Immunogenomic pan-cancer landscape reveals immune escape mechanisms and immunoediting histories by Mizuno, Shinichi, Yamaguchi, Rui, Hasegawa, Takanori, Hayashi, Shuto, Fujita, Masashi, Zhang, Fan, Koh, Youngil, Lee, Su-Yeon, Yoon, Sung-Soo, Shimizu, Eigo, Komura, Mitsuhiro, Fujimoto, Akihiro, Nagai, Momoko, Kato, Mamoru, Liang, Han, Miyano, Satoru, Zhang, Zemin, Nakagawa, Hidewaki, Imoto, Seiya

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Genetic Analysis of Pheochromocytoma and Paraganglioma Complicating Cyanotic Congenital Heart Disease by Ogasawara, Tatsuki, Fujii, Yoichi, Kakiuchi, Nobuyuki, Shiozawa, Yusuke, Sakamoto, Ryuichi, Ogawa, Yoshihiro, Ootani, Katsuki, Ito, Etsuro, Tanaka, Tomoaki, Yoshida, Yusaku, Kimura, Noriko, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Miyano, Satoru, Ogawa, Seishi

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Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology by Puchałka, Jacek, Oberhardt, Matthew A, Godinho, Miguel, Bielecka, Agata, Regenhardt, Daniela, Timmis, Kenneth N, Papin, Jason A, Martins dos Santos, Vítor A P

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Acquired initiating mutations in early hematopoietic cells of CLL patients by Damm, Frederik, Mylonas, Elena, Cosson, Adrien, Yoshida, Kenichi, Della Valle, Véronique, Mouly, Enguerran, Diop, M'boyba, Scourzic, Laurianne, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Miyano, Satoru, Kikushige, Yoshikane, Davi, Frederick, Lambert, Jérôme, Gautheret, Daniel, Merle-Béral, Hélène, Sutton, Laurent, Dessen, Philippe, Solary, Eric, Akashi, Koichi, Vainchenker, William, Mercher, Thomas, Droin, Nathalie, Ogawa, Seishi, Nguyen-Khac, Florence, Bernard, Olivier A

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ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data by Hayashi, Shuto, Yamaguchi, Rui, Mizuno, Shinichi, Komura, Mitsuhiro, Miyano, Satoru, Nakagawa, Hidewaki, Imoto, Seiya

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lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites by Ataman, Meric, Hatzimanikatis, Vassily

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Recursive Random Lasso (RRLasso) for Identifying Anti-Cancer Drug Targets by Park, Heewon, Imoto, Seiya, Miyano, Satoru

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Automatic sparse principal component analysis by Park, Heewon, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru

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Integrated exome and RNA sequencing of dedifferentiated liposarcoma by Hirata, Makoto, Asano, Naofumi, Katayama, Kotoe, Yoshida, Akihiko, Tsuda, Yusuke, Sekimizu, Masaya, Mitani, Sachiyo, Kobayashi, Eisuke, Komiyama, Motokiyo, Fujimoto, Hiroyuki, Goto, Takahiro, Iwamoto, Yukihide, Naka, Norifumi, Iwata, Shintaro, Nishida, Yoshihiro, Hiruma, Toru, Hiraga, Hiroaki, Kawano, Hirotaka, Motoi, Toru, Oda, Yoshinao, Matsubara, Daisuke, Fujita, Masashi, Shibata, Tatsuhiro, Nakagawa, Hidewaki, Nakayama, Robert, Kondo, Tadashi, Imoto, Seiya, Miyano, Satoru, Kawai, Akira, Yamaguchi, Rui, Ichikawa, Hitoshi, Matsuda, Koichi

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BCOR and BCORL1 mutations in myelodysplastic syndromes and related disorders by Damm, Frederik, Chesnais, Virginie, Nagata, Yasunobu, Yoshida, Kenichi, Scourzic, Laurianne, Okuno, Yusuke, Itzykson, Raphael, Sanada, Masashi, Shiraishi, Yuichi, Gelsi-Boyer, Véronique, Renneville, Aline, Miyano, Satoru, Mori, Hiraku, Shih, Lee-Yung, Park, Sophie, Dreyfus, François, Guerci-Bresler, Agnes, Solary, Eric, Rose, Christian, Cheze, Stéphane, Prébet, Thomas, Vey, Norbert, Legentil, Marion, Duffourd, Yannis, de Botton, Stéphane, Preudhomme, Claude, Birnbaum, Daniel, Bernard, Olivier A., Ogawa, Seishi, Fontenay, Michaela, Kosmider, Olivier

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Unbiased Detection of Driver Mutations in Extramammary Paget Disease by Ishida, Yoshihiro, Kakiuchi, Nobuyuki, Yoshida, Kenichi, Inoue, Yoshikage, Irie, Hiroyuki, Kataoka, Tatsuki R, Hirata, Masahiro, Funakoshi, Takeru, Matsushita, Shigeto, Hata, Hiroo, Uchi, Hiroshi, Yamamoto, Yuki, Fujisawa, Yasuhiro, Fujimura, Taku, Saiki, Ryunosuke, Takeuchi, Kengo, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Otsuka, Atsushi, Miyano, Satoru, Kabashima, Kenji, Ogawa, Seishi

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Abnormal hematopoiesis and autoimmunity in human subjects with germline IKZF1 mutations by Hoshino, Akihiro, MD, PhD, Okada, Satoshi, MD, PhD, Yoshida, Kenichi, MD, PhD, Nishida, Naonori, MD, PhD, Okuno, Yusuke, MD, PhD, Ueno, Hiroo, MD, Yamashita, Motoi, MD, Okano, Tsubasa, MD, Tsumura, Miyuki, PhD, Nishimura, Shiho, MD, Sakata, Sonoko, MD, Kobayashi, Masao, MD, PhD, Nakamura, Haruna, MD, Kamizono, Junji, MD, PhD, Mitsui-Sekinaka, Kanako, MD, Ichimura, Takuya, MD, Ohga, Shouichi, MD, PhD, Nakazawa, Yozo, MD, PhD, Takagi, Masatoshi, MD, PhD, Imai, Kohsuke, MD, PhD, Shiraishi, Yuichi, MD, PhD, Chiba, Kenichi, BA, Tanaka, Hiroko, BS, Miyano, Satoru, PhD, Ogawa, Seishi, MD, PhD, Kojima, Seiji, MD, PhD, Nonoyama, Shigeaki, MD, PhD, Morio, Tomohiro, MD, PhD, Kanegane, Hirokazu, MD, PhD

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Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens by Hasegawa, Takanori, Hayashi, Shuto, Shimizu, Eigo, Mizuno, Shinichi, Niida, Atsushi, Yamaguchi, Rui, Miyano, Satoru, Nakagawa, Hidewaki, Imoto, Seiya

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The landscape of genetic aberrations in myxofibrosarcoma by Takeuchi, Yasuhide, Yoshida, Kenichi, Halik, Adriane, Kunitz, Annegret, Suzuki, Hiromichi, Kakiuchi, Nobuyuki, Shiozawa, Yusuke, Yokoyama, Akira, Inoue, Yoshikage, Hirano, Tomonori, Yoshizato, Tetsuichi, Aoki, Kosuke, Fujii, Yoichi, Nannya, Yasuhito, Makishima, Hideki, Pfitzner, Berit Maria, Bullinger, Lars, Hirata, Masahiro, Jinnouchi, Keita, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Miyano, Satoru, Okamoto, Takeshi, Haga, Hironori, Ogawa, Seishi, Damm, Frederik

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Unique mutation portraits and frequent COL2A1 gene alteration in chondrosarcoma by Totoki, Yasushi, Yoshida, Akihiko, Hosoda, Fumie, Nakamura, Hiromi, Hama, Natsuko, Ogura, Koichi, Yoshida, Aki, Fujiwara, Tomohiro, Arai, Yasuhito, Toguchida, Junya, Tsuda, Hitoshi, Miyano, Satoru, Kawai, Akira, Shibata, Tatsuhiro

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Application of targeted nanopore sequencing for the screening and determination of structural variants in patients with Lynch syndrome by Yamaguchi, Kiyoshi, Kasajima, Rika, Takane, Kiyoko, Hatakeyama, Seira, Shimizu, Eigo, Yamaguchi, Rui, Katayama, Kotoe, Arai, Masami, Ishioka, Chikashi, Iwama, Takeo, Kaneko, Satoshi, Matsubara, Nagahide, Moriya, Yoshihiro, Nomizu, Tadashi, Sugano, Kokichi, Tamura, Kazuo, Tomita, Naohiro, Yoshida, Teruhiko, Sugihara, Kenichi, Nakamura, Yusuke, Miyano, Satoru, Imoto, Seiya, Furukawa, Yoichi, Ikenoue, Tsuneo

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Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma by Yamauchi, Mai, Yamaguchi, Rui, Nakata, Asuka, Kohno, Takashi, Nagasaki, Masao, Shimamura, Teppei, Imoto, Seiya, Saito, Ayumu, Ueno, Kazuko, Hatanaka, Yousuke, Yoshida, Ryo, Higuchi, Tomoyuki, Nomura, Masaharu, Beer, David G, Yokota, Jun, Miyano, Satoru, Gotoh, Noriko

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The Evolving Genomic Landscape of Esophageal Squamous Cell Carcinoma Under Chemoradiotherapy by Hirata, Hidenari, Niida, Atsushi, Kakiuchi, Nobuyuki, Uchi, Ryutaro, Sugimachi, Keishi, Masuda, Takaaki, Saito, Tomoko, Kageyama, Shun-Ichiro, Motomura, Yushi, Ito, Shuhei, Yoshitake, Tadamasa, Tsurumaru, Daisuke, Nishimuta, Yusuke, Yokoyama, Akira, Hasegawa, Takanori, Chiba, Kenichi, Shiraishi, Yuichi, Du, Junyan, Miura, Fumihito, Morita, Masaru, Toh, Yasushi, Hirakawa, Masakazu, Shioyama, Yoshiyuki, Ito, Takashi, Akimoto, Tetsuo, Miyano, Satoru, Shibata, Tatsuhiro, Mori, Masaki, Suzuki, Yutaka, Ogawa, Seishi, Ishigami, Kousei, Mimori, Koshi

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Characterization of the B-cell receptor repertoires in peanut allergic subjects undergoing oral immunotherapy by Kiyotani, Kazuma, Mai, Tu H, Yamaguchi, Rui, Yew, Poh Yin, Kulis, Mike, Orgel, Kelly, Imoto, Seiya, Miyano, Satoru, Burks, A Wesley, Nakamura, Yusuke

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Massively parallel sequencing of tenosynovial giant cell tumors reveals novel CSF1 fusion transcripts and novel somatic CBL mutations by Tsuda, Yusuke, Hirata, Makoto, Katayama, Kotoe, Motoi, Toru, Matsubara, Daisuke, Oda, Yoshinao, Fujita, Masashi, Kobayashi, Hiroshi, Kawano, Hirotaka, Nishida, Yoshihiro, Sakai, Tomohisa, Okuma, Tomotake, Goto, Takahiro, Ogura, Koichi, Kawai, Akira, Ae, Keisuke, Anazawa, Ukei, Suehara, Yoshiyuki, Iwata, Shintaro, Miyano, Satoru, Imoto, Seiya, Shibata, Tatsuhiro, Nakagawa, Hidewaki, Yamaguchi, Rui, Tanaka, Sakae, Matsuda, Koichi

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