Systematic review: Whipple's disease (Tropheryma whipplei infection) and its unmasking by tumour necrosis factor inhibitors by Marth, T.

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ART: a next-generation sequencing read simulator by Huang, Weichun, Li, Leping, Myers, Jason R., Marth, Gabor T.

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MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping by Lee, Wan-Ping, Stromberg, Michael P, Ward, Alistair, Stewart, Chip, Garrison, Erik P, Marth, Gabor T

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SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications by Zhao, Mengyao, Lee, Wan-Ping, Garrison, Erik P, Marth, Gabor T

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The variant call format and VCFtools by Danecek, Petr, Auton, Adam, Abecasis, Goncalo, Albers, Cornelis A., Banks, Eric, DePristo, Mark A., Handsaker, Robert E., Lunter, Gerton, Marth, Gabor T., Sherry, Stephen T., McVean, Gilean, Durbin, Richard

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BamTools: a C++ API and toolkit for analyzing and managing BAM files by BARNETT, Derek W, GARRISON, Erik K, QUINLAN, Aaron R, STRÖMBERG, Michael P, MARTH, Gabor T

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Mapping copy number variation by population-scale genome sequencing by Mills, Ryan E., Walter, Klaudia, Stewart, Chip, Handsaker, Robert E., Chen, Ken, Alkan, Can, Abyzov, Alexej, Yoon, Seungtai Chris, Ye, Kai, Cheetham, R. Keira, Chinwalla, Asif, Conrad, Donald F., Fu, Yutao, Grubert, Fabian, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Iakoucheva, Lilia M., Iqbal, Zamin, Kang, Shuli, Kidd, Jeffrey M., Konkel, Miriam K., Korn, Joshua, Khurana, Ekta, Kural, Deniz, Lam, Hugo Y. K., Leng, Jing, Li, Ruiqiang, Li, Yingrui, Lin, Chang-Yun, Luo, Ruibang, Mu, Xinmeng Jasmine, Nemesh, James, Peckham, Heather E., Rausch, Tobias, Scally, Aylwyn, Shi, Xinghua, Stromberg, Michael P., Stütz, Adrian M., Urban, Alexander Eckehart, Walker, Jerilyn A., Wu, Jiantao, Zhang, Yujun, Zhang, Zhengdong D., Batzer, Mark A., Ding, Li, Marth, Gabor T., McVean, Gil, Sebat, Jonathan, Snyder, Michael, Wang, Jun, Ye, Kenny, Eichler, Evan E., Gerstein, Mark B., Hurles, Matthew E., Lee, Charles, McCarroll, Steven A., Korbel, Jan O.

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Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing by Hellwig, Sabine, Nix, David A, Gligorich, Keith M, O'Shea, John M, Thomas, Alun, Fuertes, Carrie L, Bhetariya, Preetida J, Marth, Gabor T, Bronner, Mary P, Underhill, Hunter R

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A comprehensive map of mobile element insertion polymorphisms in humans by Stewart, Chip, Kural, Deniz, Strömberg, Michael P, Walker, Jerilyn A, Konkel, Miriam K, Stütz, Adrian M, Urban, Alexander E, Grubert, Fabian, Lam, Hugo Y K, Lee, Wan-Ping, Busby, Michele, Indap, Amit R, Garrison, Erik, Huff, Chad, Xing, Jinchuan, Snyder, Michael P, Jorde, Lynn B, Batzer, Mark A, Korbel, Jan O, Marth, Gabor T

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The Allele Frequency Spectrum in Genome-Wide Human Variation Data Reveals Signals of Differential Demographic History in Three Large World Populations by Marth, Gabor T, Czabarka, Eva, Murvai, Janos, Sherry, Stephen T

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A DOC2 Protein Identified by Mutational Profiling Is Essential for Apicomplexan Parasite Exocytosis by Farrell, Andrew, Thirugnanam, Sivasakthivel, Lorestani, Alexander, Dvorin, Jeffrey D., Eidell, Keith P., Ferguson, David J.P., Anderson-White, Brooke R., Duraisingh, Manoj T., Marth, Gabor T., Gubbels, Marc-Jan

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The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA by Nix, David A, Hellwig, Sabine, Conley, Christopher, Thomas, Alun, Fuertes, Carrie L, Hamil, Cindy L, Bhetariya, Preetida J, Garrido-Laguna, Ignacio, Marth, Gabor T, Bronner, Mary P, Underhill, Hunter R

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Multi-platform discovery of haplotype-resolved structural variation in human genomes by Chaisson, Mark J. P., Sanders, Ashley D., Zhao, Xuefang, Malhotra, Ankit, Porubsky, David, Rausch, Tobias, Gardner, Eugene J., Rodriguez, Oscar L., Guo, Li, Collins, Ryan L., Fan, Xian, Wen, Jia, Handsaker, Robert E., Fairley, Susan, Kronenberg, Zev N., Kong, Xiangmeng, Hormozdiari, Fereydoun, Lee, Dillon, Wenger, Aaron M., Hastie, Alex R., Antaki, Danny, Anantharaman, Thomas, Audano, Peter A., Brand, Harrison, Cantsilieris, Stuart, Cao, Han, Cerveira, Eliza, Chen, Chong, Chen, Xintong, Chin, Chen-Shan, Chong, Zechen, Chuang, Nelson T., Lambert, Christine C., Church, Deanna M., Clarke, Laura, Farrell, Andrew, Flores, Joey, Galeev, Timur, Gorkin, David U., Gujral, Madhusudan, Guryev, Victor, Heaton, William Haynes, Korlach, Jonas, Kumar, Sushant, Kwon, Jee Young, Lam, Ernest T., Lee, Jong Eun, Lee, Joyce, Lee, Wan-Ping, Lee, Sau Peng, Li, Shantao, Marks, Patrick, Viaud-Martinez, Karine, Meiers, Sascha, Munson, Katherine M., Navarro, Fabio C. P., Nelson, Bradley J., Nodzak, Conor, Noor, Amina, Kyriazopoulou-Panagiotopoulou, Sofia, Pang, Andy W. C., Qiu, Yunjiang, Rosanio, Gabriel, Ryan, Mallory, Stütz, Adrian, Spierings, Diana C. J., Ward, Alistair, Welch, AnneMarie E., Xiao, Ming, Xu, Wei, Zhang, Chengsheng, Zhu, Qihui, Zheng-Bradley, Xiangqun, Lowy, Ernesto, Yakneen, Sergei, McCarroll, Steven, Jun, Goo, Ding, Li, Koh, Chong Lek, Ren, Bing, Flicek, Paul, Chen, Ken, Gerstein, Mark B., Kwok, Pui-Yan, Lansdorp, Peter M., Marth, Gabor T., Sebat, Jonathan, Shi, Xinghua, Bashir, Ali, Ye, Kai, Devine, Scott E., Talkowski, Michael E., Mills, Ryan E., Marschall, Tobias, Korbel, Jan O., Eichler, Evan E., Lee, Charles

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The functional spectrum of low-frequency coding variation by Marth, Gabor T, Yu, Fuli, Indap, Amit R, Garimella, Kiran, Gravel, Simon, Leong, Wen Fung, Tyler-Smith, Chris, Bainbridge, Matthew, Blackwell, Tom, Zheng-Bradley, Xiangqun, Chen, Yuan, Challis, Danny, Clarke, Laura, Ball, Edward V, Cibulskis, Kristian, Cooper, David N, Fulton, Bob, Hartl, Chris, Koboldt, Dan, Muzny, Donna, Smith, Richard, Sougnez, Carrie, Stewart, Chip, Ward, Alistair, Yu, Jin, Xue, Yali, Altshuler, David, Bustamante, Carlos D, Clark, Andrew G, Daly, Mark, DePristo, Mark, Flicek, Paul, Gabriel, Stacey, Mardis, Elaine, Palotie, Aarno, Gibbs, Richard

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Rapid whole-genome mutational profiling using next-generation sequencing technologies by Smith, Douglas R, Quinlan, Aaron R, Peckham, Heather E, Makowsky, Kathryn, Tao, Wei, Woolf, Betty, Shen, Lei, Donahue, William F, Tusneem, Nadeem, Stromberg, Michael P, Stewart, Donald A, Zhang, Lu, Ranade, Swati S, Warner, Jason B, Lee, Clarence C, Coleman, Brittney E, Zhang, Zheng, McLaughlin, Stephen F, Malek, Joel A, Sorenson, Jon M, Blanchard, Alan P, Chapman, Jarrod, Hillman, David, Chen, Feng, Rokhsar, Daniel S, McKernan, Kevin J, Jeffries, Thomas W, Marth, Gabor T, Richardson, Paul M

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Tangram: a comprehensive toolbox for mobile element insertion detection by Wu, Jiantao, Lee, Wan-Ping, Ward, Alistair, Walker, Jerilyn A, Konkel, Miriam K, Batzer, Mark A, Marth, Gabor T

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Clonal dynamics of aggressive systemic mastocytosis on avapritinib therapy by Huang, Xiaomeng, Pomicter, Anthony D., Ahmann, Jonathan, Qiao, Yi, Chen, Opal S., George, Tracy I., Cruz-Rodriguez, Nataly, Guru, Sameer Ahmad, Marth, Gabor T., Deininger, Michael W.

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Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder by An, Joon-Yong, Lin, Kevin, Zhu, Lingxue, Werling, Donna M, Dong, Shan, Brand, Harrison, Wang, Harold Z, Zhao, Xuefang, Schwartz, Grace B, Collins, Ryan L, Currall, Benjamin B, Dastmalchi, Claudia, Dea, Jeanselle, Duhn, Clif, Gilson, Michael C, Klei, Lambertus, Liang, Lindsay, Markenscoff-Papadimitriou, Eirene, Pochareddy, Sirisha, Ahituv, Nadav, Buxbaum, Joseph D, Coon, Hilary, Daly, Mark J, Kim, Young Shin, Marth, Gabor T, Neale, Benjamin M, Quinlan, Aaron R, Rubenstein, John L, Sestan, Nenad, State, Matthew W, Willsey, A Jeremy, Talkowski, Michael E, Devlin, Bernie, Roeder, Kathryn, Sanders, Stephan J

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Genetic basis for phenotypic differences between different Toxoplasma gondii type I strains by Yang, Ninghan, Farrell, Andrew, Niedelman, Wendy, Melo, Mariane, Lu, Diana, Julien, Lindsay, Marth, Gabor T, Gubbels, Marc-Jan, Saeij, Jeroen P J

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Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy by Ostrander, Betsy E. P., Butterfield, Russell J., Pedersen, Brent S., Farrell, Andrew J., Layer, Ryan M., Ward, Alistair, Miller, Chase, DiSera, Tonya, Filloux, Francis M., Candee, Meghan S., Newcomb, Tara, Bonkowsky, Joshua L., Marth, Gabor T., Quinlan, Aaron R.

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