Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples by Zhang, Yifan, Blomquist, Thomas M, Kusko, Rebecca, Stetson, Daniel, Zhang, Zhihong, Yin, Lihui, Sebra, Robert, Gong, Binsheng, Lococo, Jennifer S, Mittal, Vinay K, Novoradovskaya, Natalia, Yeo, Ji-Youn, Dominiak, Nicole, Hipp, Jennifer, Raymond, Amelia, Qiu, Fujun, Arib, Hanane, Smith, Melissa L, Brock, Jay E, Farkas, Daniel H, Craig, Daniel J, Crawford, Erin L, Li, Dan, Morrison, Tom, Tom, Nikola, Xiao, Wenzhong, Yang, Mary, Mason, Christopher E, Richmond, Todd A, Jones, Wendell, Johann, Jr, Donald J, Shi, Leming, Tong, Weida, Willey, James C, Xu, Joshua

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Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing by Gong, Binsheng, Li, Dan, Łabaj, Paweł P., Pan, Bohu, Novoradovskaya, Natalia, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Chen, Guangchun, Bergstrom Lucas, Anne, LoCoco, Jennifer S., Richmond, Todd A., Tseng, Elizabeth, Kusko, Rebecca, Happe, Scott, Mercer, Timothy R., Pabón-Peña, Carlos, Salmans, Michael, Tilgner, Hagen U., Xiao, Wenzhong, Johann, Donald J., Jones, Wendell, Tong, Weida, Mason, Christopher E., Kreil, David P., Xu, Joshua

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Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA by Willey, James C., Morrison, Tom B., Austermiller, Bradley, Crawford, Erin L., Craig, Daniel J., Blomquist, Thomas M., Jones, Wendell D., Wali, Aminah, Lococo, Jennifer S., Haseley, Nathan, Richmond, Todd A., Novoradovskaya, Natalia, Kusko, Rebecca, Chen, Guangchun, Li, Quan-Zhen, Johann, Donald J., Deveson, Ira W., Mercer, Timothy R., Wu, Leihong, Xu, Joshua

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Abstract 3607: An evaluation of NGS to identify gene fusions using RNA from FFPE solid tumor samples by Parks, Julianna Tdr, Byron, Luo, Crain, Brian, June, Snedecor, Chen, Zhao, Du, Tingting, Sica, Gabriel L., Owonikoko, Taofee K., Neill, Stewart G., Newman, Scott, Saxe, Debra F., LoCoco, Jennifer S., Chuang, Han-Yu, Lin, Charles, Stephens, Kathryn M., Rossi, Michael R., Friedenberg, Matthew C.

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Abstract 565: Analytical performance of TruSight® Tumor 170 in the detection of gene fusions and splice variants using RNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor... by Du, Tingting, Snedecor, June, LoCoco, Jennifer S., Chen, Xiao, Ball, Laurel, Castaneda, Allan, Chou, Danny, Clark, Katie, Crain, Brian, Daulo, Anthony, Do, Manh, Dumm, Sarah, Han, Yonmee, Havern, Mike, Hsieh, Chia-Ling, Jiang, Tingting, Johansen, Suzanne, Lang, Scott, Liang, Rachel, McLean, Jaime, Nassiri, Yousef, Purdy, Austin, Rostron, Jason, Silhavy, Jennifer, Talago, Natasha, Teng, Li, Wu, Kevin, Zlatkov, Clare, Zhao, Chen, Kuraishy, Ali, Gutekunst, Karen, Rozieres, Sohela De, Friedenberg, Matthew, Jager, Anne C., Chuang, Han-Yu

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Abstract 3732: Analytical performance of TruSight® Tumor 170 on small nucleotide variations and gene amplifications using DNA from formalin-fixed, paraffin-embedded (FFPE) solid tu... by Chou, Danny, Chen, Xiao, Purdy, Austin, Teng, Li, Luo, Byron, Zhao, Chen, Ball, Laurel, Castaneda, Allan, Clark, Katie, Crain, Brian, Daulo, Anthony, Do, Manh, Du, Tingting, Dumm, Sarah, Han, Yonmee, Havern, Michael, Hsieh, Chia-Ling, Jiang, Tingting, Johansen, Suzanne, Lang, Scott, Liang, Rachel, LoCoco, Jennifer S., McLean, Jaime, Nassiri, Yousef, Rostron, Jason, Silhavy, Jennifer, Snedecor, June, Talago, Natasha, Wu, Kevin, Zlatkov, Clare, Kuraishy, Ali, Gutekunst, Karen, Rozieres, Sohela De, Friedenberg, Matthew, Chuang, Han-Yu, Jager, Anne C.

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Abstract 5354: Evaluation of quantity, quality and performance with the TruSight® Tumor 170 solid tumor profiling assay of nucleic acids extracted from formalin-fixed paraffin-embe... by LoCoco, Jennifer S., Teng, Li, Chou, Danny, Chen, Xiao, Luo, Byron, Sayne, Jennifer, Adams, Ashley, Ajili, Naseem, Chivers, Cody, Murthy, Beena, Ball, Laurel, Castaneda, Allan, Clark, Katie, Crain, Brian, Daulo, Anthony, Do, Manh, Du, Tingting, Dumm, Sarah, Han, Yonmee, Havern, Michael, Hsieh, Chia-Ling, Jiang, Tingting, Johansen, Suzanne, Lang, Scott, Liang, Rachel, McLean, Jaime, Nassiri, Yousef, Purdy, Austin, Rostron, Jason, Silhavy, Jennifer, Snedecor, June, Talago, Natasha, Wu, Kevin, Zhao, Chen, Zlatkov, Clare, Kuraishy, Ali, Gutekunst, Karen, Rozieres, Sohela De, Friedenberg, Matthew, Chuang, Han-Yu, Jager, Anne C.

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Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions by Gong, Binsheng, Li, Dan, Kusko, Rebecca, Novoradovskaya, Natalia, Zhang, Yifan, Wang, Shangzi, Pabón-Peña, Carlos, Zhang, Zhihong, Lai, Kevin, Cai, Wanshi, LoCoco, Jennifer S, Lader, Eric, Richmond, Todd A, Mittal, Vinay K, Liu, Liang-Chun, Johann, Jr, Donald J, Willey, James C, Bushel, Pierre R, Yu, Ying, Xu, Chang, Chen, Guangchun, Burgess, Daniel, Cawley, Simon, Giorda, Kristina, Haseley, Nathan, Qiu, Fujun, Wilkins, Katherine, Arib, Hanane, Attwooll, Claire, Babson, Kevin, Bao, Longlong, Bao, Wenjun, Lucas, Anne Bergstrom, Best, Hunter, Bhandari, Ambica, Bisgin, Halil, Blackburn, James, Blomquist, Thomas M, Boardman, Lisa, Burgher, Blake, Butler, Daniel J, Chang, Chia-Jung, Chaubey, Alka, Chen, Tao, Chierici, Marco, Chin, Christopher R, Close, Devin, Conroy, Jeffrey, Cooley Coleman, Jessica, Craig, Daniel J, Crawford, Erin, Del Pozo, Angela, Deveson, Ira W, Duncan, Daniel, Eterovic, Agda Karina, Fan, Xiaohui, Foox, Jonathan, Furlanello, Cesare, Ghosal, Abhisek, Glenn, Sean, Guan, Meijian, Haag, Christine, Hang, Xinyi, Happe, Scott, Hennigan, Brittany, Hipp, Jennifer, Hong, Huixiao, Horvath, Kyle, Hu, Jianhong, Hung, Li-Yuan, Jarosz, Mirna, Kerkhof, Jennifer, Kipp, Benjamin, Kreil, David Philip, Łabaj, Paweł, Lapunzina, Pablo, Li, Peng, Li, Quan-Zhen, Li, Weihua, Li, Zhiguang, Liang, Yu, Liu, Shaoqing, Liu, Zhichao, Ma, Charles, Marella, Narasimha, Martín-Arenas, Rubén, Megherbi, Dalila B, Meng, Qingchang, Mieczkowski, Piotr A, Morrison, Tom, Muzny, Donna, Ning, Baitang, Parsons, Barbara L, Paweletz, Cloud P, Pirooznia, Mehdi, Qu, Wubin, Raymond, Amelia, Rindler, Paul, Ringler, Rebecca, Sadikovic, Bekim

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Abstract 529: SNAQ-SEQ™: Use of synthetic internal standards in conjunction with poisson exact test to call variants in contrived circulating tumor DNA specimens by Willey, James C., Crawford, Erin, Craig, Daniel J., Xu, Joshua, Haseley, Nathan, Lococo, Jennifer, Morrison, Tom

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Abstract 3624: Development of a comprehensive and highly sensitive next-generation sequencing assay for detection of copy number variations by Hsieh, Chia-Ling, Zlatkov, Clare, Luo, Byron, Zhao, Chen, Stephens, Kathryn, Chuang, Han-Yu, Kelly, Lisa, Chang, Katherine, Liang, Rachel, Cao, Jianli, Lang, Scott, Adams, Ashley, Ajili, Naseem, Ball, Laurel, Caves, Glorianna, Chou, Danny, Clark, Katie, Crain, Brian, Daulo, Anthony, Dumm, Sarah, Ekram, Ridwana, Han, Yonmee, Jager, Anne, Johansen, Suzanne, Teng, Li, Lococo, Jenn, McLean, Jaime, Parks, Juli, Rostron, Jason, Sayne, Jennifer, Silhavy, Jennifer, Snedecor, June, Toh, Mckenzi, Tong, Stephanie, Upsall, Elizabeth, Walichiewicz, Paulina, Chen, Xiao, Young, Amanda, Kuraishy, Ali, Gutekunst, Karen, Friedenberg, Matt, Lin, Charles

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