Full-length transcriptome assembly from RNA-Seq data without a reference genome by Friedman, Nir, Regev, Aviv, Grabherr, Manfred G, Haas, Brian J, Yassour, Moran, Levin, Joshua Z, Thompson, Dawn A, Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Zeng, Qiandong, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, di Palma, Federica, Birren, Bruce W, Nusbaum, Chad, Lindblad-Toh, Kerstin

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The genomic basis of adaptive evolution in threespine sticklebacks by Jones, Felicity C., Grabherr, Manfred G., Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C., White, Simon, Birney, Ewan, Searle, Stephen, Schmutz, Jeremy, Grimwood, Jane, Dickson, Mark C., Myers, Richard M., Miller, Craig T., Summers, Brian R., Knecht, Anne K., Brady, Shannon D., Zhang, Haili, Pollen, Alex A., Howes, Timothy, Amemiya, Chris, Lander, Eric S., Di Palma, Federica, Lindblad-Toh, Kerstin, Kingsley, David M.

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Genome-wide synteny through highly sensitive sequence alignment: Satsuma by Grabherr, Manfred G., Russell, Pamela, Meyer, Miriah, Mauceli, Evan, Alföldi, Jessica, Di Palma, Federica, Lindblad-Toh, Kerstin

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An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts by Hoeppner, Marc P, Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R S, Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G, Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S, di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G

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Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background by Elvers, Ingegerd, Turner-Maier, Jason, Swofford, Ross, Koltookian, Michele, Johnson, Jeremy, Stewart, Chip, Zhang, Cheng-Zhong, Schumacher, Steven E, Beroukhim, Rameen, Rosenberg, Mara, Thomas, Rachael, Mauceli, Evan, Getz, Gad, Palma, Federica Di, Modiano, Jaime F, Breen, Matthew, Lindblad-Toh, Kerstin, Alföldi, Jessica

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Genome-wide association identifies a deletion in the 3′ untranslated region of Striatin in a canine model of arrhythmogenic right ventricular cardiomyopathy by Meurs, Kathryn M, Mauceli, Evan, Lahmers, Sunshine, Acland, Gregory M, White, Stephen N, Lindblad-Toh, Kerstin

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A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs by Olsson, Mia, Meadows, Jennifer R S, Truvé, Katarina, Rosengren Pielberg, Gerli, Puppo, Francesca, Mauceli, Evan, Quilez, Javier, Tonomura, Noriko, Zanna, Giordana, Docampo, Maria José, Bassols, Anna, Avery, Anne C, Karlsson, Elinor K, Thomas, Anne, Kastner, Daniel L, Bongcam-Rudloff, Erik, Webster, Matthew T, Sanchez, Armand, Hedhammar, Ake, Remmers, Elaine F, Andersson, Leif, Ferrer, Lluis, Tintle, Linda, Lindblad-Toh, Kerstin

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Genome-wide association study identifies shared risk loci common to two malignancies in golden retrievers by Tonomura, Noriko, Elvers, Ingegerd, Thomas, Rachael, Megquier, Kate, Turner-Maier, Jason, Howald, Cedric, Sarver, Aaron L, Swofford, Ross, Frantz, Aric M, Ito, Daisuke, Mauceli, Evan, Arendt, Maja, Noh, Hyun Ji, Koltookian, Michele, Biagi, Tara, Fryc, Sarah, Williams, Christina, Avery, Anne C, Kim, Jong-Hyuk, Barber, Lisa, Burgess, Kristine, Lander, Eric S, Karlsson, Elinor K, Azuma, Chieko, Modiano, Jaime F, Breen, Matthew, Lindblad-Toh, Kerstin

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Unsupervised genome-wide recognition of local relationship patterns by Zamani, Neda, Russell, Pamela, Lantz, Henrik, Hoeppner, Marc P, Meadows, Jennifer Rs, Vijay, Nagarjun, Mauceli, Evan, di Palma, Federica, Lindblad-Toh, Kerstin, Jern, Patric, Grabherr, Manfred G

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Targeted next generation sequencing for newborn screening of Menkes disease by Parad, Richard B., Kaler, Stephen G., Mauceli, Evan, Sokolsky, Tanya, Yi, Ling, Bhattacharjee, Arindam

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Whole-genome sequence assembly for mammalian genomes: Arachne 2 by Jaffe, David B, Butler, Jonathan, Gnerre, Sante, Mauceli, Evan, Lindblad-Toh, Kerstin, Mesirov, Jill P, Zody, Michael C, Lander, Eric S

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Exploiting nucleotide composition to engineer promoters by Grabherr, Manfred G, Pontiller, Jens, Mauceli, Evan, Ernst, Wolfgang, Baumann, Martina, Biagi, Tara, Swofford, Ross, Russell, Pamela, Zody, Michael C, Di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Reingard M

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The African coelacanth genome provides insights into tetrapod evolution by Amemiya, Chris T., Alföldi, Jessica, Lee, Alison P., Fan, Shaohua, Philippe, Hervé, MacCallum, Iain, Braasch, Ingo, Manousaki, Tereza, Schneider, Igor, Rohner, Nicolas, Organ, Chris, Chalopin, Domitille, Smith, Jeramiah J., Robinson, Mark, Dorrington, Rosemary A., Gerdol, Marco, Aken, Bronwen, Biscotti, Maria Assunta, Barucca, Marco, Baurain, Denis, Berlin, Aaron M., Blatch, Gregory L., Buonocore, Francesco, Burmester, Thorsten, Campbell, Michael S., Canapa, Adriana, Cannon, John P., Christoffels, Alan, De Moro, Gianluca, Edkins, Adrienne L., Fan, Lin, Fausto, Anna Maria, Feiner, Nathalie, Forconi, Mariko, Gamieldien, Junaid, Gnerre, Sante, Gnirke, Andreas, Goldstone, Jared V., Haerty, Wilfried, Hahn, Mark E., Hesse, Uljana, Hoffmann, Steve, Johnson, Jeremy, Karchner, Sibel I., Kuraku, Shigehiro, Lara, Marcia, Levin, Joshua Z., Litman, Gary W., Mauceli, Evan, Miyake, Tsutomu, Mueller, M. Gail, Nelson, David R., Nitsche, Anne, Olmo, Ettore, Ota, Tatsuya, Pallavicini, Alberto, Panji, Sumir, Picone, Barbara, Ponting, Chris P., Prohaska, Sonja J., Przybylski, Dariusz, Saha, Nil Ratan, Ravi, Vydianathan, Ribeiro, Filipe J., Sauka-Spengler, Tatjana, Scapigliati, Giuseppe, Searle, Stephen M. J., Sharpe, Ted, Simakov, Oleg, Stadler, Peter F., Stegeman, John J., Sumiyama, Kenta, Tabbaa, Diana, Tafer, Hakim, Turner-Maier, Jason, van Heusden, Peter, White, Simon, Williams, Louise, Yandell, Mark, Brinkmann, Henner, Volff, Jean-Nicolas, Tabin, Clifford J., Shubin, Neil, Schartl, Manfred, Jaffe, David B., Postlethwait, John H., Venkatesh, Byrappa, Di Palma, Federica, Lander, Eric S., Meyer, Axel, Lindblad-Toh, Kerstin

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Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea by Amselem, Joelle, Cuomo, Christina A, van Kan, Jan A L, Viaud, Muriel, Benito, Ernesto P, Couloux, Arnaud, Coutinho, Pedro M, de Vries, Ronald P, Dyer, Paul S, Fillinger, Sabine, Fournier, Elisabeth, Gout, Lilian, Hahn, Matthias, Kohn, Linda, Lapalu, Nicolas, Plummer, Kim M, Pradier, Jean-Marc, Quévillon, Emmanuel, Sharon, Amir, Simon, Adeline, ten Have, Arjen, Tudzynski, Bettina, Tudzynski, Paul, Wincker, Patrick, Andrew, Marion, Anthouard, Véronique, Beever, Ross E, Beffa, Rolland, Benoit, Isabelle, Bouzid, Ourdia, Brault, Baptiste, Chen, Zehua, Choquer, Mathias, Collémare, Jérome, Cotton, Pascale, Danchin, Etienne G, Da Silva, Corinne, Gautier, Angélique, Giraud, Corinne, Giraud, Tatiana, Gonzalez, Celedonio, Grossetete, Sandrine, Güldener, Ulrich, Henrissat, Bernard, Howlett, Barbara J, Kodira, Chinnappa, Kretschmer, Matthias, Lappartient, Anne, Leroch, Michaela, Levis, Caroline, Mauceli, Evan, Neuvéglise, Cécile, Oeser, Birgitt, Pearson, Matthew, Poulain, Julie, Poussereau, Nathalie, Quesneville, Hadi, Rascle, Christine, Schumacher, Julia, Ségurens, Béatrice, Sexton, Adrienne, Silva, Evelyn, Sirven, Catherine, Soanes, Darren M, Talbot, Nicholas J, Templeton, Matt, Yandava, Chandri, Yarden, Oded, Zeng, Qiandong, Rollins, Jeffrey A, Lebrun, Marc-Henri, Dickman, Marty

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Initial sequence of the chimpanzee genome and comparison with the human genome by and Analysis Consortium, The Chimpanzee Sequencing

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The genome of the green anole lizard and a comparative analysis with birds and mammals by Alföldi, Jessica, Di Palma, Federica, Grabherr, Manfred, Williams, Christina, Kong, Lesheng, Mauceli, Evan, Russell, Pamela, Lowe, Craig B., Glor, Richard E., Jaffe, Jacob D., Ray, David A., Boissinot, Stephane, Shedlock, Andrew M., Botka, Christopher, Castoe, Todd A., Colbourne, John K., Fujita, Matthew K., Moreno, Ricardo Godinez, ten Hallers, Boudewijn F., Haussler, David, Heger, Andreas, Heiman, David, Janes, Daniel E., Johnson, Jeremy, de Jong, Pieter J., Koriabine, Maxim Y., Lara, Marcia, Novick, Peter A., Organ, Chris L., Peach, Sally E., Poe, Steven, Pollock, David D., de Queiroz, Kevin, Sanger, Thomas, Searle, Steve, Smith, Jeremy D., Smith, Zachary, Swofford, Ross, Turner-Maier, Jason, Wade, Juli, Young, Sarah, Zadissa, Amonida, Edwards, Scott V., Glenn, Travis C., Schneider, Christopher J., Losos, Jonathan B., Lander, Eric S., Breen, Matthew, Ponting, Chris P., Lindblad-Toh, Kerstin

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Abstract 1421: Flexible tools for the development and performance verification of customized target enrichment panels by Hendrickson, Cynthia L., Mauceli, Evan, Barry, Andrew, Patel, Kruti, Huang, Catherine, Adams, Scott, Anekella, Bharathi

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Evolution of genes and genomes on the Drosophila phylogeny by Clark, Andrew G, Eisen, Michael B, Smith, Douglas R, Bergman, Casey M, Oliver, Brian, Markow, Therese A, Kaufman, Thomas C, Kellis, Manolis, Gelbart, William, Iyer, Venky N, Pollard, Daniel A, Sackton, Timothy B, Larracuente, Amanda M, Singh, Nadia D, Abad, Jose P, Abt, Dawn N, Adryan, Boris, Aguade, Montserrat, Akashi, Hiroshi, Anderson, Wyatt W, Aquadro, Charles F, Ardell, David H, Arguello, Roman, Artieri, Carlo G, Barbash, Daniel A, Barker, Daniel, Barsanti, Paolo, Batterham, Phil, Batzoglou, Serafim, Begun, Dave, Bhutkar, Arjun, Blanco, Enrico, Bosak, Stephanie A, Bradley, Robert K, Brand, Adrianne D, Brent, Michael R, Brooks, Angela N, Brown, Randall H, Butlin, Roger K, Caggese, Corrado, Calvi, Brian R, Bernardo de Carvalho, A, Caspi, Anat, Castrezana, Sergio, Celniker, Susan E, Chang, Jean L, Chapple, Charles, Chatterji, Sourav, Chinwalla, Asif, Civetta, Alberto, Clifton, Sandra W, Comeron, Josep M, Costello, James C, Coyne, Jerry A, Daub, Jennifer, David, Robert G, Delcher, Arthur L, Delehaunty, Kim, Do, Chuong B, Ebling, Heather, Edwards, Kevin, Eickbush, Thomas, Evans, Jay D, Filipski, Alan, Findeiss, Sven, Freyhult, Eva, Fulton, Lucinda, Fulton, Robert, Garcia, Ana C L, Gardiner, Anastasia, Garfield, David A, Garvin, Barry E, Gibson, Greg, Gilbert, Don, Gnerre, Sante, Godfrey, Jennifer, Good, Robert, Gotea, Valer, Gravely, Brenton, Greenberg, Anthony J, Griffiths-Jones, Sam, Gross, Samuel, Guigo, Roderic, Gustafson, Erik A, Haerty, Wilfried, Hahn, Matthew W, Halligan, Daniel L, Halpern, Aaron L, Halter, Gillian M, Han, Mira V, Heger, Andreas, Hillier, LaDeana, Hinrichs, Angie S, Holmes, Ian, Hoskins, Roger A, Hubisz, Melissa J, Hultmark, Dan, Huntley, Melanie A, Jaffe, David B, Jagadeeshan, Santosh

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype by Weissenbach, Jean, Jaillon, Olivier, Aury, Jean-Marc, Brunet, Frédéric, Petit, Jean-Louis, Stange-Thomann, Nicole, Mauceli, Evan, Bouneau, Laurence, Fischer, Cécile, Ozouf-Costaz, Catherine, Bernot, Alain, Nicaud, Sophie, Jaffe, David, Fisher, Sheila, Lutfalla, Georges, Dossat, Carole, Segurens, Béatrice, Dasilva, Corinne, Salanoubat, Marcel, Levy, Michael, Boudet, Nathalie, Castellano, Sergi, Anthouard, Véronique, Jubin, Claire, Castelli, Vanina, Katinka, Michael, Vacherie, Benoît, Biémont, Christian, Skalli, Zineb, Cattolico, Laurence, Poulain, Julie, de Berardinis, Véronique, Cruaud, Corinne, Duprat, Simone, Brottier, Philippe, Coutanceau, Jean-Pierre, Gouzy, Jérôme, Parra, Genis, Lardier, Guillaume, Chapple, Charles, McKernan, Kevin J, McEwan, Paul, Bosak, Stephanie, Kellis, Manolis, Volff, Jean-Nicolas, Guigó, Roderic, Zody, Michael C, Mesirov, Jill, Lindblad-Toh, Kerstin, Birren, Bruce, Nusbaum, Chad, Kahn, Daniel, Robinson-Rechavi, Marc, Laudet, Vincent, Schachter, Vincent, Quétier, Francis, Saurin, William, Scarpelli, Claude, Wincker, Patrick, Lander, Eric S, Roest Crollius, Hugues

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A splice site mutation in a gene encoding for PDK4, a mitochondrial protein, is associated with the development of dilated cardiomyopathy in the Doberman pinscher by Meurs, Kathryn M., Lahmers, Sunshine, Keene, Bruce W., White, Stephen N., Oyama, Mark A., Mauceli, Evan, Lindblad-Toh, Kerstin

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