., Brito-Sierra, Carlos A., Buckingham, Steven D., Campbell, Corey L., Chan, Saki, Cox, Eric, Evans, Benjamin R., Fansiri, Thanyalak, Filipović, Igor, Fontaine, Albin, Gloria-Soria, Andrea, Hall, Richard, Joardar, Vinita S., Jones, Andrew K., Kay, Raissa G. G., Kodali, Vamsi K., Lee, Joyce, Lycett, Gareth J., Mitchell, Sara N., Muehling, Jill, Murphy, Michael R., Omer, Arina D., Partridge, Frederick A., Peluso, Paul, Aiden, Aviva Presser, Ramasamy, Vidya, Rašić, Gordana, Roy, Sourav, Saavedra-Rodriguez, Karla, Sharan, Shruti, Sharma, Atashi, Smith, Melissa Laird, Turner, Joe, Weakley, Allison M., Zhao, Zhilei, Akbari, Omar S., Black, William C., Cao, Han, Darby, Alistair C., Hill, Catherine A., Johnston, J. Spencer, Murphy, Terence D., Raikhel, Alexander S., Sattelle, David B., Sharakhov, Igor V., White, Bradley J., Zhao, Li, Aiden, Erez Lieberman, Mann, Richard S., Lambrechts, Louis, Powell, Jeffrey R., Sharakhova, Maria V., Tu, Zhijian, Robertson, Hugh M., McBride, Carolyn S., Hastie, Alex R., Korlach, Jonas, Neafsey, Daniel E., Phillippy, Adam M., Vosshall, Leslie B.

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Genomic insights into the Ixodes scapularis tick vector of Lyme disease by Gulia-Nuss, Monika, Nuss, Andrew B, Meyer, Jason M, Sonenshine, Daniel E, Roe, R Michael, Waterhouse, Robert M, Sattelle, David B, de la Fuente, José, Ribeiro, Jose M, Megy, Karine, Thimmapuram, Jyothi, Miller, Jason R, Walenz, Brian P, Koren, Sergey, Hostetler, Jessica B, Thiagarajan, Mathangi, Joardar, Vinita S, Hannick, Linda I, Bidwell, Shelby, Hammond, Martin P, Young, Sarah, Zeng, Qiandong, Abrudan, Jenica L, Almeida, Francisca C, Ayllón, Nieves, Bhide, Ketaki, Bissinger, Brooke W, Bonzon-Kulichenko, Elena, Buckingham, Steven D, Caffrey, Daniel R, Caimano, Melissa J, Croset, Vincent, Driscoll, Timothy, Gilbert, Don, Gillespie, Joseph J, Giraldo-Calderón, Gloria I, Grabowski, Jeffrey M, Jiang, David, Khalil, Sayed M S, Kim, Donghun, Kocan, Katherine M, Koči, Juraj, Kuhn, Richard J, Kurtti, Timothy J, Lees, Kristin, Lang, Emma G, Kennedy, Ryan C, Kwon, Hyeogsun, Perera, Rushika, Qi, Yumin, Radolf, Justin D, Sakamoto, Joyce M, Sánchez-Gracia, Alejandro, Severo, Maiara S, Silverman, Neal, Šimo, Ladislav, Tojo, Marta, Tornador, Cristian, Van Zee, Janice P, Vázquez, Jesús, Vieira, Filipe G, Villar, Margarita, Wespiser, Adam R, Yang, Yunlong, Zhu, Jiwei, Arensburger, Peter, Pietrantonio, Patricia V, Barker, Stephen C, Shao, Renfu, Zdobnov, Evgeny M, Hauser, Frank, Grimmelikhuijzen, Cornelis J P, Park, Yoonseong, Rozas, Julio, Benton, Richard, Pedra, Joao H F, Nelson, David R, Unger, Maria F, Tubio, Jose M C, Tu, Zhijian, Robertson, Hugh M, Shumway, Martin, Sutton, Granger, Wortman, Jennifer R, Lawson, Daniel, Wikel, Stephen K, Nene, Vishvanath M, Fraser, Claire M, Collins, Frank H, Birren, Bruce, Nelson, Karen E, Caler, Elisabet, Hill, Catherine A

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Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus: e1000046 by Fedorova, Natalie D, Khaldi, Nora, Joardar, Vinita S, Maiti, Rama, Amedeo, Paolo, Anderson, Michael J, Crabtree, Jonathan, Silva, Joana C, Badger, Jonathan H, Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J, Dyer, Paul S, Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M, Haas, Brian J, Inman, Jason M, Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M, Sundaram, Jaideep P, Sutton, Granger, Turner, Geoff, Venter, J Craig, White, Owen R, Whitty, Brett R, Youngman, Phil, Wolfe, Kenneth H, Goldman, Gustavo H, Wortman, Jennifer R, Jiang, Bo, Denning, David W, Nierman, William C

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Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability by Joardar, Vinita, Abrams, Natalie F, Hostetler, Jessica, Paukstelis, Paul J, Pakala, Suchitra, Pakala, Suman B, Zafar, Nikhat, Abolude, Olukemi O, Payne, Gary, Andrianopoulos, Alex, Denning, David W, Nierman, William C

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Rickettsia Genome Overrun by Mobile Genetic Elements Provides Insight into the Acquisition of Genes Characteristic of an Obligate Intracellular Lifestyle by Gillespie, Joseph J, Joardar, Vinita, Williams, Kelly P, Driscoll, Timothy, Hostetler, Jessica B, Nordberg, Eric, Shukla, Maulik, Walenz, Brian, Hill, Catherine A, Nene, Vishvanath M, Azad, Abdu F, Sobral, Bruno W, Caler, Elisabet

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Whole genome comparison of Aspergillus flavus L-morphotype strain NRRL 3357 (type) and S-morphotype strain AF70 by Gilbert, Matthew K, Mack, Brian M, Moore, Geromy G, Downey, Darlene L, Lebar, Matthew D, Joardar, Vinita, Losada, Liliana, Yu, JiuJiang, Nierman, William C, Bhatnagar, Deepak

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Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence by Losada, Liliana, Sugui, Janyce A, Eckhaus, Michael A, Chang, Yun C, Mounaud, Stephanie, Figat, Abigail, Joardar, Vinita, Pakala, Suman B, Pakala, Suchitra, Venepally, Pratap, Fedorova, Natalie, Nierman, William C, Kwon-Chung, Kyung J

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Identification of Pseudomonas syringae pv. tomato genes induced during infection of Arabidopsis thaliana by Boch, Jens, Joardar, Vinita, Gao, Lisa, Robertson, Tara L., Lim, Melisa, Kunkel, Barbara N.

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Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation by Pujar, Shashikant, O'Leary, Nuala A, Farrell, Catherine M, Loveland, Jane E, Mudge, Jonathan M, Wallin, Craig, Girón, Carlos G, Diekhans, Mark, Barnes, If, Bennett, Ruth, Berry, Andrew E, Cox, Eric, Davidson, Claire, Goldfarb, Tamara, Gonzalez, Jose M, Hunt, Toby, Jackson, John, Joardar, Vinita, Kay, Mike P, Kodali, Vamsi K, Martin, Fergal J, McAndrews, Monica, McGarvey, Kelly M, Murphy, Michael, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Seal, Ruth L, Suner, Marie-Marthe, Webb, David, Zhu, Sophia, Aken, Bronwen L, Bruford, Elspeth A, Bult, Carol J, Frankish, Adam, Murphy, Terence, Pruitt, Kim D

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UV Irradiation and Desiccation Modulate the Three-dimensional Extracellular Matrix of Nostoc commune (Cyanobacteria) by Wright, Deborah J., Smith, Sue C., Joardar, Vinita, Scherer, Siegfried, Jervis, Jody, Warren, Andrew, Helm, Richard F., Potts, Malcolm

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Whole-Genome Sequence Analysis of Pseudomonas syringae pv. phaseolicola 1448A Reveals Divergence among Pathovars in Genes Involved in Virulence and Transposition by JOARDAR, Vinita, LINDEBERG, Magdalen, MADUPU, Ramana, NELSON, William C, ROSOVITZ, M. J, SULLIVAN, Steven, CRABTREE, Jonathan, CREASY, Todd, DAVIDSEN, Tanja, HAFT, Dan H, ZAFAR, Nikhat, LIWEI ZHOU, JACKSON, Robert W, HALPIN, Rebecca, HOLLEY, Tara, KHOURI, Hoda, FELDBLYUM, Tamara, WHITE, Owen, FRASER, Claire M, CHATTERJEE, Arun K, CARTINHOUR, Sam, SCHNEIDER, David J, MANSFIELD, John, SELENGUT, Jeremy, COLLMER, Alan, BUELL, C. Robin, DODSON, Robert, BRINKAC, Lauren M, DAUGHERTY, Sean C, DEBOY, Robert, DURKIN, A. Scott, GIGLIO, Michelle Gwinn

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Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle by Kirkness, Ewen F., Haas, Brian J., Sun, Weilin, Braig, Henk R., Perotti, M. Alejandra, Clark, John M., Lee, Si Hyeock, Robertson, Hugh M., Kennedy, Ryan C., Elhaik, Eran, Gerlach, Daniel, Kriventseva, Evgenia V., Elsik, Christine G., Graur, Dan, Hill, Catherine A., Veenstra, Jan A., Walenz, Brian, Tubío, José Manuel C., Ribeiro, José M. C., Rozas, Julio, Johnston, J. Spencer, Reese, Justin T., Popadic, Aleksandar, Tojo, Marta, Raoult, Didier, Reed, David L., Tomoyasu, Yoshinori, Krause, Emily, Mittapalli, Omprakash, Margam, Venu M., Li, Hong-Mei, Meyer, Jason M., Johnson, Reed M., Romero-Severson, Jeanne, VanZee, Janice Pagel, Alvarez-Ponce, David, Vieira, Filipe G., Aguadé, Montserrat, Guirao-Rico, Sara, Anzola, Juan M., Yoon, Kyong S., Strycharz, Joseph P., Unger, Maria F., Christley, Scott, Lobo, Neil F., Seufferheld, Manfredo J., Wang, NaiKuan, Dasch, Gregory A., Struchiner, Claudio J., Madey, Greg, Hannick, Linda I., Bidwell, Shelby, Joardar, Vinita, Caler, Elisabet, Shao, Renfu, Barker, Stephen C., Cameron, Stephen, Bruggner, Robert V., Regier, Allison, Johnson, Justin, Viswanathan, Lakshmi, Utterback, Terry R., Sutton, Granger G., Lawson, Daniel, Waterhouse, Robert M., Venter, J. Craig, Strausberg, Robert L., Berenbaum, May R., Collins, Frank H., Zdobnov, Evgeny M., Pittendrigh, Barry R.

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Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3 by Losada, Liliana, Pakala, Suman B., Fedorova, Natalie D., Joardar, Vinita, Shabalina, Svetlana A., Hostetler, Jessica, Pakala, Suchitra M., Zafar, Nikhat, Thomas, Elizabeth, Rodriguez-Carres, Marianela, Dean, Ralph, Vilgalys, Rytas, Nierman, William C., Cubeta, Marc A.

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