Non-coding RNA by Mattick, John S., Makunin, Igor V.

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Small regulatory RNAs in mammals by Mattick, John S., Makunin, Igor V.

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Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud by Afgan, Enis, Sloggett, Clare, Goonasekera, Nuwan, Makunin, Igor, Benson, Derek, Crowe, Mark, Gladman, Simon, Kowsar, Yousef, Pheasant, Michael, Horst, Ron, Lonie, Andrew

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Ultraconserved Elements in the Human Genome by Bejerano, Gill, Pheasant, Michael, Makunin, Igor, Stephen, Stuart, Kent, W. James, Mattick, John S., Haussler, David

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Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data by Jung, Chol-Hee, Hansen, Martin A, Makunin, Igor V, Korbie, Darren J, Mattick, John S

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Comparison of ultra-conserved elements in drosophilids and vertebrates by Makunin, Igor V, Shloma, Viktor V, Stephen, Stuart J, Pheasant, Michael, Belyakin, Stepan N

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Transposon-free regions in mammalian genomes by Simons, Cas, Pheasant, Michael, Makunin, Igor V, Mattick, John S

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Late replication domains are evolutionary conserved in the Drosophila genome by Andreyenkova, Natalya G, Kolesnikova, Tatyana D, Makunin, Igor V, Pokholkova, Galina V, Boldyreva, Lidiya V, Zykova, Tatyana Yu, Zhimulev, Igor F, Belyaeva, Elena S

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Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock by Stephen, Stuart, Pheasant, Michael, Makunin, Igor V., Mattick, John S.

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Orthologous microRNA genes are located in cancer-associated genomic regions in human and mouse by Makunin, Igor V, Pheasant, Michael, Simons, Cas, Mattick, John S

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Maintenance of transposon-free regions throughout vertebrate evolution by Simons, Cas, Makunin, Igor V, Pheasant, Michael, Mattick, John S

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Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories by Belyakin, S.N, Christophides, G.K, Alekseyenko, A.A, Kriventseva, E.V, Belyaeva, E.S, Nanayev, R.A, Makunin, I.V, Kafatos, F.C, Zhimulev, I.F

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Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome by Babenko, Vladimir N, Makunin, Igor V, Brusentsova, Irina V, Belyaeva, Elena S, Maksimov, Daniil A, Belyakin, Stepan N, Maroy, Peter, Vasil'eva, Lyubov A, Zhimulev, Igor F

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Underreplicated regions in Drosophila melanogaster are enriched with fast-evolving genes and highly conserved noncoding sequences by Makunin, Igor V, Kolesnikova, Tatyana D, Andreyenkova, Natalya G

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Rare mutations in RINT1 predispose carriers to breast and Lynch syndrome-spectrum cancers by Park, Daniel J, Tao, Kayoko, Le Calvez-Kelm, Florence, Nguyen-Dumont, Tu, Robinot, Nivonirina, Hammet, Fleur, Odefrey, Fabrice, Tsimiklis, Helen, Teo, Zhi L, Thingholm, Louise B, Young, Erin L, Voegele, Catherine, Lonie, Andrew, Pope, Bernard J, Roane, Terrell C, Bell, Russell, Hu, Hao, Shankaracharya, Huff, Chad D, Ellis, Jonathan, Li, Jun, Makunin, Igor V, John, Esther M, Andrulis, Irene L, Terry, Mary B, Daly, Mary, Buys, Saundra S, Snyder, Carrie, Lynch, Henry T, Devilee, Peter, Giles, Graham G, Hopper, John L, Feng, Bing-Jian, Lesueur, Fabienne, Tavtigian, Sean V, Southey, Melissa C, Goldgar, David E

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Identification of conserved Drosophila-specific euchromatin-restricted non-coding sequence motifs by Jung, Chol-Hee, Makunin, Igor V., Mattick, John S.

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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update by Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn A, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael C, Ostrovsky, Alexander E, Mahmoud, Alexandru, Lonie, Andrew J, Syme, Anna, Fouilloux, Anne, Bretaudeau, Anthony, Kumar, Anup, Eschenlauer, Arthur C, DeSanto, Assunta D, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn A, Langhorst, Bradley W, Carr, Bridget, Raubenolt, Bryan A, Hyde, Cameron J, Bromhead, Catherine J, Barnett, Christopher B, Royaux, Coline, Gallardo, Cristóbal, Fornika, Daniel J, Baker, Dannon, Bouvier, Dave, Clements, Dave, de Lima Morais, David A, Tabernero, David Lopez, Lariviere, Delphine, Nasr, Engy, Zambelli, Federico, Heyl, Florian, Psomopoulos, Fotis, Coppens, Frederik, Price, Gareth R, Cuccuru, Gianmauro, Corguillé, Gildas Le, Von Kuster, Greg, Akbulut, Gulsum Gudukbay, Rasche, Helena, Hotz, Hans-Rudolf, Eguinoa, Ignacio, Makunin, Igor, Ranawaka, Isuru J, Taylor, James P, Joshi, Jayadev, Hillman-Jackson, Jennifer, Chilton, John M, Kamali, Kaivan, Suderman, Keith, Poterlowicz, Krzysztof, Yvan, Le Bras, Lopez-Delisle, Lucille, Sargent, Luke, Bassetti, Madeline E, Tangaro, Marco Antonio, van den Beek, Marius, Čech, Martin, Bernt, Matthias, Fahrner, Matthias, Tekman, Mehmet, Föll, Melanie C, Crusoe, Michael R, Roncoroni, Miguel, Kucher, Natalie, Coraor, Nate, Stoler, Nicholas, Rhodes, Nick, Soranzo, Nicola, Pinter, Niko, Goonasekera, Nuwan A, Moreno, Pablo A, Videm, Pavankumar, Melanie, Petera, Mandreoli, Pietro, Jagtap, Pratik D, Gu, Qiang, Weber, Ralf J M, Lazarus, Ross, Vorderman, Ruben H P, Hiltemann, Saskia, Golitsynskiy, Sergey, Garg, Shilpa, Bray, Simon A, Gladman, Simon L, Leo, Simone, Mehta, Subina P, Griffin, Timothy J, Jalili, Vahid, Yves, Vandenbrouck, Wen, Victor, Nagampalli, Vijay K, Bacon, Wendi A, de Koning, Willem, Maier, Wolfgang

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An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes by Soldà, Giulia, Makunin, Igor V., Sezerman, Osman U., Corradin, Alberto, Corti, Giorgio, Guffanti, Alessandro

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Conservation of domain structure in a fast-evolving heterochromatic SUUR protein in drosophilids by Yurlova, Anna A, Makunin, Igor V, Kolesnikova, Tatyana D, Posukh, Olga V, Belyaeva, Elena S, Zhimulev, Igor F

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The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update by Abueg, Linelle Ann L, Afgan, Enis, Allart, Olivier, Awan, Ahmed H, Bacon, Wendi A, Baker, Dannon, Bassetti, Madeline, Batut, Bérénice, Bernt, Matthias, Blankenberg, Daniel, Bombarely, Aureliano, Bretaudeau, Anthony, Bromhead, Catherine J, Burke, Melissa L, Capon, Patrick K, Čech, Martin, Chavero-Díez, María, Chilton, John M, Collins, Tyler J, Coppens, Frederik, Coraor, Nate, Cuccuru, Gianmauro, Cumbo, Fabio, Davis, John, De Geest, Paul F, de Koning, Willem, Demko, Martin, DeSanto, Assunta, Begines, José Manuel Domínguez, Doyle, Maria A, Droesbeke, Bert, Erxleben-Eggenhofer, Anika, Föll, Melanie C, Formenti, Giulio, Fouilloux, Anne, Gangazhe, Rendani, Genthon, Tanguy, Goecks, Jeremy, Beltran, Alejandra N Gonzalez, Goonasekera, Nuwan A, Goué, Nadia, Griffin, Timothy J, Grüning, Björn A, Guerler, Aysam, Gundersen, Sveinung, Gustafsson, Ove Johan Ragnar, Hall, Christina, Harrop, Thomas W, Hecht, Helge, Heidari, Alireza, Heisner, Tillman, Heyl, Florian, Hiltemann, Saskia, Hotz, Hans-Rudolf, Hyde, Cameron J, Jagtap, Pratik D, Jakiela, Julia, Johnson, James E, Joshi, Jayadev, Jossé, Marie, Jum’ah, Khaled, Kalaš, Matúš, Kamieniecka, Katarzyna, Kayikcioglu, Tunc, Konkol, Markus, Kostrykin, Leonid, Kucher, Natalie, Kumar, Anup, Kuntz, Mira, Lariviere, Delphine, Lazarus, Ross, Bras, Yvan Le, Corguillé, Gildas Le, Lee, Justin, Leo, Simone, Liborio, Leandro, Libouban, Romane, Tabernero, David López, Lopez-Delisle, Lucille, Los, Laila S, Mahmoud, Alexandru, Makunin, Igor, Marin, Pierre, Mehta, Subina, Mok, Winnie, Moreno, Pablo A, Morier-Genoud, François, Mosher, Stephen, Müller, Teresa, Nasr, Engy, Nekrutenko, Anton, Nelson, Tiffanie M, Oba, Asime J, Ostrovsky, Alexander, Polunina, Polina V, Poterlowicz, Krzysztof, Price, Elliott J, Price, Gareth R, Rasche, Helena, Raubenolt, Bryan

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