Integrated Genomics Reveals Convergent Transcriptomic Networks Underlying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis by Kusko, Rebecca L, Brothers, 2nd, John F, Tedrow, John, Pandit, Kusum, Huleihel, Luai, Perdomo, Catalina, Liu, Gang, Juan-Guardela, Brenda, Kass, Daniel, Zhang, Sherry, Lenburg, Marc, Martinez, Fernando, Quackenbush, John, Sciurba, Frank, Limper, Andrew, Geraci, Mark, Yang, Ivana, Schwartz, David A, Beane, Jennifer, Spira, Avrum, Kaminski, Naftali

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Premature expression of a muscle fibrosis axis in chronic HIV infection by Kusko, Rebecca L, Banerjee, Camellia, Long, Kimberly K, Darcy, Ariana, Otis, Jeffrey, Sebastiani, Paola, Melov, Simon, Tarnopolsky, Mark, Bhasin, Shalender, Montano, Monty

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Abstract 789: Leveraging transcriptomic and genomic data to better select models for preclinical oncology therapeutic development to identify cell lines most similar to patient tum... by Cha, Yoonjeong, Labradorf, Adam, Perez-Rogers, Joseph, Haas, Brian, Lysaght, Andrew, Weiner, Brian, Towfic, Fadi, Fowler, Kevin, Zeskind, Benjamin, Kolitz, Sarah, Vardarajan, Badri, Artyomov, Maxim, Kusko, Rebecca L.

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Abstract 1509: Cachexia: Leveraging transcriptomics to identify potential therapeutics by Ung, Matthew, Fowler, Kevin D., Funt, Jason M., Escalante-Chong, Renan, Koytiger, Gregory, Kolitz, Sarah, Kusko, Rebecca L., Zeskind, Benjamin

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Abstract A1-66: Leveraging Gene Expression in the Bronchial Airway to Develop a Nasal Biomarker for Early Detection of Lung Cancer by Perez-Rogers, Joseph F., Gerrein, Joseph, Anderlind, Christina, Kusko, Rebecca L., Campbell, Joshua D., Wang, Teresa W., Porta, Kate, Whitney, Duncan, Spira, Avrum, Lenburg, Marc

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Abstract B1-50: Leveraging gene expression in the bronchial airway to develop a nasal biomarker for early detection of lung cancer by Perez-Rogers, Joseph F., Gerrein, Joseph, Anderlind, Christina, Kusko, Rebecca L., Campbell, Joshua D., Wang, Teresa, Porta, Kate, Whitney, Duncan, Spira, Avrum, Lenburg, Marc

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Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq by Kusko, Rebecca L, Brothers, John, Liu, Gang, Luo, Lingqi, Guardela, Brenda Juan, Tedrow, John, Aleksyev, Yuriy, Yang, Ivana V, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Lenburg, Marc, Schwartz, David A, Beane, Jennifer, Kaminski, Naftali, Spira, Avrum

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Transparency and reproducibility in artificial intelligence by Haibe-Kains, Benjamin, Adam, George Alexandru, Hosny, Ahmed, Khodakarami, Farnoosh, Waldron, Levi, Wang, Bo, McIntosh, Chris, Goldenberg, Anna, Kundaje, Anshul, Greene, Casey S., Broderick, Tamara, Hoffman, Michael M., Leek, Jeffrey T., Korthauer, Keegan, Huber, Wolfgang, Brazma, Alvis, Pineau, Joelle, Tibshirani, Robert, Hastie, Trevor, Ioannidis, John P. A., Quackenbush, John, Aerts, Hugo J. W. L.

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Leveraging an NQO1 Bioactivatable Drug for Tumor-Selective Use of Poly(ADP-ribose) Polymerase Inhibitors by Huang, Xiumei, Motea, Edward A., Moore, Zachary R., Yao, Jun, Dong, Ying, Chakrabarti, Gaurab, Kilgore, Jessica A., Silvers, Molly A., Patidar, Praveen L., Cholka, Agnieszka, Fattah, Farjana, Cha, Yoonjeong, Anderson, Glenda G., Kusko, Rebecca, Peyton, Michael, Yan, Jingsheng, Xie, Xian-Jin, Sarode, Venetia, Williams, Noelle S., Minna, John D., Beg, Muhammad, Gerber, David E., Bey, Erik A., Boothman, David A.

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Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions by Gong, Binsheng, Li, Dan, Kusko, Rebecca, Novoradovskaya, Natalia, Zhang, Yifan, Wang, Shangzi, Pabón-Peña, Carlos, Zhang, Zhihong, Lai, Kevin, Cai, Wanshi, LoCoco, Jennifer S, Lader, Eric, Richmond, Todd A, Mittal, Vinay K, Liu, Liang-Chun, Johann, Jr, Donald J, Willey, James C, Bushel, Pierre R, Yu, Ying, Xu, Chang, Chen, Guangchun, Burgess, Daniel, Cawley, Simon, Giorda, Kristina, Haseley, Nathan, Qiu, Fujun, Wilkins, Katherine, Arib, Hanane, Attwooll, Claire, Babson, Kevin, Bao, Longlong, Bao, Wenjun, Lucas, Anne Bergstrom, Best, Hunter, Bhandari, Ambica, Bisgin, Halil, Blackburn, James, Blomquist, Thomas M, Boardman, Lisa, Burgher, Blake, Butler, Daniel J, Chang, Chia-Jung, Chaubey, Alka, Chen, Tao, Chierici, Marco, Chin, Christopher R, Close, Devin, Conroy, Jeffrey, Cooley Coleman, Jessica, Craig, Daniel J, Crawford, Erin, Del Pozo, Angela, Deveson, Ira W, Duncan, Daniel, Eterovic, Agda Karina, Fan, Xiaohui, Foox, Jonathan, Furlanello, Cesare, Ghosal, Abhisek, Glenn, Sean, Guan, Meijian, Haag, Christine, Hang, Xinyi, Happe, Scott, Hennigan, Brittany, Hipp, Jennifer, Hong, Huixiao, Horvath, Kyle, Hu, Jianhong, Hung, Li-Yuan, Jarosz, Mirna, Kerkhof, Jennifer, Kipp, Benjamin, Kreil, David Philip, Łabaj, Paweł, Lapunzina, Pablo, Li, Peng, Li, Quan-Zhen, Li, Weihua, Li, Zhiguang, Liang, Yu, Liu, Shaoqing, Liu, Zhichao, Ma, Charles, Marella, Narasimha, Martín-Arenas, Rubén, Megherbi, Dalila B, Meng, Qingchang, Mieczkowski, Piotr A, Morrison, Tom, Muzny, Donna, Ning, Baitang, Parsons, Barbara L, Paweletz, Cloud P, Pirooznia, Mehdi, Qu, Wubin, Raymond, Amelia, Rindler, Paul, Ringler, Rebecca, Sadikovic, Bekim

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Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples by Zhang, Yifan, Blomquist, Thomas M, Kusko, Rebecca, Stetson, Daniel, Zhang, Zhihong, Yin, Lihui, Sebra, Robert, Gong, Binsheng, Lococo, Jennifer S, Mittal, Vinay K, Novoradovskaya, Natalia, Yeo, Ji-Youn, Dominiak, Nicole, Hipp, Jennifer, Raymond, Amelia, Qiu, Fujun, Arib, Hanane, Smith, Melissa L, Brock, Jay E, Farkas, Daniel H, Craig, Daniel J, Crawford, Erin L, Li, Dan, Morrison, Tom, Tom, Nikola, Xiao, Wenzhong, Yang, Mary, Mason, Christopher E, Richmond, Todd A, Jones, Wendell, Johann, Jr, Donald J, Shi, Leming, Tong, Weida, Willey, James C, Xu, Joshua

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PGE2-driven expression of c-Myc and oncomiR-17-92 contributes to apoptosis resistance in NSCLC by Krysan, Kostyantyn, Kusko, Rebecca, Grogan, Tristan, O'Hearn, James, Reckamp, Karen L, Walser, Tonya C, Garon, Edward B, Lenburg, Marc E, Sharma, Sherven, Spira, Avrum E, Elashoff, David, Dubinett, Steven M

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A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency by Jones, Wendell, Gong, Binsheng, Novoradovskaya, Natalia, Li, Dan, Kusko, Rebecca, Richmond, Todd A, Johann, Jr, Donald J, Bisgin, Halil, Sahraeian, Sayed Mohammad Ebrahim, Bushel, Pierre R, Pirooznia, Mehdi, Wilkins, Katherine, Chierici, Marco, Bao, Wenjun, Basehore, Lee Scott, Lucas, Anne Bergstrom, Burgess, Daniel, Butler, Daniel J, Cawley, Simon, Chang, Chia-Jung, Chen, Guangchun, Chen, Tao, Chen, Yun-Ching, Craig, Daniel J, Del Pozo, Angela, Foox, Jonathan, Francescatto, Margherita, Fu, Yutao, Furlanello, Cesare, Giorda, Kristina, Grist, Kira P, Guan, Meijian, Hao, Yingyi, Happe, Scott, Hariani, Gunjan, Haseley, Nathan, Jasper, Jeff, Jurman, Giuseppe, Kreil, David Philip, Łabaj, Paweł, Lai, Kevin, Li, Jianying, Li, Quan-Zhen, Li, Yulong, Li, Zhiguang, Liu, Zhichao, López, Mario Solís, Miclaus, Kelci, Miller, Raymond, Mittal, Vinay K, Mohiyuddin, Marghoob, Pabón-Peña, Carlos, Parsons, Barbara L, Qiu, Fujun, Scherer, Andreas, Shi, Tieliu, Stiegelmeyer, Suzy, Suo, Chen, Tom, Nikola, Wang, Dong, Wen, Zhining, Wu, Leihong, Xiao, Wenzhong, Xu, Chang, Yu, Ying, Zhang, Jiyang, Zhang, Yifan, Zhang, Zhihong, Zheng, Yuanting, Mason, Christopher E, Willey, James C, Tong, Weida, Shi, Leming, Xu, Joshua

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Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA by Willey, James C., Morrison, Tom B., Austermiller, Bradley, Crawford, Erin L., Craig, Daniel J., Blomquist, Thomas M., Jones, Wendell D., Wali, Aminah, Lococo, Jennifer S., Haseley, Nathan, Richmond, Todd A., Novoradovskaya, Natalia, Kusko, Rebecca, Chen, Guangchun, Li, Quan-Zhen, Johann, Donald J., Deveson, Ira W., Mercer, Timothy R., Wu, Leihong, Xu, Joshua

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