deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data by McPherson, Andrew, Hormozdiari, Fereydoun, Zayed, Abdalnasser, Giuliany, Ryan, Ha, Gavin, Sun, Mark G F, Griffith, Malachi, Heravi Moussavi, Alireza, Senz, Janine, Melnyk, Nataliya, Pacheco, Marina, Marra, Marco A, Hirst, Martin, Nielsen, Torsten O, Sahinalp, S Cenk, Huntsman, David, Shah, Sohrab P

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Subtype-specific mutation of PPP2R1A in endometrial and ovarian carcinomas by McConechy, Melissa K, Anglesio, Michael S, Kalloger, Steve E, Yang, Winnie, Senz, Janine, Chow, Christine, Heravi-Moussavi, Alireza, Morin, Gregg B, Mes-Masson, Anne-Marie, Carey, Mark S, McAlpine, Jessica N, Kwon, Janice S, Prentice, Leah M, Boyd, Niki, Shah, Sohrab P, Gilks, C. Blake, Huntsman, David G

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MicroRNA-708 is a novel regulator of the Hoxa9 program in myeloid cells by Schneider, Edith, Pochert, Nicole, Ruess, Christoph, MacPhee, Liam, Escano, Leo, Miller, Christina, Krowiorz, Kathrin, Delsing Malmberg, Erik, Heravi-Moussavi, Alireza, Lorzadeh, Alireza, Ashouri, Arghavan, Grasedieck, Sarah, Sperb, Nadine, Kumar Kopparapu, Pradeep, Iben, Sebastian, Staffas, Anna, Xiang, Ping, Rösler, Reinhild, Kanduri, Meena, Larsson, Erik, Fogelstrand, Linda, Döhner, Hartmut, Döhner, Konstanze, Wiese, Sebastian, Hirst, Martin, Keith Humphries, R., Palmqvist, Lars, Kuchenbauer, Florian, Rouhi, Arefeh

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Micro-ribonucleic acid-155 is a direct target of Meis1, but not a driver in acute myeloid leukemia by Schneider, Edith, Staffas, Anna, Röhner, Linda, Malmberg, Erik D, Ashouri, Arghavan, Krowiorz, Kathrin, Pochert, Nicole, Miller, Christina, Wei, Stella Yuan, Arabanian, Laleh, Buske, Christian, Döhner, Hartmut, Bullinger, Lars, Fogelstrand, Linda, Heuser, Michael, Döhner, Konstanze, Xiang, Ping, Ruschmann, Jens, Petriv, Oleh I, Heravi-Moussavi, Alireza, Hansen, Carl L, Hirst, Martin, Humphries, R Keith, Rouhi, Arefeh, Palmqvist, Lars, Kuchenbauer, Florian

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Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks by Pellacani, Davide, Bilenky, Misha, Kannan, Nagarajan, Heravi-Moussavi, Alireza, Knapp, David J.H.F., Gakkhar, Sitanshu, Moksa, Michelle, Carles, Annaick, Moore, Richard, Mungall, Andrew J., Marra, Marco A., Jones, Steven J.M., Aparicio, Samuel, Hirst, Martin, Eaves, Connie J.

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Using next-generation sequencing for the diagnosis of rare disorders: a family with retinitis pigmentosa and skeletal abnormalities by Schrader, Kasmintan A, Heravi-Moussavi, Alireza, Waters, Paula J, Senz, Janine, Whelan, James, Ha, Gavin, Eydoux, Patrice, Nielsen, Torsten, Gallagher, Barry, Oloumi, Arusha, Boyd, Niki, Fernandez, Bridget A, Young, Terry-Lynn, Jones, Steven JM, Hirst, Martin, Shah, Sohrab P, Marra, Marco A, Green, Jane, Huntsman, David G

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The specificity of the FOXL2 c.402C>G somatic mutation: a survey of solid tumors by Schrader, Kasmintan A, Gorbatcheva, Bella, Senz, Janine, Heravi-Moussavi, Alireza, Melnyk, Nataliya, Salamanca, Clara, Maines-Bandiera, Sarah, Cooke, Susanna L, Leung, Peter, Brenton, James D, Gilks, C Blake, Monahan, John, Huntsman, David G

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Effect of mastitis during the first lactation on production and reproduction performance of Holstein cows by Heravi Moussavi, Alireza, Danesh Mesgaran, Mohsen, Gilbert, Robert O.

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Epithelial-Mesenchymal Plasticity Induced by Discontinuous Exposure to TGFβ1 Promotes Tumour Growth by Santos, Mafalda, Ferreira, Marta, Oliveira, Patrícia, Mendes, Nuno, André, Ana, Vieira, André F., Nunes, Joana B., Carvalho, Joana, Rocha, Sara, Azevedo, Mafalda, Ferreira, Daniel, Reis, Inês, Vinagre, João, Paredes, Joana, Heravi-Moussavi, Alireza, Lima, Jorge, Máximo, Valdemar, Burleigh, Angela, Roskelley, Calvin, Carneiro, Fátima, Huntsman, David, Oliveira, Carla

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Novel candidate genes may be possible predisposing factors revealed by whole exome sequencing in familial esophageal squamous cell carcinoma by Forouzanfar, Narjes, Baranova, Ancha, Milanizadeh, Saman, Heravi-Moussavi, Alireza, Jebelli, Amir, Abbaszadegan, Mohammad Reza

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Integrative analysis of 111 reference human epigenomes by Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Heravi-Moussavi, Alireza, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ziller, Michael J., Amin, Viren, Whitaker, John W., Schultz, Matthew D., Ward, Lucas D., Sarkar, Abhishek, Quon, Gerald, Sandstrom, Richard S., Eaton, Matthew L., Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Coarfa, Cristian, Harris, R. Alan, Shoresh, Noam, Epstein, Charles B., Gjoneska, Elizabeta, Leung, Danny, Xie, Wei, Hawkins, R. David, Lister, Ryan, Hong, Chibo, Gascard, Philippe, Mungall, Andrew J., Moore, Richard, Chuah, Eric, Tam, Angela, Canfield, Theresa K., Hansen, R. Scott, Kaul, Rajinder, Sabo, Peter J., Bansal, Mukul S., Carles, Annaick, Dixon, Jesse R., Farh, Kai-How, Feizi, Soheil, Karlic, Rosa, Kim, Ah-Ram, Kulkarni, Ashwinikumar, Li, Daofeng, Lowdon, Rebecca, Elliott, GiNell, Mercer, Tim R., Neph, Shane J., Onuchic, Vitor, Polak, Paz, Rajagopal, Nisha, Ray, Pradipta, Sallari, Richard C., Siebenthall, Kyle T., Sinnott-Armstrong, Nicholas A., Stevens, Michael, Thurman, Robert E., Wu, Jie, Zhang, Bo, Zhou, Xin, Beaudet, Arthur E., Boyer, Laurie A., De Jager, Philip L., Farnham, Peggy J., Fisher, Susan J., Haussler, David, Jones, Steven J. M., Li, Wei, Marra, Marco A., McManus, Michael T., Sunyaev, Shamil, Thomson, James A., Tlsty, Thea D., Tsai, Li-Huei, Wang, Wei, Waterland, Robert A., Zhang, Michael Q., Chadwick, Lisa H., Bernstein, Bradley E., Costello, Joseph F., Ecker, Joseph R., Hirst, Martin, Meissner, Alexander, Milosavljevic, Aleksandar, Ren, Bing, Stamatoyannopoulos, John A., Wang, Ting, Kellis, Manolis

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Patient and provider attitudes regarding sudden unexpected death in epilepsy disclosure at a low-resource, minority community health center by Schwartz, Kendall, Moussavi, Alireza, Bujan Figueredo, Reynaldo, Ghering, Julia, Redford, Wendy, Saririan, Shahrzad, Irwin, Chase, Buchhalter, Jeffrey

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The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery by Adams, David, Altucci, Lucia, Amit, Ido, Aparicio, Samuel, Arima, Takahiro, Asnafi, Vahid, Bae, Jae-Bum, Bassler, Kevin, Bilenky, Mikhail, Boehm, Bernhard, Bourque, Guillaume, Brors, Benedikt, Bussemakers, Marion J., Chadwick, Lisa, Chen, Wei, Cheung, Tom H., Choi, Nak Hyen, Chung, Ho-Ryun, Clarke, Laura, Dermitzakis, Manolis, Dylag, Tomasz, Eaves, Connie J., Ebert, Peter, Eils, Jürgen, Enver, Tariq, Ferguson-Smith, Anne, Fitzgibbon, Jude, Flicek, Paul, Fraser, Peter, Gasparoni, Nina, Gasparoni, Gilles, Heath, Simon, Helin, Kristian, Hitz, Benjamin C., Horsthemke, Bernhard, Ip, Nancy Y., Ito, Takashi, Jenuwein, Thomas, Joly, Yann, Kanai, Yae, Kang, Hee Gyung, Kiemer, Alexandra K., Kim, Song Cheol, Kim, Bong-Jo, Lehrach, Hans, Leitão, Elsa, Lengauer, Thomas, Lernmark, Åke, Leung, Gilberto K.K., Leung, Danny, Ma, Yussanne, Martin-Subero, Jose Ignacio, Maschke, Karen, Merten, Christoph, Minucci, Saverio, Mitsuyama, Totai, Moore, Richard A., Nordström, Karl, Norstedt, Irene, Ouellette, Francis, Pap, Thomas, Pelicci, Pier Giuseppe, Phillips, Anthony G., Polansky, Julia, Pospisilik, J. Andrew, Prabhakar, Shyam, Procaccini, Dena C., Radbruch, Andreas, Rajewsky, Nikolaus, Rakyan, Vardham, Richardson, David, Rothstein, Mark, Sasaki, Hiroyuki, Sauer, Sascha, Schmidt, Florian, Schultze, Joachim L., Schulyer, Ronald P., Schulz, Marcel, Siebert, Reiner, Sinha, Anupam, Soranzo, Nicole, Spivakov, Mikhail, Steidl, Christian, Suzuki, Narumi, Torrents, David, Tyson, Frederick L., Ullrich, Sebastian, Ushijima, Toshikazu, Valencia, Alfonso, Wallace, Chris, Weber, Stephanie, Weiler, Nina, Weng, Andrew, Wilder, Steven, Yamashita, Yasuhiro, Yap, Desmond Y., Yip, Kevin Y., Yip, Stephen, Zerbino, Daniel, Zipprich, Gideon

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Analysis of energy integration opportunities in the retrofit of a milk powder production plant using the Bridge framework by Bergamini, Riccardo, Moussavi, Alireza, Shahhosseini, Hamid Reza, Nguyen, Tuong-Van, Bellemo, Lorenzo, Elmegaard, Brian, Stuart, Paul

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The clonal and mutational evolution spectrum of primary triple-negative breast cancers by Shah, Sohrab P., Roth, Andrew, Goya, Rodrigo, Oloumi, Arusha, Ha, Gavin, Zhao, Yongjun, Turashvili, Gulisa, Ding, Jiarui, Tse, Kane, Haffari, Gholamreza, Bashashati, Ali, Prentice, Leah M., Khattra, Jaswinder, Burleigh, Angela, Yap, Damian, Bernard, Virginie, McPherson, Andrew, Shumansky, Karey, Crisan, Anamaria, Giuliany, Ryan, Heravi-Moussavi, Alireza, Rosner, Jamie, Lai, Daniel, Birol, Inanc, Varhol, Richard, Tam, Angela, Dhalla, Noreen, Zeng, Thomas, Ma, Kevin, Chan, Simon K., Griffith, Malachi, Moradian, Annie, Cheng, S.-W. Grace, Morin, Gregg B., Watson, Peter, Gelmon, Karen, Chia, Stephen, Chin, Suet-Feung, Curtis, Christina, Rueda, Oscar M., Pharoah, Paul D., Damaraju, Sambasivarao, Mackey, John, Hoon, Kelly, Harkins, Timothy, Tadigotla, Vasisht, Sigaroudinia, Mahvash, Gascard, Philippe, Tlsty, Thea, Costello, Joseph F., Meyer, Irmtraud M., Eaves, Connie J., Wasserman, Wyeth W., Jones, Steven, Huntsman, David, Hirst, Martin, Caldas, Carlos, Marra, Marco A., Aparicio, Samuel

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Linking pinch analysis and bridge analysis to save energy by heat-exchanger network retrofit by Bonhivers, Jean-Christophe, Moussavi, Alireza, Alva-Argaez, Alberto, Stuart, Paul R.

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Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways by Chun, Hye-Jung E., Lim, Emilia L., Heravi-Moussavi, Alireza, Saberi, Saeed, Mungall, Karen L., Bilenky, Mikhail, Carles, Annaick, Tse, Kane, Shlafman, Inna, Zhu, Kelsey, Qian, Jenny Q., Palmquist, Diana L., He, An, Long, William, Goya, Rodrigo, Ng, Michelle, LeBlanc, Veronique G., Pleasance, Erin, Thiessen, Nina, Wong, Tina, Chuah, Eric, Zhao, Yong-Jun, Schein, Jacquie E., Gerhard, Daniela S., Taylor, Michael D., Mungall, Andrew J., Moore, Richard A., Ma, Yussanne, Jones, Steven J.M., Perlman, Elizabeth J., Hirst, Martin, Marra, Marco A.

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Familial Esophageal Squamous Cell Carcinoma with damaging rare/germline mutations in KCNJ12/KCNJ18 and GPRIN2 genes by Khalilipour, Narjes, Baranova, Ancha, Jebelli, Amir, Heravi-Moussavi, Alireza, Bruskin, Sergey, Abbaszadegan, Mohammad Reza

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A Pan-Cancer Analysis of Alternative Splicing Events Reveals Novel Tumor-Associated Splice Variants of Matriptase by Dargahi, Daryanaz, Swayze, Richard D., Yee, Leanna, Bergqvist, Peter J., Hedberg, Bradley J., Heravi-Moussavi, Alireza, Dullaghan, Edie M., Dercho, Ryan, An, Jianghong, Babcook, John S., Jones, Steven J.M.

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DMRFusion: A differentially methylated region detection tool based on the ranked fusion method by Yassi, Maryam, Shams Davodly, Ehsan, Mojtabanezhad Shariatpanahi, Afsaneh, Heidari, Mehdi, Dayyani, Mahdieh, Heravi-Moussavi, Alireza, Moattar, Mohammad Hossein, Kerachian, Mohammad Amin

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