RESCRIPt: Reproducible sequence taxonomy reference database management by Robeson, 2nd, Michael S, O'Rourke, Devon R, Kaehler, Benjamin D, Ziemski, Michal, Dillon, Matthew R, Foster, Jeffrey T, Bokulich, Nicholas A

Get full text

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin by Bokulich, Nicholas A, Kaehler, Benjamin D, Rideout, Jai Ram, Dillon, Matthew, Bolyen, Evan, Knight, Rob, Huttley, Gavin A, Gregory Caporaso, J

Get full text

Species abundance information improves sequence taxonomy classification accuracy by Kaehler, Benjamin D., Bokulich, Nicholas A., McDonald, Daniel, Knight, Rob, Caporaso, J. Gregory, Huttley, Gavin A.

Get full text

Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences by Ziemski, Michal, Wisanwanichthan, Treepop, Bokulich, Nicholas A, Kaehler, Benjamin D

Get full text

Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods by Bokulich, Nicholas A., Ziemski, Michal, Robeson, Michael S., Kaehler, Benjamin D.

Get full text

Did aculeate silk evolve as an antifouling material? by Sutherland, Tara D, Sriskantha, Alagacone, Rapson, Trevor D, Kaehler, Benjamin D, Huttley, Gavin A

Get full text

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops by Dillon, Matthew R, Bolyen, Evan, Adamov, Anja, Belk, Aeriel, Borsom, Emily, Burcham, Zachary, Debelius, Justine W, Deel, Heather, Emmons, Alex, Estaki, Mehrbod, Herman, Chloe, Keefe, Christopher R, Morton, Jamie T, Oliveira, Renato R M, Sanchez, Andrew, Simard, Anthony, Vázquez-Baeza, Yoshiki, Ziemski, Michal, Miwa, Hazuki E, Kerere, Terry A, Coote, Carline, Bonneau, Richard, Knight, Rob, Oliveira, Guilherme, Gopalasingam, Piraveen, Kaehler, Benjamin D, Cope, Emily K, Metcalf, Jessica L, Robeson Ii, Michael S, Bokulich, Nicholas A, Caporaso, J Gregory

Get full text

Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies by Kaehler, Benjamin D.

Get full text

Genetic Distance for a General Non-Stationary Markov Substitution Process by Kaehler, Benjamin D., Von Bing Yap, Zhang, Rongli, Huttley, Gavin A.

Get full text

q2-sample-classifier: machine-learning tools for microbiome classification and regression by Bokulich, Nicholas A, Dillon, Matthew R, Bolyen, Evan, Kaehler, Benjamin D, Huttley, Gavin A, Caporaso, J Gregory

Get full text

Standard Codon Substitution Models Overestimate Purifying Selection for Nonstationary Data by Kaehler, Benjamin D., Yap, Von Bing, Huttley, Gavin A.

Get full text

Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins by Maitip, Jakkrawut, Trueman, Holly E., Kaehler, Benjamin D., Huttley, Gavin A., Chantawannakul, Panuwan, Sutherland, Tara D.

Get full text

RESCRIPt: Reproducible sequence taxonomy reference database management by Michael S. Robeson, Devon R. O’Rourke, Benjamin D. Kaehler, Michal Ziemski, Matthew R. Dillon, Jeffrey T. Foster, Nicholas A. Bokulich

Get full text

Standard Codon Substitution Models Overestimate Purifying Selection for Non-Stationary Data by Kaehler, Benjamin D., Bing Yap, Von, Huttley, Gavin A.

Get full text

Standard codon substitution models overestimate purifying selection for non-stationary data by Kaehler, Benjamin D, Yap, Von Bing, Huttley, Gavin A

Get full text

Optimizing taxonomic classification of marker gene sequences by Bokulich, Nicholas A, Kaehler, Benjamin D, Jai Ram Rideout, Dillon, Matthew, Bolyen, Evan, Knight, Rob, Huttley, Gavin A, Caporaso, J Gregory

Get full text

Full Reconstruction of Non-Stationary Strand-Symmetric Models on Rooted Phylogenies by Kaehler, Benjamin D

Get full text

Baseline Biomarkers for Outcome of Melanoma Patients Treated with Pembrolizumab by Weide, Benjamin, Martens, Alexander, Hassel, Jessica C, Berking, Carola, Postow, Michael A, Bisschop, Kees, Simeone, Ester, Mangana, Johanna, Schilling, Bastian, Di Giacomo, Anna Maria, Brenner, Nicole, Kähler, Katharina, Heinzerling, Lucie, Gutzmer, Ralf, Bender, Armin, Gebhardt, Christoffer, Romano, Emanuela, Meier, Friedegund, Martus, Peter, Maio, Michele, Blank, Christian, Schadendorf, Dirk, Dummer, Reinhard, Ascierto, Paolo A, Hospers, Geke, Garbe, Claus, Wolchok, Jedd D

Get full text

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science by Bolyen, Evan, Jai Ram Rideout, Bokulich, Nicholas A, Abnet, Christian, Al-Ghalith, Gabriel A, Alexander, Harriet, Alm, Eric J, Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E, Bittinger, Kyle, Asker Brejnrod, Brislawn, Colin J, C Titus Brown, Callahan, Benjamin J, Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily, Da Silva, Ricardo, Dorrestein, Pieter C, Douglas, Gavin M, Durall, Daniel M, Duvallet, Claire, Edwardson, Christian F, Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M, Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin, Janssen, Stefan, Jarmusch, Alan K, Jiang, Lingjing, Kaehler, Benjamin, Kyo Bin Kang, Keefe, Christopher R, Kelley, Scott T, Knights, Dan, Koester, Irina, Kosciolek, Tomasz, Kreps, Jorden, Langille, Morgan GI, Lee, Joslynn, Ley, Ruth, Yong-Xin, Liu, Erikka Loftfield, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan D, McDonald, Daniel, McIver, Lauren J, Melnik, Alexey V, Metcalf, Jessica L, Morgan, Sydney C, Morton, Jamie, Louis Felix Nothias, Pearson, Talima, Peoples, Samuel L, Petras, Daniel, Mary Lai Preuss, Pruesse, Elmar, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S, Rosenthal, Patrick, Segata, Nicola, Shiffer, Arron, Sinha, Rashmi, Se Jin Song, Spear, John R, Swafford, Austin D, Thompson, Luke R, Torres, Pedro J, Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J, Ul-Hasan, Sabah, Justin JJ Vander Hooft, Vargas, Fernando, Vázquez-Baeza, Yoshiki, Vogtmann, Emily, Max von Hippel, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C, Chase HD Williamson, Willis, Amy D, Zhenjiang Zech Xu, Zaneveld, Jesse R, Zhu, Qiyun, Caporaso, J Gregory

Get full text

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science by Bolyen, Evan, Jai Ram Rideout, Bokulich, Nicholas A, Abnet, Christian, Al-Ghalith, Gabriel A, Alexander, Harriet, Alm, Eric J, Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E, Bittinger, Kyle, Asker Brejnrod, Brislawn, Colin J, C Titus Brown, Callahan, Benjamin J, Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily, Da Silva, Ricardo, Dorrestein, Pieter C, Douglas, Gavin M, Durall, Daniel M, Duvallet, Claire, Edwardson, Christian F, Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M, Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin, Janssen, Stefan, Jarmusch, Alan K, Jiang, Lingjing, Kaehler, Benjamin, Kyo Bin Kang, Keefe, Christopher R, Kelley, Scott T, Knights, Dan, Koester, Irina, Kosciolek, Tomasz, Kreps, Jorden, Langille, Morgan GI, Lee, Joslynn, Ley, Ruth, Yong-Xin, Liu, Erikka Loftfield, Lozupone, Catherine, Maher, Massoud, Marotz, Clarisse, Martin, Bryan, McDonald, Daniel, McIver, Lauren J, Melnik, Alexey V, Metcalf, Jessica L, Morgan, Sydney C, Morton, Jamie, Louis Felix Nothias, Pearson, Talima, Peoples, Samuel L, Petras, Daniel, Mary Lai Preuss, Pruesse, Elmar, Rasmussen, Lasse Buur, Rivers, Adam, Robeson, Michael S, Rosenthal, Patrick, Segata, Nicola, Shaffer, Michael, Shiffer, Arron, Sinha, Rashmi, Se Jin Song, Spear, John R, Swafford, Austin D, Thompson, Luke R, Torres, Pedro J, Trinh, Pauline, Tripathi, Anupriya, Turnbaugh, Peter J, Ul-Hasan, Sabah, Justin JJ Vander Hooft, Vargas, Fernando, Vázquez-Baeza, Yoshiki, Vogtmann, Emily, Max von Hippel, Walters, William, Wan, Yunhu, Wang, Mingxun, Warren, Jonathan, Weber, Kyle C, Chase HD Williamson, Willis, Amy D, Zhenjiang Zech Xu, Zaneveld, Jesse R, Knight, Rob

Get full text