Deep learning of the tissue-regulated splicing code by Leung, Michael K K, Xiong, Hui Yuan, Lee, Leo J, Frey, Brendan J

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The Evolutionary Landscape of Alternative Splicing in Vertebrate Species by Barbosa-Morais, Nuno L., Irimia, Manuel, Pan, Qun, Xiong, Hui Y., Gueroussov, Serge, Lee, Leo J., Slobodeniuc, Valentina, Kutter, Claudia, Watt, Stephen, Çolak, Recep, Kim, TaeHyung, Misquitta-Ali, Christine M., Wilson, Michael D., Kim, Philip M., Odom, Duncan T., Frey, Brendan J., Blencowe, Benjamin J.

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Genome-wide analysis of alternative splicing in Caenorhabditis elegans by Ramani, Arun K, Calarco, John A, Pan, Qun, Mavandadi, Sepand, Wang, Ying, Nelson, Andrew C, Lee, Leo J, Morris, Quaid, Blencowe, Benjamin J, Zhen, Mei, Fraser, Andrew G

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IntroSpect: Motif-Guided Immunopeptidome Database Building Tool to Improve the Sensitivity of HLA I Binding Peptide Identification by Mass Spectrometry by Zhang, Le, Liu, Geng, Hou, Guixue, Xiang, Haitao, Zhang, Xi, Huang, Ying, Zhang, Xiuqing, Li, Bo, Lee, Leo J

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A graph neural network approach for molecule carcinogenicity prediction by Fradkin, Philip, Young, Adamo, Atanackovic, Lazar, Frey, Brendan, Lee, Leo J, Wang, Bo

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Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data by Kakaradov, Boyko, Xiong, Hui Yuan, Lee, Leo J, Jojic, Nebojsa, Frey, Brendan J

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The human splicing code reveals new insights into the genetic determinants of disease by Xiong, Hui Y., Alipanahi, Babak, Lee, Leo J., Bretschneider, Hannes, Merico, Daniele, Yuen, Ryan K. C., Hua, Yimin, Gueroussov, Serge, Najafabadi, Hamed S., Hughes, Timothy R., Morris, Quaid, Barash, Yoseph, Krainer, Adrian R., Jojic, Nebojsa, Scherer, Stephen W., Blencowe, Benjamin J., Frey, Brendan J.

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Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes by Blencowe, Benjamin J, Ahmad, Sidrah, Lee, Leo J

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The co-stimulation of anti-CD28 and IL-2 enhances the sensitivity of ELISPOT assays for detection of neoantigen-specific T cells in PBMC by Tang, Yunxia, Zhu, Linnan, Xu, Qumiao, Zhang, Xiuqing, Li, Bo, Lee, Leo J.

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Transcriptional profiling of endocrine cerebro-osteodysplasia using microarray and next-generation sequencing by Lahiry, Piya, Lee, Leo J, Frey, Brendan J, Rupar, C Anthony, Siu, Victoria M, Blencowe, Benjamin J, Hegele, Robert A

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ADAR1-Dependent RNA Editing Promotes MET and iPSC Reprogramming by Alleviating ER Stress by Guallar, Diana, Fuentes-Iglesias, Alejandro, Souto, Yara, Ameneiro, Cristina, Freire-Agulleiro, Oscar, Pardavila, Jose Angel, Escudero, Adriana, Garcia-Outeiral, Vera, Moreira, Tiago, Saenz, Carmen, Xiong, Heng, Liu, Dongbing, Xiao, Shidi, Hou, Yong, Wu, Kui, Torrecilla, Daniel, Hartner, Jochen C., Blanco, Miguel G., Lee, Leo J., López, Miguel, Walkley, Carl R., Wang, Jianlong, Fidalgo, Miguel

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AVISPA: a web tool for the prediction and analysis of alternative splicing by Barash, Yoseph, Vaquero-Garcia, Jorge, González-Vallinas, Juan, Xiong, Hui Yuan, Gao, Weijun, Lee, Leo J, Frey, Brendan J

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Characterization of RNA editome in primary and metastatic lung adenocarcinomas by Peng, Lihua, Lee, Leo J, Xiong, Heng, Su, Hong, Rao, Junhua, Xiao, Dakai, He, Jianxing, Wu, Kui, Liu, Dongbing

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RED-ML: a novel, effective RNA editing detection method based on machine learning by Xiong, Heng, Liu, Dongbing, Li, Qiye, Lei, Mengyue, Xu, Liqin, Wu, Liang, Wang, Zongji, Ren, Shancheng, Li, Wangsheng, Xia, Min, Lu, Lihua, Lu, Haorong, Hou, Yong, Zhu, Shida, Liu, Xin, Sun, Yinghao, Wang, Jian, Yang, Huanming, Wu, Kui, Xu, Xun, Lee, Leo J.

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Adaptive Kalman Filtering and Smoothing for Tracking Vocal Tract Resonances Using a Continuous-Valued Hidden Dynamic Model by Li Deng, Lee, L.J., Attias, H., Acero, A.

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Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction by Wells, Daniel K., Dang, Kristen K., Sheehan, Kathleen C.F., Campbell, Katie M., Lamb, Andrew, Ward, Jeffrey P., Sidney, John, Blazquez, Ana B., Rech, Andrew J., Zaretsky, Jesse M., Ng, Alphonsus H.C., Yu, Thomas V., Manning, Patrice, Steiner, Gabriela M., Khan, Aly A., Lugade, Amit, Frentzen, Angela A. Elizabeth, Tadmor, Arbel D., Sasson, Ariella S., Rao, Arjun A., Pei, Baikang, Schrörs, Barbara, Peters, Bjoern, Li, Bo, Stevenson, Brian J., Iseli, Christian, Morehouse, Christopher A., Melief, Cornelis J.M., Puig-Saus, Cristina, van Beek, Daphne, Balli, David, Gfeller, David, Haussler, David, Jäger, Dirk, Cortes, Eduardo, Esaulova, Ekaterina, Sherafat, Elham, Bartha, Gabor, Liu, Geng, Coukos, George, Xenarios, Ioannis, Mandoiu, Ion, Kooi, Irsan, Kessler, Jan H., Greenbaum, Jason A., Perera, Jason F., Harris, Jason, Hundal, Jasreet, Shelton, Jennifer M., Wang, Jianmin, Wang, Jiaqian, Szustakowski, Joseph, Kodysh, Julia, Forman, Juliet, Wei, Lei, Lee, Leo J., Slagter, Maarten, Mueller, Markus, Lower, Martin, Vormehr, Mathias, Artyomov, Maxim N., Yang, Naibo, Raicevic, Nevena M. Ilic, Guex, Nicolas, Robine, Nicolas, Halama, Niels, Skundric, Nikola M., Milicevic, Ognjen S., Gellert, Pascal, Jongeneel, Patrick, Charoentong, Pornpimol, Tanden, Prateek, Hu, Qiang, Gupta, Ravi, Petit, Robert, Ziman, Robert, Hilker, Rolf, Shukla, Sachet A., Boyle, Sean M., Qiu, Si, Salama, Sofie, Liu, Song, Wu, Song, Ketelaars, Steven L.C., Jhunjhunwala, Suchit, Shcheglova, Tatiana, Schuepbach, Thierry, Creasy, Todd H., Kovacevic, Vladimir B., Krebber, Willem-Jan, Sebastian, Yinong, Yalcin, Zeynep Kosaloglu, Selinsky, Cheryl, Ribas, Antoni, Hellmann, Matthew D., Hacohen, Nir, Sette, Alessandro, Heath, James R., Schreiber, Robert D., Kvistborg, Pia

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How Many New Genes Are There? by Lee, Leo J., Hughes, Timothy R., Frey, Brendan J., Carninci, Piero, Gough, Julian, Kasukawa, Takeya, Hayashizaki, Yoshihide

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Abstract 3383: EPIC: MHC-I epitope prediction integrating mass spectrometry derived motifs and tissue-specific expression profiles by Hu, Weipeng, Qiu, Si, Li, Youping, Liu, Geng, Zhang, Xiuqing, Lee, Leo J

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Effects of Cloud Parameterization on Radiation and Precipitation: A Comparison between Single-Moment Microphysics and Double-Moment Microphysics by Lee, Seoung Soo, Donner, Leo J.

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Orthrus: Towards Evolutionary and Functional RNA Foundation Models by Fradkin, Philip, Shi, Ruian, Isaev, Keren, Frey, Brendan J, Morris, Quaid, Lee, Leo J, Wang, Bo

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