Proteogenomic and metabolomic characterization of human glioblastoma by Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Rykunov, Dmitry, Cornwell, MacIntosh, Petralia, Francesca, Wu, Yige, Reva, Boris, Kawaler, Emily, Olsen, Lindsey K., Liang, Wen-Wei, Wendl, Michael C., Caravan, Wagma, Ji, Jiayi, Petyuk, Vladislav A., Moon, Jamie, Moore, Ronald J., Krek, Azra, Zhu, Houxiang, McMichael, Joshua F., Lu, Shuangjia, Baral, Jessika, Yao, Lijun, Zink, Erika, Bloodsworth, Kent J., Satpathy, Shankha, Boca, Simina M., Chen, Feng, Ketchum, Karen A., Boja, Emily S., Hiltke, Tara, Mani, D.R., Chen, Xi S., Li, Qing Kay, Kim, Albert H., Fenyö, David, Mesri, Mehdi, Resnick, Adam C., Wang, Pei, Chheda, Milan G., Barnholtz-Sloan, Jill S., Rodland, Karin D., Liu, Tao, Ding, Li, Bauer, Thomas, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna P., Carr, Steven A., Chan, Daniel W., Charamut, Alyssa, Chesla, David, Chowdhury, Shrabanti, Cieślik, Marcin P., Culpepper, Houston, Demir, Emek, Dhir, Rajiv, Duffy, Elizabeth, Edwards, Robert, Gabriel, Stacey, Gabrovski, Nikolay, Garofano, Luciano, Gillette, Michael A., Hannick, Linda I., Hindenach, Barbara, Hoadley, Katherine A., Hostetter, Galen, Huang, Chen, Jaehnig, Eric, Ji, Nan, Jones, Corbin D., Kaspera, Wojciech, Lei, Jonathan, Li, Kai, Liu, Hongwei, Lubínski, Jan, Malc, Ewa, Malovannaya, Anna, McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Modugno, Francesmary, Ozbek, Umut, Paulovich, Amanda G., Piehowski, Paul D., Polonskaya, Larisa, Pruetz, Barbara, Ramkissoon, Shakti, Riggins, Gregory, Stawicki, Jakub, Tabor, Dave, Tansil, Darlene, Traer, Elie, Vatanian, Negin, Webster, Alex, Wen, Bo, Whiteaker, Jeffrey R., Zhang, Liwei, Zhao, Grace

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Proteogenomic Characterization of Endometrial Carcinoma by Kawaler, Emily A., Cui Zhou, Daniel, Huang, Chen, Blumenberg, Lili, Karpova, Alla, Petyuk, Vladislav A., Wen, Bo, Li, Zhi, Cao, Song, Moon, Jamie, Shi, Zhiao, Cornwell, MacIntosh, Wyczalkowski, Matthew A., Chu, Rosalie K., Gao, Qingsong, Moore, Ronald J., Li, Kai, Zhao, Rui, Clauser, Karl, Maruvka, Yosef, Pico, Alexander R., Beecroft, Sean J.I., Adams, David W., Liao, Yuxing, Rykunov, Dmitry, Czekański, Andrzej, Jędryka, Marcin, Kinsinger, Christopher R., Mesri, Mehdi, Ellis, Matthew J., Thiagarajan, Mathangi, Noble, Michael, Wang, Pei, Anderson, Matthew L., Levine, Douglas A., Rodland, Karin D., Liu, Tao, Birger, Chet, Birrer, Michael J., Bocik, William E., Borate, Uma, Cai, Shuang, Carter, Sonya, Castro, Patricia, Chaikin, Michelle, Chen, Jin, Chesla, David, Chheda, Milan G., Culpepper, Houston, Demir, Emek, Dhir, Rajiv, Domagalski, Marcin J., Edwards, Robert, Elburn, Kim, Field, Jayson B., Gabriel, Stacey, Godwin, Andrew K., Grady, Pamela, Hariharan, Pushpa, Hoadley, Katherine A., Hostetter, Galen, Hu, Yingwei, Jaehnig, Eric, Jewell, Scott D., Ji, Jiayi, Jones, Corbin D., Karabon, Renee, Ketchum, Karen A., Krubit, Tanya, Leprevost, Felipe D., Lewis, Michael, Ma, Weiping, Madan, Rashna, Markey, Sanford P., McDermott, Jason, McGarvey, Peter B., Modugno, Francesmary, Montgomery, Rebecca, Piehowski, Paul, Polonskaya, Larisa, Qi, Liqun, Schadt, Eric E., Shi, Yan, Skelly, Tara, Stein, Stephen E., Tan, Donghui, Teo, Guo Ci, Thangudu, Ratna R., Valley, Dana R., Vernon, Michael, Wang, Ying, Webster, Alex, Westbrook, Thomas, Wheeler, David, Wilson, George D., Zelt, Robert, Zhang, Hui, Zhang, Yuping, Zhang, Zhen, Zhao, Grace

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Post-translational modifications reshape the antigenic landscape of the MHC I immunopeptidome in tumors by Kacen, Assaf, Javitt, Aaron, Kramer, Matthias P., Morgenstern, David, Tsaban, Tomer, Shmueli, Merav D., Teo, Guo Ci, da Veiga Leprevost, Felipe, Barnea, Eilon, Yu, Fengchao, Admon, Arie, Eisenbach, Lea, Samuels, Yardena, Schueler-Furman, Ora, Levin, Yishai, Nesvizhskii, Alexey I., Merbl, Yifat

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The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein by Popelka, Hana, Lahiri, Vikramjit, Hawkins, Wayne D, da Veiga Leprevost, Felipe, Nesvizhskii, Alexey I, Klionsky, Daniel J

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Proteogenomic data and resources for pan-cancer analysis by Dou, Yongchao, Da Veiga Leprevost, Felipe, Geffen, Yifat, Calinawan, Anna P., Aguet, François, Birger, Chet, Cao, Song, Chaudhary, Rekha, Cieslik, Marcin, Colaprico, Antonio, Zhou, Daniel Cui, Day, Corbin, Domagalski, Marcin J., Fenyö, David, Foltz, Steven M., Gonzalez-Robles, Tania, Gümüş, Zeynep H., Heiman, David, Hong, Runyu, Hu, Yingwei, Jaehnig, Eric J., Ji, Jiayi, Jiang, Wen, Ketchum, Karen A., Klein, Robert J., Liao, Yuxing, Lindgren, Caleb M., Ma, Weiping, Ma, Lei, MacCoss, Michael J., Martins Rodrigues, Fernanda, Nguyen, Ngoc, Oldroyd, Robert, Reva, Boris, Rudnick, Paul, Savage, Sara R., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Singhal, Deepak, Storrs, Erik, Thangudu, Ratna R., Thiagarajan, Mathangi, Wang, Liang-Bo, Wang, Joshua M., Wen, Bo, Wu, Yige, Wyczalkowski, Matthew A., Xin, Yi, Yao, Lijun, Zhang, Hui, Zhang, Qing, Getz, Gad, Ding, Li, Nesvizhskii, Alexey I., Robles, Ana I., Payne, Samuel H., Lazar, Alexander J., Paulovich, Amanda G., Iavarone, Antonio, Chinnaiyan, Arul M., Druker, Brian J., Kumar-Sinha, Chandan, Newton, Chelsea J., Smith, Richard D., Huntsman, Emily, Schadt, Eric E., An, Eunkyung, Petralia, Francesca, Cho, Hanbyul, Rodriguez, Henry, Zhang, Hui, Kolodziejczak, Iga, Johnson, Jared L., Bavarva, Jasmin, Tan, Jimin, Clauser, Karl R., Krug, Karsten, Cantley, Lewis C., Wiznerowicz, Maciej, Anurag, Meenakshi, Mesri, Mehdi, Gillette, Michael A., Birrer, Michael J., Ceccarelli, Michele, Dhanasekaran, Saravana M., Edwards, Nathan, Tignor, Nicole, Babur, Özgün, Pugliese, Pietro, Jewell, Scott D., Satpathy, Shankha, Chowdhury, Shrabanti, Schürer, Stephan, Carr, Steven A., Hiltke, Tara, Yaron, Tomer M., Liu, Wenke, Song, Yizhe, Zhang, Zhen

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Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation by Geffen, Yifat, Anand, Shankara, Akiyama, Yo, Yaron, Tomer M., Song, Yizhe, Johnson, Jared L., Govindan, Akshay, Li, Yize, Huntsman, Emily, Wang, Liang-Bo, Birger, Chet, Heiman, David I., Zhang, Qing, Miller, Mendy, Calinawan, Anna, Belkin, Saveliy, Kerelsky, Alexander, Clauser, Karl R., Krug, Karsten, Satpathy, Shankha, Payne, Samuel H., Mani, D.R., Gillette, Michael A., Dhanasekaran, Saravana M., Thiagarajan, Mathangi, Mesri, Mehdi, Rodriguez, Henry, Robles, Ana I., Lazar, Alexander J., Ding, Li, Getz, Gad, An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Cao, Song, Ceccarelli, Michele, Chinnaiyan, Arul M., Chowdhury, Shrabanti, Colaprico, Antonio, Carr, Steven A., da Veiga Leprevost, Felipe, Day, Corbin, Domagalski, Marcin J., Ellis, Matthew J., Fenyo, David, Foltz, Steven M., Francis, Alicia, Gonzalez Robles, Tania J., Gosline, Sara J.C., Gümüş, Zeynep H., Hiltke, Tara, Hong, Runyu, Hu, Yingwei, Huang, Chen, Iavarone, Antonio, Jewel, Scott D., Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Kumar-Sinha, Chandan, Krug, Karsten, Lei, Jonathan T., Liang, Wen-Wei, Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Liu, Wenke, Ma, Weiping, McKerrow, Wilson, Mesri, Mehdi, Newton, Chelsea, Omenn, Gilbert S., Paulovich, Amanda G., Petralia, Francesca, Pugliese, Pietro, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rodrigues, Fernanda Martins, Savage, Sara R., Schadt, Eric E., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Stathias, Vasileios, Storrs, Erik P., Selvan, Myvizhi Esai, Tan, Jimin, Thangudu, Ratna R., Wang, Joshua M., Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Wu, Yige, Yi, Xinpei, Zhang, Bing, Zhang, Xu, Zhang, Zhen

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Pan-cancer proteogenomics connects oncogenic drivers to functional states by Porta-Pardo, Eduard, Bailey, Matthew H., Yaron, Tomer M., Stathias, Vasileios, Geffen, Yifat, Imbach, Kathleen J., Cao, Song, Anand, Shankara, Akiyama, Yo, Liu, Wenke, Wyczalkowski, Matthew A., Song, Yizhe, Storrs, Erik P., Wendl, Michael C., Zhang, Wubing, Sibai, Mustafa, Ruiz-Serra, Victoria, Terekhanova, Nadezhda V., Rodrigues, Fernanda Martins, Clauser, Karl R., Heiman, David I., Zhang, Qing, Aguet, Francois, Calinawan, Anna P., Birger, Chet, Satpathy, Shankha, Zhou, Daniel Cui, Wang, Liang-Bo, Baral, Jessika, Johnson, Jared L., Huntsman, Emily M., Pugliese, Pietro, Colaprico, Antonio, Iavarone, Antonio, Ricketts, Christopher J., Fenyö, David, Payne, Samuel H., Kumar-Sinha, Chandan, Lazar, Alexander J., Getz, Gad, An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Calinawan, Anna, Ceccarelli, Michele, Chan, Daniel W., Chinnaiyan, Arul M., Cho, Hanbyul, Chowdhury, Shrabanti, Day, Corbin, Domagalski, Marcin J., Dou, Yongchao, Druker, Brian J., Edwards, Nathan, Selvan, Myvizhi Esai, Foltz, Steven M., Gonzalez Robles, Tania J., Gümüş, Zeynep H., Hiltke, Tara, Hostetter, Galen, Hu, Yingwei, Huang, Chen, Huntsman, Emily, Jaehnig, Eric J., Jewel, Scott D., Ji, Jiayi, Jiang, Wen, Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Lei, Jonathan T., Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Ma, Weiping, McKerrow, Wilson, Nesvizhskii, Alexey I., Oldroyd, Robert, Omenn, Gilbert S., Petralia, Francesca, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rykunov, Dmitry, Savage, Sara R., Schadt, Eric E., Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Song, Xiaoyu, Tan, Jimin, Wang, Joshua M., Wang, Pei, Wen, Bo, Wiznerowicz, Maciej, Yi, Xinpei, Zhang, Bing, Zhang, Xu, Zhang, Zhen

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Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer by Chowdhury, Shrabanti, Kennedy, Jacob J., Ivey, Richard G., Murillo, Oscar D., Hosseini, Noshad, Song, Xiaoyu, Petralia, Francesca, Calinawan, Anna, Savage, Sara R., Berry, Anna B., Reva, Boris, Ozbek, Umut, Krek, Azra, Ma, Weiping, da Veiga Leprevost, Felipe, Ji, Jiayi, Yoo, Seungyeul, Lin, Chenwei, Voytovich, Uliana J., Huang, Yajue, Lee, Sun-Hee, Bergan, Lindsay, Lorentzen, Travis D., Mesri, Mehdi, Rodriguez, Henry, Hoofnagle, Andrew N., Herbert, Zachary T., Nesvizhskii, Alexey I., Zhang, Bing, Whiteaker, Jeffrey R., Fenyo, David, McKerrow, Wilson, Wang, Joshua, Schürer, Stephan C., Stathias, Vasileios, Chen, X. Steven, Barcellos-Hoff, Mary Helen, Starr, Timothy K., Winterhoff, Boris J., Nelson, Andrew C., Mok, Samuel C., Kaufmann, Scott H., Drescher, Charles, Cieslik, Marcin, Wang, Pei, Birrer, Michael J., Paulovich, Amanda G.

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Abstract 5118: Proteogenomics characterization of HPV-negative head and neck squamous cell carcinomas by Huang, Chen, Chen, Lijun, Li, Yize, Savage, Sara, Schnaubelt, Michael, Leprevost, Felipe V., Cieslik, Marcin, Dou, Yongchao, Wen, Bo, Lei, Jonathan T., Li, Kai, Jaehnig, Eric, Shi, Zhiao, Anurag, Meenakshi, Pan, Jianbo, Hu, Yingwei, Eguez, Rodrigo V., Clark, David J., Wyczalkowski, Matthew, Dhanasekaran, Saravana M., Kumar, Chandan, Colaprico, Antonio, Krug, Karsten, Gillette, Michael, Mani, D. R., Yoo, Seungyeul, Ji, Jiayi, Song, Xiaoyu, Ma, Weiping, Chen, Xi Steven, Pico, Alex, Edwards, Nathan J., Jewell, Scott D., Thiagarajan, Mathangi, Boja, Emily S., Rodriguez, Henry, Sikora, Andrew, Wang, Pei, Ellis, Matthew, Omenn, Gilbert S., Ding, Li, Nesvizhskii, Alexey I., EI-Naggar, Adel K., Chan, Daniel W., Zhang, Hui, Zhang, Bing

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