The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices by Enache, Oana M, Lahr, David L, Natoli, Ted E, Litichevskiy, Lev, Wadden, David, Flynn, Corey, Gould, Joshua, Asiedu, Jacob K, Narayan, Rajiv, Subramanian, Aravind

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Abstract PR11: Reference pharmacologic class analysis for Connectivity Map discovery by Corsello, Steven M., Narayan, Rajiv, Gould, Joshua, Natoli, Ted E., Lu, Xiaodong, Subramanian, Aravind, Golub, Todd R.

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Abstract A2-26: Reference pharmacologic class analysis for Connectivity Map discovery by Corsello, Steven M., Narayan, Rajiv, Gould, Joshua, Natoli, Ted E., Lu, Xiaodong, Subramanian, Aravind, Golub, Todd R.

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Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map by Smith, Ian, Greenside, Peyton G, Natoli, Ted, Lahr, David L, Wadden, David, Tirosh, Itay, Narayan, Rajiv, Root, David E, Golub, Todd R, Subramanian, Aravind, Doench, John G

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Chronic inflammation, neutrophil activity, and autoreactivity splits long COVID by Woodruff, Matthew C., Bonham, Kevin S., Anam, Fabliha A., Walker, Tiffany A., Faliti, Caterina E., Ishii, Yusho, Kaminski, Candice Y., Ruunstrom, Martin C., Cooper, Kelly Rose, Truong, Alexander D., Dixit, Adviteeya N., Han, Jenny E., Ramonell, Richard P., Haddad, Natalie S., Rudolph, Mark E., Yalavarthi, Srilakshmi, Betin, Viktoria, Natoli, Ted, Navaz, Sherwin, Jenks, Scott A., Zuo, Yu, Knight, Jason S., Khosroshahi, Arezou, Lee, F. Eun-Hyung, Sanz, Ignacio

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High-throughput Phenotyping of Lung Cancer Somatic Mutations by Berger, Alice H., Brooks, Angela N., Wu, Xiaoyun, Shrestha, Yashaswi, Chouinard, Candace, Piccioni, Federica, Bagul, Mukta, Kamburov, Atanas, Imielinski, Marcin, Hogstrom, Larson, Zhu, Cong, Yang, Xiaoping, Pantel, Sasha, Sakai, Ryo, Watson, Jacqueline, Kaplan, Nathan, Campbell, Joshua D., Singh, Shantanu, Root, David E., Narayan, Rajiv, Natoli, Ted, Lahr, David L., Tirosh, Itay, Tamayo, Pablo, Getz, Gad, Wong, Bang, Doench, John, Subramanian, Aravind, Golub, Todd R., Meyerson, Matthew, Boehm, Jesse S.

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Systematic Functional Interrogation of Rare Cancer Variants Identifies Oncogenic Alleles by Kim, Eejung, Ilic, Nina, Shrestha, Yashaswi, Zou, Lihua, Kamburov, Atanas, Zhu, Cong, Yang, Xiaoping, Lubonja, Rakela, Tran, Nancy, Nguyen, Cindy, Lawrence, Michael S, Piccioni, Federica, Bagul, Mukta, Doench, John G, Chouinard, Candace R, Wu, Xiaoyun, Hogstrom, Larson, Natoli, Ted, Tamayo, Pablo, Horn, Heiko, Corsello, Steven M, Lage, Kasper, Root, David E, Subramanian, Aravind, Golub, Todd R, Getz, Gad, Boehm, Jesse S, Hahn, William C

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High-throughput Phenotyping of Lung Cancer Somatic Mutations by Berger, Alice H., Brooks, Angela N., Wu, Xiaoyun, Shrestha, Yashaswi, Chouinard, Candace, Piccioni, Federica, Bagul, Mukta, Kamburov, Atanas, Imielinski, Marcin, Hogstrom, Larson, Zhu, Cong, Yang, Xiaoping, Pantel, Sasha, Sakai, Ryo, Watson, Jacqueline, Kaplan, Nathan, Campbell, Joshua D., Singh, Shantanu, Root, David E., Narayan, Rajiv, Natoli, Ted, Lahr, David L., Tirosh, Itay, Tamayo, Pablo, Getz, Gad, Wong, Bang, Doench, John, Subramanian, Aravind, Golub, Todd R., Meyerson, Matthew, Boehm, Jesse S.

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Exploring cosmic origins with CORE: Gravitational lensing of the CMB by Challinor, A., Allison, R., Carron, J., Errard, J., Feeney, S., Kitching, T., Lesgourgues, J., Lewis, A., Zubeldía, Í., Achucarro, A., Ade, P., Ashdown, M., Ballardini, M., Banday, A.J., Banerji, R., Bartlett, J., Bartolo, N., Basak, S., Baumann, D., Bersanelli, M., Bonaldi, A., Bonato, M., Borrill, J., Bouchet, F., Boulanger, F., Brinckmann, T., Bucher, M., Burigana, C., Buzzelli, A., Cai, Z.-Y., Calvo, M., Carvalho, C.-S., Castellano, G., Chluba, J., Clesse, S., Colantoni, I., Coppolecchia, A., Crook, M., d'Alessandro, G., de Bernardis, P., de Gasperis, G., Zotti, G. De, Delabrouille, J., Valentino, E. Di, Diego, J.-M., Fernandez-Cobos, R., Ferraro, S., Finelli, F., Forastieri, F., Galli, S., Genova-Santos, R., Gerbino, M., González-Nuevo, J., Grandis, S., Greenslade, J., Hagstotz, S., Hanany, S., Handley, W., Hernandez-Monteagudo, C., Hervías-Caimapo, C., Hills, M., Hivon, E., Kiiveri, K., Kisner, T., Kunz, M., Kurki-Suonio, H., Lamagna, L., Lasenby, A., Lattanzi, M., Liguori, M., Lindholm, V., López-Caniego, M., Luzzi, G., Maffei, B., Martinez-González, E., Martins, C.J.A.P., Masi, S., Matarrese, S., McCarthy, D., Melchiorri, A., Melin, J.-B., Molinari, D., Monfardini, A., Natoli, P., Negrello, M., Notari, A., Paiella, A., Paoletti, D., Patanchon, G., Piat, M., Pisano, G., Polastri, L., Polenta, G., Pollo, A., Poulin, V., Quartin, M., Remazeilles, M., Roman, M., Rubino-Martin, J.-A., Salvati, L.

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An Unbiased Approach To Identify Endogenous Substrates of “Histone” Deacetylase 8 by Olson, David E, Udeshi, Namrata D, Wolfson, Noah A, Pitcairn, Carol Ann, Sullivan, Eric D, Jaffe, Jacob D, Svinkina, Tanya, Natoli, Ted, Lu, Xiaodong, Paulk, Joshiawa, McCarren, Patrick, Wagner, Florence F, Barker, Doug, Howe, Eleanor, Lazzaro, Fanny, Gale, Jennifer P, Zhang, Yan-Ling, Subramanian, Aravind, Fierke, Carol A, Carr, Steven A, Holson, Edward B

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A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses by Gross, Sean M., Dane, Mark A., Smith, Rebecca L., Devlin, Kaylyn L., McLean, Ian C., Derrick, Daniel S., Mills, Caitlin E., Subramanian, Kartik, London, Alexandra B., Torre, Denis, Evangelista, John Erol, Clarke, Daniel J. B., Xie, Zhuorui, Erdem, Cemal, Lyons, Nicholas, Natoli, Ted, Pessa, Sarah, Lu, Xiaodong, Mullahoo, James, Li, Jonathan, Adam, Miriam, Wassie, Brook, Liu, Moqing, Kilburn, David F., Liby, Tiera A., Bucher, Elmar, Sanchez-Aguila, Crystal, Daily, Kenneth, Omberg, Larsson, Wang, Yunguan, Jacobson, Connor, Yapp, Clarence, Chung, Mirra, Vidovic, Dusica, Lu, Yiling, Schurer, Stephan, Lee, Albert, Pillai, Ajay, Subramanian, Aravind, Papanastasiou, Malvina, Fraenkel, Ernest, Feiler, Heidi S., Mills, Gordon B., Jaffe, Jake D., Ma’ayan, Avi, Birtwistle, Marc R., Sorger, Peter K., Korkola, James E., Gray, Joe W., Heiser, Laura M.

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