Genome-scale prediction of moonlighting proteins using diverse protein association information by Khan, Ishita K, Kihara, Daisuke

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In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment by Chitale, Meghana, Khan, Ishita K, Kihara, Daisuke

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NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology by Wei, Qing, Khan, Ishita K, Ding, Ziyun, Yerneni, Satwica, Kihara, Daisuke

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DextMP: deep dive into text for predicting moonlighting proteins by Khan, Ishita K, Bhuiyan, Mansurul, Kihara, Daisuke

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy by Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M E, Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, Bkc, Dukka, Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Hieta, Reija, Legge, Duncan, Lovering, Ruth C, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E, Pavlidis, Paul, Feng, Shou, Cejuela, Juan M, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel

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Prediction of protein group function by iterative classification on functional relevance network by Khan, Ishita K, Jain, Aashish, Rawi, Reda, Bensmail, Halima, Kihara, Daisuke

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The PFP and ESG protein function prediction methods in 2014: effect of database updates and ensemble approaches by Khan, Ishita K, Wei, Qing, Chapman, Samuel, Kc, Dukka B, Kihara, Daisuke

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Evaluation of function predictions by PFP, ESG,and PSI-BLAST for moonlighting proteins by Khan, Ishita, Chitale, Meghana, Rayon, Catherine, Kihara, Daisuke

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PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool by Khan, Ishita K, Wei, Qing, Chitale, Meghana, Kihara, Daisuke

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Missing gene identification using functional coherence scores by Chitale, Meghana, Khan, Ishita K., Kihara, Daisuke

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IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks by Yerneni, Satwica, Khan, Ishita K., Wei, Qing, Kihara, Daisuke

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy by Bankapur, Asma R, Kahanda, Indika, Verspoor, Karin M, Koo, Emily, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sayed ME Sahraeian, Martelli, Pier Luigi, Profiti, Giuseppe, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Hakala, Kai, Mehryary, Farrokh, Salakoski, Tapio, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Holm, Liisa, Ching-Tai, Chen, Bryson, Kevin, Minneci, Federico, Chapman, Samuel, Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Cibrian-Uhalte, Elena, Denny, Paul, Hieta, Reija, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Léon-Charles Tranchevent, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Pavlidis, Paul, Goldberg, Tatyana, Richter, Lothar, Salamov, Asaf, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Wei, Ning, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Giollo, Manuel, Piovesan, Damiano, Angela del Pozo, Fernández, José M, Valencia, Alfonso, Tress, Michael L, Benso, Alfredo, Stefano Di Carlo, Savino, Alessandro, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Vencio, Ricardo ZN, Sharan, Malvika, Kansakar, Lakesh, Vucetic, Slobodan, Sternberg, Michael JE, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, O'Donovan, Claire, Robinson, Peter N, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Rost, Burkhard, Greene, Casey S, Friedberg, Iddo, Radivojac, Predrag

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An expanded evaluation of protein function prediction methods shows an improvement in accuracy by Jiang, Yuxiang, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M.E, Casadio, Rita, Cao, Renzhi, Altenhoff, Adrian, Dogan, Tunca, Hakala, Kai, Mehryary, Farrokh, Salakoski, Tapio, Oates, Matt, Gough, Julian, Koskinen, Patrik, Chen, Ching-Tai, Hsu, Wen-Lian, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, Bkc, Dukka, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Legge, Duncan, Melidoni, Anna N, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Falda, Marco, Fontana, Paolo, Ferrari, Carlo, Giollo, Manuel, Tosatto, Silvio C.E, del Pozo, Angela, Fernández, José M, Tress, Michael L, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Valentini, Giorgio, Bargsten, Joachim W, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C, Vencio, Ricardo ZN, Sharan, Malvika, Vogel, Jörg, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J.E, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, Robinson, Peter N, Moreau, Yves, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Orengo, Christine A, Rost, Burkhard, Greene, Casey S, Mooney, Sean D, Friedberg, Iddo

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Delineating Crosstalk Mechanisms of the Ubiquitin Proteasome System That Regulate Apoptosis by Gupta, Ishita, Singh, Kanika, Varshney, Nishant K, Khan, Sameena

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Emergence of Members of TRAF and DUB of Ubiquitin Proteasome System in the Regulation of Hypertrophic Cardiomyopathy by Gupta, Ishita, Varshney, Nishant K, Khan, Sameena

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Corrigendum: Emergence of Members of TRAF and DUB of Ubiquitin Proteasome System in the Regulation of Hypertrophic Cardiomyopathy by Gupta, Ishita, Varshney, Nishant K, Khan, Sameena

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Association of body mass index with coronary artery disease and chronic kidney disease: An autopsy study by Khan, Rashid Nehal, Kinra, Prateek, Kumar, Naveen, Radhakrishna, K.V., Khera, Anurag, Kashif, A.W., Anandhakrishnan, T., Manral, Ishita

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Orthostatic Hypotension in Benign Prostatic Hyperplasia Patients and Its Association With Alpha-1 Antagonist Use: A Comprehensive Literature Review by Abubakar, Muhammad, Prasad, Rachna, Salim, Siffat S, Basavaraju, Deepak, Khan, Munazza, Lateef, Ibrahim K, Furqan, Ahmad, Raza, Saud, Gupta, Ishita, Singla, Deepak, Adil, Hira, Naeem, Ather

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The indian genome variation database (IGBdb) : a project overview by GENOME, Indian, CONSORTIUM, Variation

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Role of Integrated PET/CT Fusion in Lung Carcinoma by Joshi, S C, Pant, Ishita, Khan, F A, Shukla, A N, Gokula, K

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