MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics by Wang, Yingfeng, Kora, Guruprasad, Bowen, Benjamin P, Pan, Chongle

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ProRata:  A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation by Pan, Chongle, Kora, Guruprasad, McDonald, W. Hayes, Tabb, David L, VerBerkmoes, Nathan C, Hurst, Gregory B, Pelletier, Dale A, Samatova, Nagiza F, Hettich, Robert L

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Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics by Pan, Chongle, Kora, Guruprasad, Tabb, David L, Pelletier, Dale A, McDonald, W. Hayes, Hurst, Gregory B, Hettich, Robert L, Samatova, Nagiza F

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Conserved synteny at the protein family level reveals genes underlying Shewanella species’ cold tolerance and predicts their novel phenotypes by Karpinets, Tatiana V., Obraztsova, Anna Y., Wang, Yanbing, Schmoyer, Denise D., Kora, Guruprasad H., Park, Byung H., Serres, Margrethe H., Romine, Margaret F., Land, Miriam L., Kothe, Terence B., Fredrickson, Jim K., Nealson, Kenneth H., Uberbacher, Edward C.

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Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions by Karpinets, Tatiana V, Romine, Margaret F, Schmoyer, Denise D, Kora, Guruprasad H, Syed, Mustafa H, Leuze, Michael R, Serres, Margrethe H, Park, Byung H, Samatova, Nagiza F, Uberbacher, Edward C

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Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam by Chai, Juanjuan, Kora, Guruprasad, Ahn, Tae-Hyuk, Hyatt, Doug, Pan, Chongle

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Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1 by Syed, Mustafa H, Karpinets, Tatiana V, Leuze, Michael R, Kora, Guruprasad H, Romine, Margaret R, Uberbacher, Edward C

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Quality scores for 32,000 genomes by Land, Miriam L, Hyatt, Doug, Jun, Se-Ran, Kora, Guruprasad H, Hauser, Loren J, Lukjancenko, Oksana, Ussery, David W

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High performance statistical computing with parallel R: applications to biology and climate modelling by Samatova, Nagiza F, Branstetter, Marcia, Ganguly, Auroop R, Hettich, Robert, Khan, Shiraj, Kora, Guruprasad, Li, Jiangtian, Ma, Xiaosong, Pan, Chongle, Shoshani, Arie, Yoginath, Srikanth

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Transparent runtime parallelization of the R scripting language by Li, Jiangtian, Ma, Xiaosong, Yoginath, Srikanth, Kora, Guruprasad, Samatova, Nagiza F.

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Transparent runtime parallelization of the R scripting language: Data Intensive Computing by JIANGTIAN LI, XIAOSONG MA, YOGINATH, Srikanth, KORA, Guruprasad, SAMATOVA, Nagiza F

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ShewRegDB: a Visualization Environment for Integration of Experimental and In Silico Derived Regulatory Information in Shewanella oneidensis MR-1 by Syed, Mustafa H, Karpinets, Tatiana V, Leuze, Michael Rex, Kora, Guruprasad H, Romine, Margaret, Uberbacher, Edward C

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