A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer by Patkar, Sushant, Magen, Assaf, Sharan, Roded, Hannenhalli, Sridhar

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Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells by Magen, Assaf, Nie, Jia, Ciucci, Thomas, Tamoutounour, Samira, Zhao, Yongmei, Mehta, Monika, Tran, Bao, McGavern, Dorian B., Hannenhalli, Sridhar, Bosselut, Rémy

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Immunology of COVID-19: Current State of the Science by Vabret, Nicolas, Britton, Graham J., Gruber, Conor, Hegde, Samarth, Kim, Joel, Kuksin, Maria, Levantovsky, Rachel, Malle, Louise, Moreira, Alvaro, Park, Matthew D., Pia, Luisanna, Risson, Emma, Saffern, Miriam, Salomé, Bérengère, Esai Selvan, Myvizhi, Spindler, Matthew P., Tan, Jessica, van der Heide, Verena, Gregory, Jill K., Alexandropoulos, Konstantina, Bhardwaj, Nina, Brown, Brian D., Greenbaum, Benjamin, Gümüş, Zeynep H., Homann, Dirk, Horowitz, Amir, Kamphorst, Alice O., Curotto de Lafaille, Maria A., Mehandru, Saurabh, Merad, Miriam, Samstein, Robert M., Agrawal, Manasi, Aleynick, Mark, Belabed, Meriem, Brown, Matthew, Casanova-Acebes, Maria, Catalan, Jovani, Centa, Monica, Charap, Andrew, Chan, Andrew, Chen, Steven T., Chung, Jonathan, Bozkus, Cansu Cimen, Cody, Evan, Cossarini, Francesca, Dalla, Erica, Fernandez, Nicolas, Grout, John, Ruan, Dan Fu, Hamon, Pauline, Humblin, Etienne, Jha, Divya, Kodysh, Julia, Leader, Andrew, Lin, Matthew, Lindblad, Katherine, Lozano-Ojalvo, Daniel, Lubitz, Gabrielle, Magen, Assaf, Mahmood, Zafar, Martinez-Delgado, Gustavo, Mateus-Tique, Jaime, Meritt, Elliot, Moon, Chang, Noel, Justine, O’Donnell, Tim, Ota, Miyo, Plitt, Tamar, Pothula, Venu, Redes, Jamie, Reyes Torres, Ivan, Roberto, Mark, Sanchez-Paulete, Alfonso R., Shang, Joan, Schanoski, Alessandra Soares, Suprun, Maria, Tran, Michelle, Vaninov, Natalie, Wilk, C. Matthias, Aguirre-Ghiso, Julio, Bogunovic, Dusan, Cho, Judy, Faith, Jeremiah, Grasset, Emilie, Heeger, Peter, Kenigsberg, Ephraim, Krammer, Florian, Laserson, Uri

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The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments by Grieshaber-Bouyer, Ricardo, Radtke, Felix A., Cunin, Pierre, Stifano, Giuseppina, Levescot, Anaïs, Vijaykumar, Brinda, Nelson-Maney, Nathan, Blaustein, Rachel B., Monach, Paul A., Nigrovic, Peter A.

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Pathogenic ILC1 and NKp46+ ILC3 Are Defined by Core and Tissue-Specific Transcriptional Signatures in Autoimmune Neuroinflammation by Spinner, Camille A, Guan, Yukun, Fan, Yu, Magen, Assaf, Ciucci, Thomas, Bosselut, Rémy, Meerzaman, Daoud, Lazarevic, Vanja

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Abstract 1558: Data-driven approach to detecting novel gene interactions in cancer with applications to drug response prediction and cancer stratification by Magen, Assaf, Das, Avinash, Lee, Joo, Hannenhalli, Sridhar, Ruppin, Eytan

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Abstract 515: Heterogeneity of PD-1hi CD8 T cells associates with response to PD-1 blockade in hepatocellular carcinoma by Magen, Assaf, Hamon, Pauline, Humblin, Etienne, Schanoski, Alessandra, Kim, Joel, Berichel, Jessica Le, Kenigsberg, Ephraim, Schwartz, Myron, Marron, Thomas, Kamphorst, Alice, Merad, Miriam

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Beyond Synthetic Lethality: Charting the Landscape of Pairwise Gene Expression States Associated with Survival in Cancer by Magen, Assaf, Das Sahu, Avinash, Lee, Joo Sang, Sharmin, Mahfuza, Lugo, Alexander, Gutkind, J. Silvio, Schäffer, Alejandro A., Ruppin, Eytan, Hannenhalli, Sridhar

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Abstract 64: Characterization of molecular and spatial diversity of macrophages in hepatocellular carcinoma by Hamon, Pauline, Magen, Assaf, Cohen, Merav, Tabachnikova, Alexandra, Chang, Christie, Buckup, Mark, Troncoso, Leanna, Zhao, Zhen, Kim, Joel, Giladi, Amir, Malissen, Nausicaa, Desland, Fiona, Berichel, Jessica Le, Amit, Ido, Kenigsberg, Ephraim, Schwartz, Myron, Marron, Thomas, Merad, Miriam

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A streamlined whole blood CyTOF workflow defines a circulating immune cell signature of COVID‐19 by Geanon, Daniel, Lee, Brian, Gonzalez‐Kozlova, Edgar, Kelly, Geoffrey, Handler, Diana, Upadhyaya, Bhaskar, Leech, John, De Real, Ronaldo M., Herbinet, Manon, Magen, Assaf, Del Valle, Diane, Charney, Alexander, Kim‐Schulze, Seunghee, Gnjatic, Sacha, Merad, Miriam, Rahman, Adeeb H.

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Abstract 3611: Determining the regulation and role of mreg DC in tumor immunity by Mattiuz, Raphael, Assad, Nima, Hamon, Pauline, Magen, Assaf, Berichel, Jessica Le, Merad, Miriam

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Abstract A201: Single-cell resolution profiling of tumor-reactive CD4 T-cells reveals immune landscape alterations by Magen, Assaf, Nie, Jia, Ciucci, Thomas, Zhao, Yongmei, Mehta, Monika, Tran, Bao, Hannenhalli, Sridhar, Bosselut, Rémy

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543 Response to checkpoint blockade in HCC is associated with IgG1 skewing by Sweeney, Robert, Gonzalez-Kozlova, Edgar, Tabachnikova, Alexandra, Chang, Christie, Walker, Laura, Magen, Assaf, Schwartz, Myron, Marron, Thomas, Merad, Miriam, Gnjatic, Sacha

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690 Correlates of poor response to neoadjuvant anti-PD-1 therapy in hepatocellular carcinoma (HCC) include WNT pathway activation and loss of HLA expression by Kundu, Kunal, Fiaschi, Nathalie, Wang, Wei, Kou, Baijun, Magen, Assaf, Hamon, Pauline, Gnjatic, Sacha, Schwartz, Myron, Kamphorst, Alice, Marron, Thomas, Merad, Miriam, Guo, Chunguang, Thurston, Gavin, Gupta, Namita, Cygan, Kamil

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Single Cell RNA Sequencing in Patients Enrolled in a Selinexor Clinical Trial Reveals Overexpression of Alternative Nuclear Export Pathways Associated with Resistance to Selinexor... by Cohen, Yael C, Zada, Mor, Wang, Shuang-Yin, Bentur, Ohad S., Chubar, Evgeni, Cohen, Amos, Lavi, Noa, Magen, Hila, Gatt, Moshe, Zektser, Miri, Leiba, Merav, Stemer, Galia, Shragai, Tamir, Avivi, Irit, Weiner, Assaf, Amit, Ido

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