Genetic determinants of cellular addiction to DNA polymerase theta by Feng, Wanjuan, Simpson, Dennis A., Carvajal-Garcia, Juan, Price, Brandon A., Kumar, Rashmi J., Mose, Lisle E., Wood, Richard D., Rashid, Naim, Purvis, Jeremy E., Parker, Joel S., Ramsden, Dale A., Gupta, Gaorav P.

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ABRA: improved coding indel detection via assembly-based realignment by Mose, Lisle E, Wilkerson, Matthew D, Hayes, D Neil, Perou, Charles M, Parker, Joel S

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Prognostic value of B cells in cutaneous melanoma by Selitsky, Sara R, Mose, Lisle E, Smith, Christof C, Chai, Shengjie, Hoadley, Katherine A, Dittmer, Dirk P, Moschos, Stergios J, Parker, Joel S, Vincent, Benjamin G

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Germline Analysis from Tumor-Germline Sequencing Dyads to Identify Clinically Actionable Secondary Findings by Seifert, Bryce A, O'Daniel, Julianne M, Amin, Krunal, Marchuk, Daniel S, Patel, Nirali M, Parker, Joel S, Hoyle, Alan P, Mose, Lisle E, Marron, Andrew, Hayward, Michele C, Bizon, Christopher, Wilhelmsen, Kirk C, Evans, James P, Earp, 3rd, H Shelton, Sharpless, Norman E, Hayes, D Neil, Berg, Jonathan S

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Virus expression detection reveals RNA-sequencing contamination in TCGA by Selitsky, Sara R, Marron, David, Hollern, Daniel, Mose, Lisle E, Hoadley, Katherine A, Jones, Corbin, Parker, Joel S, Dittmer, Dirk P, Perou, Charles M

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Integrated RNA and DNA sequencing improves mutation detection in low purity tumors by Wilkerson, Matthew D, Cabanski, Christopher R, Sun, Wei, Hoadley, Katherine A, Walter, Vonn, Mose, Lisle E, Troester, Melissa A, Hammerman, Peter S, Parker, Joel S, Perou, Charles M, Hayes, D Neil

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SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling by Silva, Grace O, Siegel, Marni B, Mose, Lisle E, Parker, Joel S, Sun, Wei, Perou, Charles M, Chen, Mengjie

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A P53-Independent DNA Damage Response Suppresses Oncogenic Proliferation and Genome Instability by Fagan-Solis, Katerina D., Simpson, Dennis A., Kumar, Rashmi J., Martelotto, Luciano G., Mose, Lisle E., Rashid, Naim U., Ho, Alice Y., Powell, Simon N., Wen, Y. Hannah, Parker, Joel S., Reis-Filho, Jorge S., Petrini, John H.J., Gupta, Gaorav P.

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Translating transcriptomic findings from cancer model systems to humans through joint dimension reduction by Price, Brandon A., Marron, J. S., Mose, Lisle E., Perou, Charles M., Parker, Joel S.

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A novel protein isoform of the RON tyrosine kinase receptor transforms human pancreatic duct epithelial cells by Chakedis, J, French, R, Babicky, M, Jaquish, D, Howard, H, Mose, E, Lam, R, Holman, P, Miyamoto, J, Walterscheid, Z, Lowy, A M

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Improved indel detection in DNA and RNA via realignment with ABRA2 by Mose, Lisle E, Perou, Charles M, Parker, Joel S

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Genomic characterization of rare molecular subclasses of hepatocellular carcinoma by Damrauer, Jeffrey S., Smith, Markia A., Walter, Vonn, Thennavan, Aatish, Mose, Lisle E., Selitsky, Sara R., Hoadley, Katherine A.

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Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality by Selitsky, Sara R, Marron, David, Mose, Lisle E, Parker, Joel S, Dittmer, Dirk P

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Proton-sensing Receptor GPR65 Regulates Allergic Gastrointestinal Eosinophilia by Zhu, X, Mose, E, Hogan, S, Zimmermann, N

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Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer by Mose, Lisle E, Selitsky, Sara R, Bixby, Lisa M, Marron, David L, Iglesia, Michael D, Serody, Jonathan S, Perou, Charles M, Vincent, Benjamin G, Parker, Joel S

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Claudin-low bladder tumors are immune infiltrated and actively immune suppressed by Kardos, Jordan, Chai, Shengjie, Mose, Lisle E, Selitsky, Sara R, Krishnan, Bhavani, Saito, Ryoichi, Iglesia, Michael D, Milowsky, Matthew I, Parker, Joel S, Kim, William Y, Vincent, Benjamin G

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DNA Methylation Regulates Expression of the RON Tyrosine Kinase Receptor in Pancreatic Cancer by Chakedis, J, French, R, Jaquish, D, Mose, E, Howard, H, Lowy, A.M

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Integrative Molecular Characterization of Malignant Pleural Mesothelioma by Hmeljak, Julija, Sanchez-Vega, Francisco, Hoadley, Katherine A, Shih, Juliann, Stewart, Chip, Heiman, David, Tarpey, Patrick, Danilova, Ludmila, Drill, Esther, Gibb, Ewan A, Bowlby, Reanne, Kanchi, Rupa, Osmanbeyoglu, Hatice U, Sekido, Yoshitaka, Takeshita, Jumpei, Newton, Yulia, Graim, Kiley, Gupta, Manaswi, Gay, Carl M, Diao, Lixia, Gibbs, David L, Thorsson, Vesteinn, Iype, Lisa, Kantheti, Havish, Severson, David T, Ravegnini, Gloria, Desmeules, Patrice, Jungbluth, Achim A, Travis, William D, Dacic, Sanja, Chirieac, Lucian R, Galateau-Sallé, Françoise, Fujimoto, Junya, Husain, Aliya N, Silveira, Henrique C, Rusch, Valerie W, Rintoul, Robert C, Pass, Harvey, Kindler, Hedy, Zauderer, Marjorie G, Kwiatkowski, David J, Bueno, Raphael, Tsao, Anne S, Creaney, Jenette, Lichtenberg, Tara, Leraas, Kristen, Bowen, Jay, Felau, Ina, Zenklusen, Jean Claude, Akbani, Rehan, Cherniack, Andrew D, Byers, Lauren A, Noble, Michael S, Fletcher, Jonathan A, Robertson, A Gordon, Shen, Ronglai, Aburatani, Hiroyuki, Robinson, Bruce W, Campbell, Peter, Ladanyi, Marc

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Integrated Molecular Characterization of Uterine Carcinosarcoma by Cherniack, Andrew D., Murray, Bradley A., Hu, Xin, Ling, Shiyun, Soslow, Robert A., Zuna, Rosemary E., Laird, Peter W., Kucherlapati, Raju, Mills, Gordon B., Akbani, Rehan, Auman, J. Todd, Balasundaram, Miruna, Balu, Saianand, Baylin, Stephen B., Bodenheimer, Tom, Bogomolniy, Faina, Brooks, Denise, Carlsen, Rebecca, Cherniack, Andrew D., Cho, Juok, Chuah, Eric, Chudamani, Sudha, David, Mutch, Ferguson, Martin L., Frick, Jessica, Gabriel, Stacey, Gehlenborg, Nils, Gerken, Mark, Getz, Gad, Gupta, Manaswi, Heiman, David I., Hess, Julian, Hoffmann, Robert, Holt, Robert A., Hu, Xin, Hutter, Carolyn M., Jefferys, Stuart R., Kanchi, Rupa S., Kandoth, Cyriac, Kerr, Sarah, Kim, Jaegil, Lai, Phillip H., Laird, Peter W., Lander, Eric, Lawrence, Michael S., Lee, Darlene, Leshchiner, Ignaty, Levine, Douglas A., Lichtenberg, Tara M., Ling, Shiyun, Liu, Jia, Liu, Wenbin, Lolla, Laxmi, Lu, Yiling, Ma, Yussanne, Maglinte, Dennis T., Marra, Marco A., Mayo, Michael, Meng, Shaowu, Meyerson, Matthew, Moore, Richard A., Mose, Lisle E., Mungall, Karen, Murray, Bradley A., Naresh, Rashi, Parker, Joel S., Perou, Charles M., Radenbaugh, Amie J., Ramirez, Nilsa C., Rathmell, W. Kimryn, Roach, Jeffrey, Robertson, A. Gordon, Sadeghi, Sara, Saksena, Gordon, Salvesen, Helga B., Sheth, Margi, Shi, Yan, Shih, Juliann, Skelly, Tara, Sofia, Heidi J., Soloway, Matthew G., Sun, Charlie, Tan, Donghui, Tarnuzzer, Roy, Thorne, Leigh B., Tseng, Jill, Veluvolu, Umadevi, Verhaak, Roel G.W., Voet, Doug, Wan, Yunhu, Wang, Chen, Weisenberger, Daniel J., Wilkerson, Matthew D., Winterhoff, Boris, Wong, Tina, Yang, Liming, Zhang, Hailei, Zhu, Jing-chun, Zuna, Rosemary E., Weinstein, John N.

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Combining RON And EGFR Kinase Directed Therapy Markedly Inhibits Orthotopic Pancreatic Cancer Growth by Babicky, M.L, Jaquish, D, Mose, E, Yu, P, French, R, Lowy, A.M

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