Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows by Van Den Bossche, Tim, Kunath, Benoit J., Schallert, Kay, Schäpe, Stephanie S., Abraham, Paul E., Armengaud, Jean, Arntzen, Magnus Ø., Bassignani, Ariane, Benndorf, Dirk, Fuchs, Stephan, Giannone, Richard J., Griffin, Timothy J., Hagen, Live H., Halder, Rashi, Henry, Céline, Hettich, Robert L., Heyer, Robert, Jagtap, Pratik, Jehmlich, Nico, Jensen, Marlene, Juste, Catherine, Kleiner, Manuel, Langella, Olivier, Lehmann, Theresa, Leith, Emma, May, Patrick, Mesuere, Bart, Miotello, Guylaine, Peters, Samantha L., Pible, Olivier, Queiros, Pedro T., Reichl, Udo, Renard, Bernhard Y., Schiebenhoefer, Henning, Sczyrba, Alexander, Tanca, Alessandro, Trappe, Kathrin, Trezzi, Jean-Pierre, Uzzau, Sergio, Verschaffelt, Pieter, von Bergen, Martin, Wilmes, Paul, Wolf, Maximilian, Martens, Lennart, Muth, Thilo

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The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes by Van Den Bossche, Tim, Arntzen, Magnus Ø, Becher, Dörte, Benndorf, Dirk, Eijsink, Vincent G H, Henry, Céline, Jagtap, Pratik D, Jehmlich, Nico, Juste, Catherine, Kunath, Benoit J, Mesuere, Bart, Muth, Thilo, Pope, Phillip B, Seifert, Jana, Tanca, Alessandro, Uzzau, Sergio, Wilmes, Paul, Hettich, Robert L, Armengaud, Jean

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The oral–gut microbiome axis in health and disease by Kunath, Benoit J., De Rudder, Charlotte, Laczny, Cedric C., Letellier, Elisabeth, Wilmes, Paul

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ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework [version 2; peer review: 2 approved] by Mehta, Subina, Crane, Marie, Leith, Emma, Batut, Bérénice, Hiltemann, Saskia, Arntzen, Magnus Ø, Kunath, Benoit J, Pope, Phillip B, Delogu, Francesco, Sajulga, Ray, Kumar, Praveen, Johnson, James E, Griffin, Timothy J, Jagtap, Pratik D

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Rumen metaproteomics: Closer to linking rumen microbial function to animal productivity traits by Andersen, Thea Os, Kunath, Benoit J., Hagen, Live H., Arntzen, Magnus Ø., Pope, Phillip B.

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Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance by Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul

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Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance by Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul

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From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus by Kunath, Benoit J., Delogu, Francesco, Naas, Adrian E., Arntzen, Magnus Ø., Eijsink, Vincent G. H., Henrissat, Bernard, Hvidsten, Torgeir R., Pope, Phillip B.

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ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework [version 1; peer review: 1 approved with reservations] by Mehta, Subina, Crane, Marie, Leith, Emma, Batut, Bérénice, Hiltemann, Saskia, Arntzen, Magnus Ø, Kunath, Benoit J, Delogu, Francesco, Sajulga, Ray, Kumar, Praveen, Johnson, James E, Griffin, Timothy J, Jagtap, Pratik D

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Establishing the ELIXIR Microbiome Community [version 1; peer review: awaiting peer review] by Finn, Robert D., Balech, Bachir, Burgin, Josephine, Chua, Physilia, Corre, Erwan, Cox, Cymon J., Donati, Claudio, dos Santos, Vitor Martins, Fosso, Bruno, Hancock, John, Heil, Katharina F., Ishaque, Naveed, Kale, Varsha, Kunath, Benoit J., Médigue, Claudine, Pafilis, Evangelos, Pesole, Graziano, Richardson, Lorna, Santamaria, Monica, Van Den Bossche, Tim, Vizcaíno, Juan Antonio, Zafeiropoulos, Haris, Willassen, Nils P., Pelletier, Eric, Batut, Bérénice

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Establishing the ELIXIR Microbiome Community by Finn, Robert D, Balech, Bachir, Burgin, Josephine, Chua, Physilia, Corre, Erwan, Cox, Cymon J, Donati, Claudio, dos Santos, Vitor Martins, Fosso, Bruno, Hancock, John, Heil, Katharina F, Ishaque, Naveed, Kale, Varsha, Kunath, Benoit J, Médigue, Claudine, Pafilis, Evangelos, Pesole, Graziano, Richardson, Lorna, Santamaria, Monica, van den Bossche, Tim, Vizcaíno, Juan Antonio, Zafeiropoulos, Haris, Willassen, Nils P, Pelletier, Eric, Batut, Bérénice

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Integrative meta-omics in Galaxy and beyond by Schiml, Valerie C, Delogu, Francesco, Kumar, Praveen, Kunath, Benoit, Batut, Bérénice, Mehta, Subina, Johnson, James E, Grüning, Björn, Pope, Phillip B, Jagtap, Pratik D, Griffin, Timothy J, Arntzen, Magnus Ø

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