Mosaic and Intronic Mutations in TSC1/TSC2 Explain the Majority of TSC Patients with No Mutation Identified by Conventional Testing by Tyburczy, Magdalena E, Dies, Kira A, Glass, Jennifer, Camposano, Susana, Chekaluk, Yvonne, Thorner, Aaron R, Lin, Ling, Krueger, Darcy, Franz, David N, Thiele, Elizabeth A, Sahin, Mustafa, Kwiatkowski, David J

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Monoallelic loss of the imprinted gene Grb10 promotes tumor formation in irradiated Nf1+/- mice by Mroue, Rana, Huang, Brian, Braunstein, Steve, Firestone, Ari J, Nakamura, Jean L

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GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination by Ginno, Paul A, Lim, Yoong Wearn, Lott, Paul L, Korf, Ian, Chédin, Frédéric

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MPBLAST : improved BLAST performance with multiplexed queries by Korf, Ian, Gish, Warren

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Assemblathon 1: a competitive assessment of de novo short read assembly methods by Earl, Dent, Bradnam, Keith, St John, John, Darling, Aaron, Lin, Dawei, Fass, Joseph, Yu, Hung On Ken, Buffalo, Vince, Zerbino, Daniel R, Diekhans, Mark, Nguyen, Ngan, Ariyaratne, Pramila Nuwantha, Sung, Wing-Kin, Ning, Zemin, Haimel, Matthias, Simpson, Jared T, Fonseca, Nuno A, Birol, İnanç, Docking, T Roderick, Ho, Isaac Y, Rokhsar, Daniel S, Chikhi, Rayan, Lavenier, Dominique, Chapuis, Guillaume, Naquin, Delphine, Maillet, Nicolas, Schatz, Michael C, Kelley, David R, Phillippy, Adam M, Koren, Sergey, Yang, Shiaw-Pyng, Wu, Wei, Chou, Wen-Chi, Srivastava, Anuj, Shaw, Timothy I, Ruby, J Graham, Skewes-Cox, Peter, Betegon, Miguel, Dimon, Michelle T, Solovyev, Victor, Seledtsov, Igor, Kosarev, Petr, Vorobyev, Denis, Ramirez-Gonzalez, Ricardo, Leggett, Richard, MacLean, Dan, Xia, Fangfang, Luo, Ruibang, Li, Zhenyu, Xie, Yinlong, Liu, Binghang, Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J, Yin, Shuangye, Sharpe, Ted, Hall, Giles, Kersey, Paul J, Durbin, Richard, Jackman, Shaun D, Chapman, Jarrod A, Huang, Xiaoqiu, DeRisi, Joseph L, Caccamo, Mario, Li, Yingrui, Jaffe, David B, Green, Richard E, Haussler, David, Korf, Ian, Paten, Benedict

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The Bioperl toolkit: Perl modules for the life sciences by Stajich, Jason E, Block, David, Boulez, Kris, Brenner, Steven E, Chervitz, Stephen A, Dagdigian, Chris, Fuellen, Georg, Gilbert, James G R, Korf, Ian, Lapp, Hilmar, Lehväslaiho, Heikki, Matsalla, Chad, Mungall, Chris J, Osborne, Brian I, Pocock, Matthew R, Schattner, Peter, Senger, Martin, Stein, Lincoln D, Stupka, Elia, Wilkinson, Mark D, Birney, Ewan

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The syntenic relationship of the zebrafish and human genomes by Barbazuk, W B, Korf, I, Kadavi, C, Heyen, J, Tate, S, Wun, E, Bedell, J A, McPherson, J D, Johnson, S L

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Integrating genomic homology into gene structure prediction by Korf, Ian, Flicek, Paul, Duan, Daniel, Brent, Michael R.

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Improving laboratory animal genetic reporting: LAG-R guidelines by Teboul, Lydia, Amos-Landgraf, James, Benavides, Fernando J., Birling, Marie-Christine, Brown, Steve D. M., Bryda, Elizabeth, Bunton-Stasyshyn, Rosie, Chin, Hsian-Jean, Crispo, Martina, Delerue, Fabien, Dobbie, Michael, Franklin, Craig L., Fuchtbauer, Ernst-Martin, Gao, Xiang, Golzio, Christelle, Haffner, Rebecca, Hérault, Yann, Hrabe de Angelis, Martin, Lloyd, Kevin C. Kent, Magnuson, Terry R., Montoliu, Lluis, Murray, Stephen A., Nam, Ki-Hoan, Nutter, Lauryl M. J., Pailhoux, Eric, Pardo Manuel de Villena, Fernando, Peterson, Kevin, Reinholdt, Laura, Sedlacek, Radislav, Seong, Je Kyung, Shiroishi, Toshihiko, Smith, Cynthia, Takeo, Toru, Tinsley, Louise, Vilotte, Jean-Luc, Warming, Søren, Wells, Sara, Whitelaw, C. Bruce, Yoshiki, Atsushi, Pavlovic, Guillaume

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MaskerAid : a performance enhancement to RepeatMasker by Bedell, Joseph A., Korf, Ian, Gish, Warren

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Epilepsy and Neurodevelopmental Comorbidities in Tuberous Sclerosis Complex: A Natural History Study by Gupta, Ajay, de Bruyn, Gwendolyn, Tousseyn, Simon, Krishnan, Balu, Lagae, Lieven, Agarwal, Nitin, Minnesota Epilepsy Group, Frost, Michael, Sparagana, Steven, LaJoie, Josiane, Riviello, James, Devinsky, Orrin, Thiele, Elizabeth, McClintock, William, Kohrman, Michael, Brown, Candida, Kuperman, Rachel, Wu, Joyce, Northrup, Hope, Bebin, E. Martina, Korf, Bruce, Gupta, Ajay, Levisohn, Paul, Koh, Susan, O'Neil Miller, Ian, Duchowny, Michael, Ashwal, Stephen, Jansen, Anna, Crino, Peter, Pollard, John, Nathanson, Kate, Sahin, Mustafa, Krueger, Darcy A., Wong, Michael, Jeong, Anna

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Identification of tissue-specific promoters in chickens by Kern, C, Saelao, P, Wang, Y, Halstead, M, Chitwood, J, Kim, T, Ross, P J, Korf, I, Delany, M E, Cheng, H, Zhou, H

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P2025 Identification of tissue-specific promoters in chickens by Kern, C., Saelao, P., Wang, Y., Halstead, M., Chitwood, J., Kim, T., Ross, P. J., Korf, I., Delany, M. E., Cheng, H., Zhou, H.

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The All of Us Research Program: Data quality, utility, and diversity by Ramirez, Andrea H., Halvorson, Alese, Qian, Jun, Mayo, Kelsey, Basford, Melissa, Deflaux, Nicole, Muthuraman, Karthik N., Xu, Hua, Wilkins, Consuelo, Anton-Culver, Hoda, Boerwinkle, Eric, Cohn, Elizabeth, Schully, Sheri D., Argos, Maria, Cronin, Robert M., O’Donnell, Christopher, Fouad, Mona, Greenland, Philip, Hebbring, Scott J., Karlson, Elizabeth W., Khatri, Parinda, Korf, Bruce, Sodeke, Stephen, Wilbanks, John, Hentges, Justin, Mockrin, Stephen, Lunt, Christopher, Devaney, Stephanie A., Gebo, Kelly, Denny, Joshua C., Harris, Paul A., Roden, Dan M., Ahmedani, Brian, Cole Johnson, Christine D., Ahsan, Habib, Antoine-LaVigne, Donna, Anton-Culver, Hoda, Topol, Eric, Jain, Praduman, Korf, Bruce, Behringer, Melissa, Gharavi, Ali G., Hripcsak, George, Bier, Louise, Hebbring, Scott Joseph, Burnside, Elizabeth, Drezner, Marc K., Channamsetty, Veena, Montalvo, Wanda, Chinea, Carmen, Jenks, Nancy, Cicek, Mine, Thibodeau, Steve, Collier, Ever, Winkler, Joyce, Corcoran, John, Daviglus, Martha, Denny, Joshua, Doheny, Kim, Eichler, Evan, Lennon, Niall, Gabriel, Stacey, Gibbs, Richard, Gil Rico, Edgar M., Glazer, David, Greenland, Philip, Hogan, William R., Pollan, Cliff, Okun, Sally, Karlson, Elizabeth W., Smoller, Jordan, Ross, Margaret Elizabeth, Kaushal, Rainu, Khatri, Parinda, Kheterpal, Vik, Ojo, Akinlolu, Moreno, Francisco A., Menon, Usha, Malik-Gagnon, Lynda, Mangravite, Lara, Marallo, Adria, Visweswaran, Shyam, Reis, Steven, Moore, John, Talavera, Gregory, O'Donnell, Christopher, Ohno-Machado, Lucila, Randal, Fornessa, Theodorou, Andreas A., Roxas-Murray, Mercedita, Stark, Louisa, Tepp, Ronnie, Topper, Scott, Weidman, Lisa, Weiss, Scott T., Wellis, David, Whittle, Jeffrey, Wilson, Amanda, Zuchner, Stephan, Zwick, Michael E.

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Serial BLAST searching by KORF, Ian

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The Genome 10K Project: A Way Forward by Koepfli, Klaus-Peter, Paten, Benedict, O’Brien, Stephen J

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P1043 Identification of regulatory elements in 3 domesticated species by Zhou, H., Delany, M. E., Cheng, H., Ross, P. J., Korf, I., Kern, C., Saelao, P., Wang, Y., Kim, T., Chitwood, J., Halstead, M., Medrano, J. F., Van Eenennaam, A. L., Tuggle, C. K., Ernst, C. W.

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Identification of regulatory elements in 3 domesticated species by Zhou, H, Delany, M E, Cheng, H, Ross, P J, Korf, I, Kern, C, Saelao, P, Wang, Y, Kim, T, Chitwood, J, Halstead, M, Medrano, J F, Van Eenennaam, A L, Tuggle, C K, Ernst, C W

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Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map by Flicek, Paul, Keibler, Evan, Hu, Ping, Korf, Ian, Brent, Michael R

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Drug-Resistant Epilepsy in Tuberous Sclerosis Complex Is Associated With TSC2 Genotype: More Findings From the Preventing Epilepsy Using Vigatrin (PREVeNT) Trial by Farach, Laura S., Richard, Melissa A., Wulsin, Aynara C., Bebin, Elizabeth M., Krueger, Darcy A., Sahin, Mustafa, Porter, Brenda E., McPherson, Tarrant O., Peters, Jurriaan M., O'Kelley, Sarah, Taub, Katherine S., Rajaraman, Rajsekar, Randle, Stephanie C., McClintock, William M., Koenig, Mary Kay, Frost, Michael D., Werner, Klaus, Nolan, Danielle A., Wong, Michael, Cutter, Gary, Northrup, Hope, Au, Kit Sing, Bebin, E. Martina, Krueger, Darcy, Sahin, Mustafa, Flamini, Robert, Sergott, Robert C., Cutter, Gary, McPherson, Tarrant, Peri, Kalyani, Krefting, Jessica, Porter, Brenda, Peters, Jurriaan M., Taub, Katherine, Litt, Brian, Wu, Joyce, Lagory, Denise, Korf, Bruce, Messiaen, Ludwig, O'Kelley, Sarah, Biasini, Fred, Byars, Anna, Roberds, Steven L., Rushing, Gabrielle, Griffith, Molly, Davis, Peter, Hansen, Ellen, Arcasoy, Emine, Phillips, Jennifer, Solidum, Rayann, Rajaraman, Rajsekar, Gulsrud, Amanda, Solis, Natalie, Randle, Stephanie, Patrick, Kristina, Lee-Eng, Jacqueline, Frost, Mike D., Branson, Janet, Ellis, Sarah, Wong, Michael, White, Desiree, Novak, Olga, Fasciola, Ashley, Werner, Klaus, Lorenzi, Jill, Layer, Marcus, Thomas, Allison, Chanbers, Emily, McClintock, William M., Berl, Madison, Elling, Nancy, Kassoff, Bergen, Hardie, Kinaya, Nolan, Danielle, DeBastos, Angela, Batchelder, Christine, Koening, Mary Kay, Northrup, Hope, Au, Kit Su, Pearson, Deborah, Mansour, Rosleen, Farach, Laura, Salazar, Elida

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