Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline by Kroll, Karl W., Mokaram, Nima E., Pelletier, Alexander R., Frankhouser, David E., Westphal, Maximillian S., Stump, Paige A., Stump, Cameron L., Bundschuh, Ralf, Blachly, James S., Yan, Pearlly

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MuCor: mutation aggregation and correlation by Kroll, Karl W, Eisfeld, Ann-Katherin, Lozanski, Gerard, Bloomfield, Clara D, Byrd, John C, Blachly, James S

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Mutations in the CCND1 and CCND2 genes are frequent events in adult patients with t(8;21)(q22;q22) acute myeloid leukemia by Eisfeld, A-K, Kohlschmidt, J, Schwind, S, Nicolet, D, Blachly, J S, Orwick, S, Shah, C, Bainazar, M, Kroll, K W, Walker, C J, Carroll, A J, Powell, B L, Stone, R M, Kolitz, J E, Baer, M R, de la Chapelle, A, Mrózek, K, Byrd, J C, Bloomfield, C D

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Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline by Karl W. Kroll, Nima E. Mokaram, Alexander R. Pelletier, David E. Frankhouser, Maximillian S. Westphal, Paige A. Stump, Cameron L. Stump, Ralf Bundschuh, James S. Blachly, Pearlly Yan

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Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline by Kroll, Karl W, Mokaram, Nima E, Pelletier, Alexander R, Frankhouser, David E, Westphal, Maximillian S, Stump, Paige A, Stump, Cameron L, Bundschuh, Ralf, Blachly, James S, Yan, Pearlly

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In situ secondary organic aerosol formation from ambient pine forest air using an oxidation flow reactor by Palm, Brett B, Campuzano-Jost, Pedro, Ortega, Amber M, Day, Douglas A, Kaser, Lisa, Jud, Werner, Karl, Thomas, Hansel, Armin, Hunter, James F, Cross, Eben S, Kroll, Jesse H, Peng, Zhe, Brune, William H, Jimenez, Jose L

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Constraining nucleation, condensation, and chemistry in oxidation flow reactors using size-distribution measurements and aerosol microphysical modeling by Hodshire, Anna L, Palm, Brett B, Alexander, M. Lizabeth, Bian, Qijing, Campuzano-Jost, Pedro, Cross, Eben S, Day, Douglas A, de Sá, Suzane S, Guenther, Alex B, Hansel, Armin, Hunter, James F, Jud, Werner, Karl, Thomas, Kim, Saewung, Kroll, Jesse H, Park, Jeong-Hoo, Peng, Zhe, Seco, Roger, Smith, James N, Jimenez, Jose L, Pierce, Jeffrey R

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The ATLAS Simulation Infrastructure by Abdesselam, A., Alviggi, M. G., Banfi, D., Bell, W. H., Bianchi, R. M., Bohm, J., Boldea, V., Borjanovic, I., Braem, A., Branchini, P., Brelier, B., Bruni, A., Bunse, M., Caballero, J., Cerrito, L., Conta, C., Dam, M., Darlea, G. L., De Pedis, D., Dehchar, M., Del Peso, J., Deng, J., Diaz, M. A., do Vale, M. A. B., Elles, S., Epp, B., Ferencei, J., Fiedler, F., Filthaut, F., Gaudio, G., Giakoumopoulou, V., Gjelsten, B. K., Glitza, K. W., Gosselink, M., Gray, H. M., Gupta, A., Hakobyan, H., Hayward, H. S., Hertenberger, R., Johansen, M., Kantserov, V. A., Kataoka, M., Klimentov, A., Koll, J., Kowalski, H., Lacasta, C., Lankford, A. J., Laplace, S., Le Vine, M., Liberti, B., Lockwitz, S., Lytken, E., Macana Goia, J. A., Mameghani, R., Mamuzic, J., McCubbin, N. A., McGlone, H., Moore, R. W., Nelson, T. K., Nicquevert, B., Nisius, R., Oren, Y., Ouraou, A., Owen, M., Panikashvili, N., Perez Codina, E., Petit, E., Rammes, M., Redlinger, G., Romanov, V. M., Rosenbaum, G. A., Rozanov, A., Ruan, X., Schacht, P., Serin, L., Simak, V., Skovpen, K., Slavicek, T., Soffer, A., Spousta, M., Ströhmer, R., Taylor, G. N., Topfel, C., Torró Pastor, E., Uchida, K., Vankov, P., Villa, M., Voss, R., Vrba, V., Vuillermet, R., Wagner, P., Weiser, C., Wellenstein, H., Wendler, S., Whittington, D., Wicek, F., Wielers, M., Wright, C., Yang, Z., Zanello, L.

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Search for direct third-generation squark pair production in final states with missing transverse momentum and two b-jets in s√= 8 TeV pp collisions with the ATLAS detector by Onofre, A., Castro, Nuno Filipe Silva Fernandes, ATLAS Collaboration

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Measurement of the centrality dependence of J/ψ yields and observation of Z production in lead–lead collisions with the ATLAS detector at the LHC by Abreu, H., Ahsan, M., Aielli, G., Amako, K., Austin, N., Bachas, K., Bain, T., Baker, M.D., Barak, L., Barklow, T., Bernat, P., Buttinger, W., Castro, N.F., Cheplakov, A., Cheu, E., Childers, J.T., Chromek-Burckhart, D., Clifft, R.W., Côté, D., Degenhardt, J., Düren, M., Fabbri, L., Fanti, M., Fedin, O.L., Feligioni, L., Gagliardi, G., Gauthier, L., George, S., Glasman, C., Gollub, N.P., Gomes, A., Gouighri, M., Goulette, M.P., Goussiou, A.G., Graziani, E., Gutierrez, P., Gutzwiller, O., Gwenlan, C., Haefner, P., Hara, K., Harrington, R.D., Homma, Y., Hsu, S.-C., Huffman, T.B., Ikeno, M., Jen-La Plante, I., Kama, S., Ketterer, C., Klaiber-Lodewigs, J., Kondo, T., Kummer, C., La Rosa, A., Lacker, H., Lari, T., Lee, H., Leggett, C., Leite, M.A.L., Lenzi, B., Levin, D., Li, H., Lopez Mateos, D., Lutz, G., Macina, D., Malecki, Pa, Mashimo, T., Masubuchi, T., Maxfield, S.J., Mora Herrera, C., Norton, P.R., Nugent, I.M., O'Neil, D.C., Ohska, T.K., Olszowska, J., Panitkin, S., Pralavorio, P., Price, D., Ragusa, F., Rensch, B., Schmitz, M., Skvorodnev, N., Snyder, S., Spurlock, B., Stroynowski, R., Susinno, G., Taiblum, N., Tompkins, L., Troncon, C., Viel, S., Virzi, J., Vlasak, M., Wagner, W., Wakabayashi, J., Wang, R., Wenig, S., Wu, X., Wunstorf, R., Xaplanteris, L., Zhan, Z., Zhang, Z., Zobernig, G.

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Measurement of top quark polarization in top-antitop events from proton-proton collisions at √s=7  TeV using the ATLAS detector by Aad, G, Abajyan, T, Abbott, B, Abdallah, J, Abdel Khalek, S, Abdinov, O, Aben, R, Abi, B, Abolins, M, AbouZeid, O S, Abramowicz, H, Abreu, H, Abulaiti, Y, Acharya, B S, Adamczyk, L, Adams, D L, Addy, T N, Adelman, J, Adomeit, S, Adye, T, Aefsky, S, Agatonovic-Jovin, T, Aguilar-Saavedra, J A, Agustoni, M, Ahlen, S P, Ahmad, A, Ahsan, M, Aielli, G, Åkesson, T P A, Akimoto, G, Akimov, A V, Alam, M A, Albert, J, Albrand, S, Alconada Verzini, M J, Aleksa, M, Aleksandrov, I N, Alessandria, F, Alexa, C, Alexander, G, Alexandre, G, Alexopoulos, T, Alhroob, M, Aliev, M, Alimonti, G, Alio, L, Alison, J, Allbrooke, B M M, Allison, L J, Allport, P P, Allwood-Spiers, S E, Almond, J, Aloisio, A, Alon, R, Alonso, A, Alonso, F, Altheimer, A, Alvarez Gonzalez, B, Alviggi, M G, Amako, K, Amaral Coutinho, Y, Amelung, C, Ammosov, V V, Amor Dos Santos, S P, Amorim, A, Amoroso, S, Amram, N, Anastopoulos, C, Ancu, L S, Andari, N, Andeen, T, Anders, C F, Anders, G, Anderson, K J, Andreazza, A, Andrei, V, Anduaga, X S, Angelidakis, S, Anger, P, Angerami, A, Anghinolfi, F, Anisenkov, A V, Anjos, N, Annovi, A, Antonaki, A, Antonelli, M, Antonov, A, Antos, J, Anulli, F, Aoki, M, Aperio Bella, L, Apolle, R, Arabidze, G, Aracena, I, Arai, Y, Arce, A T H, Arfaoui, S, Arguin, J-F, Argyropoulos, S, Arik, E

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Search for New Particles in Two-Jet Final States in 7 TeV Proton-Proton Collisions with the ATLAS Detector at the LHC by Onofre, A., Castro, Nuno Filipe Silva Fernandes, ATLAS Collaboration

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Measurement of the top quark pair production charge asymmetry in proton-proton collisions at [SQRT]s = 7 TeV using the ATLAS detector by Åkesson, T P, A, Alvarez Gonzalez, B, Amor Dos Santos, S P, Baranov, S P, Bentvelsen, S, Berger, N, Bortfeldt, J, Bressler, S, Buda, S I, Bunse, M, Burke, S, Calkins, R, Chilingarov, A, Chiodini, G, Cindro, V, Costanzo, D, Crescioli, F, Crosetti, G, Dobson, E, Dohmae, T, Doria, A, Ducu, O A, Ernst, M, Evans, H, Fabbri, L, Fernando, W, Giovannini, P, Grossi, G C, Hanke, P, Hellman, S, Hernández Jiménez, Y, Hsu, P J, Jen-la Plante, I, Kagan, H, Kirk, J, Klok, P F, Korolkov, I, Kurumida, R, Kuwertz, E S, Kwee, R, Lavrijsen, W, Lefebvre, M, Linde, F, Lipniacka, A, Loevschall-jensen, A E, Long, J D, Lukas, W, Lundberg, J, Maeno, M, Manousakis-katsikakis, A, Masik, J, Mc Goldrick, G, Menke, S, Moles-valls, R, Monnier, E, Morettini, P, Ottersbach, J P, Pasqualucci, E, Passeri, A, Patel, N D, Pedraza Lopez, S, Plucinski, P, Purohit, M, Quayle, W B, Rembser, C, Roda, C, Rolli, S, Rusakovich, N A, Sartisohn, G, Scannicchio, D A, Simmons, B, Simoniello, R, Smirnova, O, Snyder, S, Soh, D A, Spreitzer, T, Starovoitov, P, Stoebe, M, Su, D, Sutton, M R, Tan, K G, Tanaka, J, Thoma, S, Tibbetts, M J, Tisserant, S, Torres, H, Uhlenbrock, M, Vassilakopoulos, V I, Vetterli, M C, Wakabayashi, J, Wang, J, White, S, Wicke, D, Williams, S, Xella, S, Yoshihara, K, Yuan, L, Zimmermann, C, Zitoun, R, Zobernig, G

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Search for stable hadronising squarks and gluinos with the ATLAS experiment at the LHC by Aad, G., Aderholz, M., Adye, T., Baker, O.K., Bell, W.H., Bensinger, J.R., Bindi, M., Bitenc, U., Boehler, M., Bouhova-Thacker, E.V., Bousson, N., Brubaker, E., Budagov, I.A., Bunse, M., Capriotti, D., Cardarelli, R., Carter, A.A., Casadei, D., Cazzato, A., Chen, S., Christidi, I.A., Cwetanski, P., Dedovich, D.V., Dolejsi, J., Felzmann, C.U., Formica, A., Gallas, M.V., Gilbert, L.M., Gillberg, D., Golling, T., Gornicki, E., Gray, J.A., Hasegawa, S., Johansen, M., Kabachenko, V.V., Katzy, J., King, R.S.B., Knue, A., Ko, B.R., Koffas, T., Kotov, S., La Rosa, A., Larner, A., Le Dortz, O., Liu, D., Loken, J., Maio, A., Malyshev, V., Marx, M., Mazzoni, E., Mclaughlan, T., Meade, A., Mendoza Navas, L., Miralles Verge, L., Muenstermann, D., Nanava, G., Niedercorn, F., Padilla Aranda, C., Paolone, V., Pastore, Fr, Pataraia, S., Petridou, C., Porter, R., Psoroulas, S., Read, A.L., Rodriguez Garcia, Y., Romaniouk, A., Rossi, E., Rothberg, J., Sampsonidis, D., Savinov, V., Schmitt, C., Schumacher, M., Sevior, M.E., Shabalina, E., Shao, Q.T., Sloan, T.J., Smakhtin, V., Smirnova, L.N., Snesarev, A.A., Stugu, B., Soh, D.A., Sushkov, S., Sykora, T., Tafirout, R., Teng, P.K., Todorova-Nova, S., Tompkins, L., Ukegawa, F., Urrejola, P., Vannucci, F., Veneziano, S., Vincter, M.G., Viret, S., Vlachos, S., Weiser, C., Wenaus, T., Whitaker, S.P., Ye, J., Zhang, J.

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Measurement of the top quark charge in pp collisions at s√= 7 TeV with the ATLAS detector by Onofre, A., Castro, Nuno Filipe Silva Fernandes, ATLAS Collaboration

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Search for Dark Matter in Events with Missing Transverse Momentum and a Higgs Boson Decaying to Two Photons in pp Collisions at sqrt[s]=8 TeV with the ATLAS Detector by Aad, G, Abbott, B, Abdallah, J, Abdinov, O, Aben, R, Abolins, M, AbouZeid, O S, Abramowicz, H, Abreu, H, Abreu, R, Abulaiti, Y, Acharya, B S, Adamczyk, L, Adams, D L, Adelman, J, Adomeit, S, Adye, T, Affolder, A A, Agatonovic-Jovin, T, Aguilar-Saavedra, J A, Ahlen, S P, Ahmadov, F, Aielli, G, Akerstedt, H, Åkesson, T P A, Akimoto, G, Akimov, A V, Alberghi, G L, Albert, J, Albrand, S, Alconada Verzini, M J, Aleksa, M, Aleksandrov, I N, Alexa, C, Alexander, G, Alexopoulos, T, Alhroob, M, Alimonti, G, Alio, L, Alison, J, Alkire, S P, Allbrooke, B M M, Allport, P P, Aloisio, A, Alonso, A, Alonso, F, Alpigiani, C, Altheimer, A, Alvarez Gonzalez, B, Álvarez Piqueras, D, Alviggi, M G, Amadio, B T, Amako, K, Amaral Coutinho, Y, Amelung, C, Amidei, D, Amor Dos Santos, S P, Amorim, A, Amoroso, S, Amram, N, Amundsen, G, Anastopoulos, C, Ancu, L S, Andari, N, Andeen, T, Anders, C F, Anders, G, Anders, J K, Anderson, K J, Andreazza, A, Andrei, V, Angelidakis, S, Angelozzi, I, Anger, P, Angerami, A, Anghinolfi, F, Anisenkov, A V, Anjos, N, Annovi, A, Antonelli, M, Antonov, A, Antos, J, Anulli, F, Aoki, M, Aperio Bella, L, Arabidze, G, Arai, Y, Araque, J P, Arce, A T H, Arduh, F A, Arguin, J-F, Argyropoulos, S, Arik, M, Armbruster, A J, Arnaez, O, Arnal, V, Arnold, H, Arratia, M, Arslan, O, Artamonov, A

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Search for New Phenomena in Dijet Angular Distributions in Proton-Proton Collisions at sqrt[s]=8 TeV Measured with the ATLAS Detector by Aad, G, Abbott, B, Abdallah, J, Abdinov, O, Aben, R, Abolins, M, AbouZeid, O S, Abramowicz, H, Abreu, H, Abreu, R, Abulaiti, Y, Acharya, B S, Adamczyk, L, Adams, D L, Adelman, J, Adomeit, S, Adye, T, Affolder, A A, Agatonovic-Jovin, T, Aguilar-Saavedra, J A, Ahlen, S P, Ahmadov, F, Aielli, G, Akerstedt, H, Åkesson, T P A, Akimoto, G, Akimov, A V, Alberghi, G L, Albert, J, Albrand, S, Alconada Verzini, M J, Aleksa, M, Aleksandrov, I N, Alexa, C, Alexander, G, Alexopoulos, T, Alhroob, M, Alimonti, G, Alio, L, Alison, J, Alkire, S P, Allbrooke, B M M, Allport, P P, Aloisio, A, Alonso, A, Alonso, F, Alpigiani, C, Altheimer, A, Alvarez Gonzalez, B, Álvarez Piqueras, D, Alviggi, M G, Amadio, B T, Amako, K, Amaral Coutinho, Y, Amelung, C, Amidei, D, Amor Dos Santos, S P, Amorim, A, Amoroso, S, Amram, N, Amundsen, G, Anastopoulos, C, Ancu, L S, Andari, N, Andeen, T, Anders, C F, Anders, G, Anders, J K, Anderson, K J, Andreazza, A, Andrei, V, Angelidakis, S, Angelozzi, I, Anger, P, Angerami, A, Anghinolfi, F, Anisenkov, A V, Anjos, N, Annovi, A, Antonelli, M, Antonov, A, Antos, J, Anulli, F, Aoki, M, Aperio Bella, L, Arabidze, G, Arai, Y, Araque, J P, Arce, A T H, Arduh, F A, Arguin, J-F, Argyropoulos, S, Arik, M, Armbruster, A J, Arnaez, O, Arnal, V, Arnold, H, Arratia, M, Arslan, O, Artamonov, A

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Commissioning of the ATLAS Muon Spectrometer with cosmic rays by Abdesselam, A., Alviggi, M. G., Dos Santos Pedrosa, F. Baltasar, Banfi, D., Bell, W. H., Bianchi, R. M., Bohm, J., Boldea, V., Borjanovic, I., Brelier, B., Bruni, A., Bunse, M., Caballero, J., Cerrito, L., Conta, C., Dam, M., Darlea, G. L., De Castro Faria Salgado, P. E., De Pedis, D., Dehchar, M., Del Peso, J., Deng, J., Diaz, M. A., do Vale, M. A. B., Elles, S., Epp, B., Ferencei, J., Fiedler, F., Filthaut, F., Gentile, S., Giovannini, P., Grafström, P., Gutzwiller, O., Hansl-Kozanecka, T., Hauser, R., Havranek, M., Hoeferkamp, M. R., Ilchenko, Y., Jez, P., Johansen, M., Juranek, V., Katsoufis, E., Keener, P. T., Khubua, J., Kiyamura, H., Kladiva, E., Kroha, H., Kuhl, T., Kurchaninov, L. L., Laforge, B., Lanza, A., Lee, H., Li, X., Liang, Z., Limosani, A., Liu, Y., Lovas, L., Malon, D., Malyshev, V., Mameghani, R., Manjavidze, I. D., Marzano, F., Möser, N., Mohrdieck-Möck, S., Nebot, E., Nevski, P., Nomachi, M., Oh, A., Owen, S., Panes, B., Panitkin, S., Pater, J. R., Peak, L. S., Phan, A., Pinfold, J. L., Redlinger, G., Richards, R. A., Rimoldi, A., Roe, S., Rossetti, V., Ryan, P., Schaile, D., Seidel, S. C., Siegert, F., Sloper, J., Spanò, F., Stanek, R. W., Sundermann, J. E., Tatarkhanov, M., Torrence, E., Tsiakiris, M., Veloso, F., Vermeulen, J. C., Vitells, O., Watson, M. F., Werthenbach, U., Yang, H., Zerwas, D., Zhu, Y., Zobernig, G.

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Evidence for electroweak production of W±W±jj in pp collisions at sqrt[s] = 8 TeV with the ATLAS detector by Aad, G, Abbott, B, Abdallah, J, Abdel Khalek, S, Abdinov, O, Aben, R, Abi, B, Abolins, M, AbouZeid, O S, Abramowicz, H, Abreu, H, Abreu, R, Abulaiti, Y, Acharya, B S, Adamczyk, L, Adams, D L, Adelman, J, Adomeit, S, Adye, T, Agatonovic-Jovin, T, Aguilar-Saavedra, J A, Agustoni, M, Ahlen, S P, Ahmadov, F, Aielli, G, Akerstedt, H, Åkesson, T P A, Akimoto, G, Akimov, A V, Alberghi, G L, Albert, J, Albrand, S, Alconada Verzini, M J, Aleksa, M, Aleksandrov, I N, Alexa, C, Alexander, G, Alexandre, G, Alexopoulos, T, Alhroob, M, Alimonti, G, Alio, L, Alison, J, Allbrooke, B M M, Allison, L J, Allport, P P, Almond, J, Aloisio, A, Alonso, A, Alonso, F, Alpigiani, C, Altheimer, A, Alvarez Gonzalez, B, Alviggi, M G, Amako, K, Amaral Coutinho, Y, Amelung, C, Amidei, D, Amor Dos Santos, S P, Amorim, A, Amoroso, S, Amram, N, Amundsen, G, Anastopoulos, C, Ancu, L S, Andari, N, Andeen, T, Anders, C F, Anders, G, Anderson, K J, Andreazza, A, Andrei, V, Anduaga, X S, Angelidakis, S, Angelozzi, I, Anger, P, Angerami, A, Anghinolfi, F, Anisenkov, A V, Anjos, N, Annovi, A, Antonaki, A, Antonelli, M, Antonov, A, Antos, J, Anulli, F, Aoki, M, Aperio Bella, L, Apolle, R, Arabidze, G, Aracena, I, Arai, Y, Araque, J P, Arce, A T H, Arguin, J-F, Argyropoulos, S, Arik, M, Armbruster, A J, Arnaez, O, Arnal, V

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Measurement of the cross-section of high transverse momentum vector bosons reconstructed as single jets and studies of jet substructure in pp collisions at = 7 TeV with the ATLAS d... by Agustoni, M, Argyropoulos, S, Assamagan, K, Azuma, Y, Backhaus, M, Bangert, A, Barbero, M, Bechtle, P, Beck, H P, Beltramello, O, Bernat, P, Bilokon, H, Black, K M, Boddy, C R, Boek, J, Boscherini, D, Branchini, P, Bruncko, D, Burckhart, H, Burke, S, Caloi, R, Campanelli, M, Garrido, M D M Capeans, Ceradini, F, Chalupkova, I, Colijn, A P, Conta, C, Cornelissen, T, Cristinziani, M, Demers, S, Derkaoui, J E, Dudarev, A, Yildiz, H Duran, Fabbri, L, Walls, F M Garay, Gee, C N P, Gemme, C, Gianotti, F, Gouighri, M, Grinstein, S, Gwenlan, C, Hauschild, M, Hertenberger, R, Hesketh, G G, Hoffmann, D, Huysduynen, L Hooft van, Hsu, S-C, Inamaru, Y, Jia, J, Jones, R W L, Kneringer, E, Kogan, L A, Korn, A, Kostyukhin, V V, Krstic, J, Krumnack, N, Kruse, M C, Lee, L, Lichard, P, Lounis, A, Ma ek, B, Maeno, T, Messina, A, Miyagawa, P S, Pan, Y B, Hernandez, D Paredes, Passeri, A, Perrino, R, Peshekhonov, V D, Pospelov, G E, Rammensee, M, Robinson, J E M, Romano, M, Salamon, A, Sánchez, J, Sandoval, T, Sarrazin, B, Schaile, D, Schune, Ph, Scifo, E, Severini, H, Shmeleva, A, Silverstein, D, Skovpen, K Yu, Spighi, R, Stewart, G A, Sutton, M R, Tanasijczuk, A J, Teng, P K, Tibbetts, M J, Tudorache, A, Varvell, K E, Vincter, M G, Vuillermet, R, Walder, J, Walkowiak, W, Wang, R, Wenig, S, Wildt, M A, Zieminska, D

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