An overview of the molecular and epidemiological features of HIV-1 infection in two major cities of Bahia state, Brazil by Amaral, Amanda GM, Oliveira, Isabele B, Carneiro, Diego C, Alcantara, Luiz CJ, Monteiro-Cunha, Joana P

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Inferences about global scenario of HTLV-1 infection using data mining of viral sequences by Araujo, Thessika HA, Barreto, Fernanda K, Miranda, Aline CAM, Alcantara, Luiz CJ

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Human T cell lymphotropic virus type 1 (HTLV-1) infection increases the CD4 count in human immunodeficiency virus type 1 (HIV-1) infected patients submitted to antiretroviral thera... by Rego, Filipe FA, Alcantara, Luiz CJ, de Oliveira, Tulio

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Deep sequencing analysis of Human T cell lymphotropic virus type 1 (HTLV-1) long terminal repeat (LTR) region of tropical spastic paraparesis (TSP)/HTLV-1 associated myelopathy (HA... by Rego, Filipe FA, de Oliveira, Tulio, Galvão-Castro, Bernardo, Alcantara, Luiz CJ

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Molecular study of HBZ and gp21 Human T cell lymphotropic virus type 1 proteins isolated from different clinical profile infected individuals by Mota-Miranda, Aline CA, Barreto, Fernanda K, Baptista, Everton, Monteiro-Cunha, Joana P, Farre-Valve, Lourdes, Galvao-Castro, Bernardo, Alcantara, Luiz CJ

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Human Retrovirus Codon Usage from tRNA Point of View: Therapeutic Insights by Tulio de Oliveira, Aline C. Mota-Miranda, Joana P. Monteiro-Cunha, Bernardo Galvao-Castro, Luiz C. J. Alcantara, Vagner S. Fonseca, Diego Frias

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Molecular characterization of human T-cell leukemia virus type 1 gp46 glycoprotein from healthy carriers and tropical spastic paraparesis/HTLV-associated myelopathy infected indivi... by Mota-Miranda, Aline CA, Barreto, Fernanda K, Amarante, Maria FC, Baptista, Everton, Monteiro-Cunha, Joana P, Farre-Valve, Lourdes, Galvao-Castro, Bernardo, Alcantara, Luiz CJ

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Re-mapping the molecular features of the human immunodeficiency virus type 1 and human T-cell lymphotropic virus type 1 Brazilian sequences using a bioinformatics unit established... by Queiroz, Artur T. L., Mota-Miranda, Aline C. A., Oliveira, Tulio, Moreau, Domingos R., Urpia, Caroline C., Carvalho, Chandra M., Galv o-Castro, Bernardo, Alcantara, Luiz C. J.

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Role of myosin Va on HTLV-1 p8I protein's traffic to cell surface by Jesus, Jaqueline G, Júnior, Rui MPS, de Castro-Amarante, Maria F, Haddad, Simone K, Espreáfico, Enilza M, Franchini, Genoveffa, Alcântara, Luiz CJ

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Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes by Cleemput, Sara, Dumon, Wim, Fonseca, Vagner, Karim, Wasim Abdool, Giovanetti, Marta, Alcantara, Luiz C J, Deforche, Koen, De Oliveira, Tulio

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Zika virus in the Americas: Early epidemiological and genetic findings by Faria, Nuno Rodrigues, do Socorro da Silva Azevedo, Raimunda, Kraemer, Moritz U. G., Souza, Renato, Cunha, Mariana Sequetin, Hill, Sarah C., Thézé, Julien, Bonsall, Michael B., Bowden, Thomas A., Rissanen, Ilona, Rocco, Iray Maria, Nogueira, Juliana Silva, Maeda, Adriana Yurika, da Silva Vasami, Fernanda Giseli, de Lima Macedo, Fernando Luiz, Suzuki, Akemi, Rodrigues, Sueli Guerreiro, Cruz, Ana Cecilia Ribeiro, Nunes, Bruno Tardeli, de Almeida Medeiros, Daniele Barbosa, Rodrigues, Daniela Sueli Guerreiro, Queiroz, Alice Louize Nunes, da Silva, Eliana Vieira Pinto, Henriques, Daniele Freitas, da Rosa, Elisabeth Salbe Travassos, de Oliveira, Consuelo Silva, Martins, Livia Caricio, Vasconcelos, Helena Baldez, Casseb, Livia Medeiros Neves, de Brito Simith, Darlene, Messina, Jane P., Abade, Leandro, Lourenço, José, Alcantara, Luiz Carlos Junior, de Lima, Maricélia Maia, Giovanetti, Marta, Hay, Simon I., de Oliveira, Rodrigo Santos, da Silva Lemos, Poliana, de Oliveira, Layanna Freitas, de Lima, Clayton Pereira Silva, da Silva, Sandro Patroca, de Vasconcelos, Janaina Mota, Franco, Luciano, Cardoso, Jedson Ferreira, da Silva Gonçalves Vianez-Júnior, João Lídio, Mir, Daiana, Bello, Gonzalo, Delatorre, Edson, Khan, Kamran, Creatore, Marisa, Coelho, Giovanini Evelim, de Oliveira, Wanderson Kleber, Tesh, Robert, Pybus, Oliver G., Nunes, Marcio R. T., Vasconcelos, Pedro F. C.

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Mobile real-time surveillance of Zika virus in Brazil by Faria, Nuno Rodrigues, Sabino, Ester C, Nunes, Marcio R T, Alcantara, Luiz Carlos Junior, Loman, Nicholas J, Pybus, Oliver G

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Machine learning models exploring characteristic single-nucleotide signatures in yellow fever virus by Salgado, Álvaro, Melo-Minardi, Raquel C de, Giovanetti, Marta, Veloso, Adriano, Morais-Rodrigues, Francielly, Adelino, Talita, de Jesus, Ronaldo, Tosta, Stephane, Azevedo, Vasco, Lourenco, José, Alcantara, Luiz Carlos J

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Emergence of the Asian lineage of Zika virus in Angola: an outbreak investigation by Hill, Sarah C, Vasconcelos, Jocelyne, Neto, Zoraima, Jandondo, Domingos, Zé-Zé, Líbia, Aguiar, Renato Santana, Xavier, Joilson, Thézé, Julien, Mirandela, Marinela, Micolo Cândido, Ana Luísa, Vaz, Filipa, Sebastião, Cruz dos Santos, Wu, Chieh-Hsi, Kraemer, Moritz U G, Melo, Adriana, Schamber-Reis, Bruno L F, de Azevedo, Girlene S, Tanuri, Amilcar, Higa, Luiza M, Clemente, Carina, da Silva, Sara Pereira, da Silva Candido, Darlan, Claro, Ingra M, Quibuco, Domingos, Domingos, Cristóvão, Pocongo, Bárbara, Watts, Alexander G, Khan, Kamran, Alcantara, Luiz Carlos Junior, Sabino, Ester C, Lackritz, Eve, Pybus, Oliver G, Alves, Maria-João, Afonso, Joana, Faria, Nuno R

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Genomic monitoring unveil the early detection of the SARS‐CoV‐2 B.1.351 (beta) variant (20H/501Y.V2) in Brazil by Slavov, Svetoslav N., Patané, José S. L., Bezerra, Rafael dos Santos, Giovanetti, Marta, Fonseca, Vagner, Martins, Antonio J., Viala, Vincent L., Rodrigues, Evandra S., Santos, Elaine V., Barros, Claudia R. S., Marqueze, Elaine C., Santos, Bibiana, Aburjaile, Flavia, Neto, Raul M., Moretti, Debora B., Haddad, Ricardo, Calado, Rodrigo T., Kitajima, João P., Freitas, Erika, Schlesinger, David, Junior de Alcantara, Luiz C., Elias, Maria C., Sampaio, Sandra C., Kashima, Simone, Covas, Dimas T.

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standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences by Alcantara, Luiz Carlos Junior, Cassol, Sharon, Libin, Pieter, Deforche, Koen, Pybus, Oliver G, Van Ranst, Marc, Galvão-Castro, Bernardo, Vandamme, Anne-Mieke, de Oliveira, Tulio

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Epidemiological and Genomic Analysis of Asymptomatic SARS-CoV-2 Infections during the Delta and Omicron Epidemic Waves in São Paulo City, Brazil by Slavov, Svetoslav N, Lima, Alex R J, Ribeiro, Gabriela, de Lima, Loyze P O, Barros, Claudia R Dos S, Marqueze, Elaine C, Martins, Antonio J, Martininghi, Maiara, Palmieri, Melissa, Caldeira, Luiz A V, Silva, Fabiana E V da, Cacherik, Giselle, Nicolodelli, Aline L, Kashima, Simone, Giovanetti, Marta, Alcantara, Luiz Carlos Junior, Sampaio, Sandra C, Elias, Maria C

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Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019 by de Jesus, Jaqueline Goes, Dutra, Karina Rocha, Sales, Flavia Cristina da Silva, Claro, Ingra Morales, Terzian, Ana Carolina, Candido, Darlan da Silva, Hill, Sarah C, Thézé, Julien, Torres, Celeste, D’Agostini, Tatiana Lang, Felix, Alvina Clara, Reis, Andreia F Negri, Alcantara, Luiz Carlos Junior, de Abreu, André L, Croda, Júlio HR, de Oliveira, Wanderson K, de Filipis, Ana Maria Bispo, Camis, Maria do Carmo Rodrigues dos Santos, Romano, Camila Malta, Loman, Nick J, Pybus, Oliver G, Sabino, Ester Cerdeira, Nogueira, Mauricio L, Faria, Nuno Rodrigues

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Newborns With Zika Virus-Associated Microcephaly Exhibit Marked Systemic Inflammatory Imbalance by Vinhaes, Caian L, Arriaga, María B, de Almeida, Breno L, Oliveira, João V, Santos, Cleiton S, Calcagno, Juan I, Carvalho, Tereza X, Giovanetti, Marta, Alcantara, Luiz Carlos J, de Siqueira, Isadora C, Andrade, Bruno B

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Increased interregional virus exchange and nucleotide diversity outline the expansion of chikungunya virus in Brazil by Xavier, Joilson, Alcantara, Luiz Carlos Junior, Fonseca, Vagner, Lima, Mauricio, Castro, Emerson, Fritsch, Hegger, Oliveira, Carla, Guimarães, Natalia, Adelino, Talita, Evaristo, Mariane, Rodrigues, Evandra S., Santos, Elaine Vieira, de La-Roque, Debora, de Moraes, Laise, Tosta, Stephane, Neto, Adelino, Rosewell, Alexander, Mendonça, Ana Flavia, Leite, Anderson, Vasconcelos, Andreza, Silva de Mello, Arabela L., Vasconcelos, Bergson, Montalbano, Camila A., Zanluca, Camila, Freitas, Carla, de Albuquerque, Carlos F. C., Duarte dos Santos, Claudia Nunes, Santos, Cleiton S., dos Santos, Cliomar Alves, Gonçalves, Crhistinne C. Maymone, Teixeira, Dalane, Neto, Daniel F. L., Cabral, Diego, de Oliveira, Elaine C., Noia Maciel, Ethel L., Pereira, Felicidade Mota, Iani, Felipe, de Carvalho, Fernanda P., Andrade, Gabriela, Bezerra, Gabriela, de Castro Lichs, Gislene G., Pereira, Glauco Carvalho, Barroso, Haline, Franz, Helena Cristina Ferreira, Ferreira, Hivylla, Gomes, Iago, Riediger, Irina N., Rodrigues, Isabela, de Siqueira, Isadora C., Silva, Jacilane, Rico, Jairo Mendez, Lima, Jaqueline, Abrantes, Jayra, do Nascimento, Jean Phellipe M., Wasserheit, Judith N., Pastor, Julia, de Magalhães, Jurandy J. F., Luz, Kleber Giovanni, Lima Neto, Lidio G., Frutuoso, Livia C. V., da Silva, Luana Barbosa, Sena, Ludmila, de Sousa, Luis Arthur F., Pereira, Luiz Augusto, Demarchi, Luiz, Câmara, Magaly C. B., Astete, Marcela G., Almiron, Maria, Lima, Maricelia, Umaki Zardin, Marina C. S., Presibella, Mayra M., Falcão, Melissa B., Gale, Michael, Freire, Naishe, Marques, Nelson, de Moura, Noely F. O., Almeida Da Silva, Pedro E., Rabinowitz, Peter, da Cunha, Rivaldo V., Trinta, Karen S., do Carmo Said, Rodrigo F., Kato, Rodrigo, Stabeli, Rodrigo, de Jesus, Ronaldo, Hans Santos, Roselene, Kashima, Simone, Slavov, Svetoslav N., Andrade, Tamires, Rocha, Themis, Carneiro, Thiago, Nardy, Vanessa, da Silva, Vinicius, Carvalho, Walterlene G., Van Voorhis, Wesley C., Araujo, Wildo N., de Filippis, Ana M. B., Giovanetti, Marta

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