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    Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation by Malta, Tathiane M., Gentles, Andrew J., Weinstein, John N., Czerwińska, Patrycja, Heyn, Holger, Godwin, Andrew K., Zhang, Jiashan (Julia), Wu, Ye, Liu, Yuexin, Reynolds, Sheila, Akbani, Rehan, Kanchi, Rupa S., Ladanyi, Marc, Peto, Myron, Bowlby, Reanne, Schein, Jacqueline E., Sipahimalani, Payal, Thiessen, Nina, Cope, Leslie, Weisenberger, Daniel J., Hoyle, Alan P., Mieczkowski, Piotr A., Shi, Yan, Veluvolu, Umadevi, Zhou, Wanding, Bellair, Michelle, Creighton, Chad J., Gibbs, Richard A., Li, Wei, Xi, Liu, Zhao, Fengmei, Mardis, Elaine R., Paulauskis, Joseph, Eschbacher, Jennifer, Ittmann, Michael, Le, Xuan, Thorp, Richard, Lyadov, Vladimir, Setdikova, Galiya, Raut, Chandrajit P., Barrett, Wendi, Karlan, Beth Y., Hu, Hai, Bennett, Joseph, Chabot, John, Hibshoosh, Hanina, Potapova, Olga, Voronina, Olga, Berchuck, Andrew, McCall, Shannon, Olson, Jeffrey J., Ramalingam, Suresh, Stoop, Hans, Guillermo, Armando López, Castle, Erik, Kopp, Karla, Roberts, Lewis, Stanton, Melissa, Yang, Ju Dong, Broaddus, Russell, Guo, Charles, Moran, Cesar, Tamboli, Pheroze, Thompson, Timothy, Tsao, Anne, Wistuba, Ignacio, Haydu, Lauren, Saw, Robyn, Scolyer, Richard, Thompson, John, Reuter, Victor, Drwiega, Paul, Hung, Nguyen Phi, Pass, Harvey, Gorincioi, Ghenadie, Gilbert, Sebastien, Tamakawa, Raina, Chevalier, Simone, Morrison, Carl, Borgia, Jeffrey A., Junker, Kerstin, Bragazzi, Maria Consiglia, Moiseenko, Fedor, Duell, Rebecca, Pilarski, Robert, Senecal, Kelly, Henderson, Joel, Schadendorf, Dirk, Olabode, Oluwole, Nelson, Mark, Roggin, Kevin, Carey, Francis, Carney, Michael, Hernandez, Brenda, Walker, Joan, Valdivieso, Federico, Luketich, James, Tirapelli, Daniela, Catto, James, Kovatich, Albert J.

    Published in Cell
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    lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer by Li, Song, Wan, Yunhu, Wu, Ye, Akbani, Rehan, Rao, Arvind, Luna, Augustin, Phillips, Sarah M., Sumer, S. Onur, Spellman, Paul, Benz, Christopher, Dhalla, Noreen, Holt, Robert, Sadeghi, Sara, Sipahimalani, Payal, Thiessen, Nina, Van Den Berg, David J., Perou, Charles M., Simons, Janae V., Doddapaneni, HarshaVardhan, Li, Wei, Bailey, Matthew, Ding, Li, Mallery, David, Shelton, Troy, Gastier-Foster, Julie M., Zmuda, Erik, Corcoran, Niall, Eschbacher, Jennifer, Noss, Ardene, Andry, Chris, Raut, Chandrajit P., Barrett, Wendi, De Rose, Agostino, Giuliante, Felice, Hagedorn, Curt H., Bennett, Joseph, Rabeno, Brenda, Swanson, Patricia, Staugaitis, Susan M., Chabot, John, Potapova, Olga, Secord, Angeles, Hanh, Phan Thi, Juhl, Hartmut, Akeredolu, Teniola, Birrer, Michael, Flotte, Thomas, Ho, Thai, Roberts, Lewis, Stanton, Melissa, Yang, Ju Dong, Gonzalez, Ana Maria Angulo, Bondaruk, Jolanta, Fujimoto, Junya, Gershenwald, Jeffrey, Lazar, Alexander J., Meric-Bernstam, Funda, Moran, Cesar, Synott, Maria, Wilmott, James, Reuter, Victor, Nair, Praveen, Metwalli, Adam R., Schmidt, Laura S., Vocke, Cathy D., Cernat, Mircea, Chemencedji, Inga, Pirtac, Maria, Alexopoulou, Iakovina, Tamakawa, Raina, Timmers, Henri, Schilero, Cathy, Smolenski, Kathy, Manikhas, George, Alvaro, Domenico, Chesla, David, Moiseenko, Fedor, Aziz, Dina, Elder, J. Bradley, Mandt, Randy, Wakely, Paul, Powers, James, Chan, June M., Landen, Charles N., Roggin, Kevin, Hernandez, Brenda, Unterberg, Andreas, Knudson, Michael, Knutson, Tina, Godwin, Andrew K., Bocklage, Therese, Postier, Russel, Zuna, Rosemary, Feldman, Michael, Dhir, Rajiv, Tirapelli, Daniela, Catto, James, Shelley, Carl Simon, Fong, Kwun M., Shriver, Craig D.

    Published in Cancer cell
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    The Immune Landscape of Cancer by Bortone, Dante S., Eddy, James A., Liu, Yuexin, Weinstein, John N., Holt, Robert A., Zenklusen, Jean C., Cho, Juok, Reynolds, Sheila, Liu, Wenbin, Ryan, Michael, Chakravarty, Debyani, Schultz, Nikolaus, Stuart, Joshua M., Wilkerson, Matthew D., Balasundaram, Miruna, Carlsen, Rebecca, Chuah, Eric, Holt, Robert, Lee, Darlene, Ha, Gavin, Schumacher, Steven E., Cope, Leslie, Balu, Saianand, Shi, Yan, Hinoue, Toshinori, Glenn, Robert, Miller, Christopher A., Curley, Erin, Mallery, David, Morris, Scott, Longatto-Filho, Adhemar, Reis, Rui M., Scapulatempo-Neto, Cristovam, Singh, Rosy, Le, Xuan, Thorp, Richard, Setdikova, Galiya, Shabunin, Alexey, Barrett, Wendi, Ostrom, Quinn T., Karlan, Beth Y., Hu, Hai, Latour, Mathieu, Lacombe, Louis, Su, Tao, Signoretti, Sabina, Marks, Jeffrey, Olson, Jeffrey J., Sica, Gabriel, Stoop, Hans, Pollo, Bianca, Aymerich, Marta, Stepa, Serghei, Moser, Catherine, Roberts, Lewis, Czerniak, Bogdan, Lazar, Alexander J., Jakrot, Valerie, Scolyer, Richard, Thompson, John, Wilmott, James, Reuter, Victor, Tien, Nguyen Viet, Park, Joong-Won, Pinto, Peter A., Moncrieff, Marc, Botnariuc, Natalia, Pirtac, Maria, Parfitt, Jeremy, Bifulco, Carlo, Antenucci, Anna, Grazi, Gianluca, Marino, Mirella, Chevalier, Simone, McKercher, Ginette, Naska, Theresa, Borgia, Jeffrey A., Pool, Mark, Junker, Kerstin, Moiseenko, Fedor, Hilty, Joe, Pilarski, Robert, Porten, Sima, Asa, Sylvia L., Schadendorf, Dirk, Disaia, Philip, Kelley, Robin K., Sifri, Suzanne, Mannelli, Massimo, Knutson, Tina, Sigmund, Rita, Postier, Russel, Walker, Joan, Feldman, Michael, Luketich, James, Rozek, Laura, Fong, Kwun M., Hooke, Jeffrey A., Govindan, Ramaswamy, Aredes, Natália D.

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    An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics by Omberg, Larsson, Wolf, Denise M., Sofia, Heidi J., Chudamani, Sudha, Lolla, Laxmi, Pihl, Todd, Lin, Pei, Chambwe, Nyasha, Kramer, Roger, Thorsson, Vesteinn, Wang, Jing, Armenia, Joshua, Chatila, Walid K., de Bruijn, Ino, Gross, Benjamin E., Brooks, Denise, Tam, Angela, Tse, Kane, Meng, Shaowu, Korchina, Viktoriya, Cordes, Matthew G., McLellan, Michael D., Miller, Christopher A., Shelton, Candace, Yena, Peggy, Wise, Lisa, Costello, Tony, Hovens, Christopher, Silveira, Henrique C.S., Singh, Rosy, Anderson, Matthew L., Duffy, Elizabeth R., Tavobilov, Mikhail, Cramer, Daniel, Horowitz, Neil, Fulop, Jordonna, Wolinsky, Yingli, Sloan, Andrew E., Mural, Richard J., Latour, Mathieu, Lacombe, Louis, Wang, Timothy, Magliocca, Kelly, Pickens, Alan, Shin, Dong M., Van Meir, Erwin G., Zhang, Hongzheng, Cuzzubbo, Stefania, Hartmann, Arndt, Stoehr, Christine, Wach, Sven, Kycler, Witold, Chung, Ki, Martin, Julie, De Rienzo, Assunta, Richards, William G., Kalkanis, Steven, Gabra, Hani, Ahn, Keunsoo, Farnell, Michael, Patel, Tushar, Smallridge, Robert, Rice, David, Troncoso, Patricia, Mann, Graham, Levine, Douglas A., Singer, Samuel, Linehan, W. Marston, Melamed, Jonathan, Parfitt, Jeremy, Sekhon, Harman, Thomas, George, Bifulco, Carlo, Hayward, Nicholas, Grazi, Gianluca, de Krijger, Ronald, Birsoy, Kivanc, Brewer, Cathy, Williams, Felicia, Pool, Mark, Dinkin, Mikhail, Schoenfield, Lynn, Hansen, Paul, Asa, Sylvia L., Glenn, Pat, Jungk, Christin, Ma, Deqin, Milhem, Mohammed, Madan, Rashna, Mannel, Robert, Dos Santos, Jose Sebastião, Moyer, Jeffey, Rozek, Laura, Yang, Ian, Korst, Robert, Rathmell, W. Kimryn, Drake, Bettina, Westervelt, Peter, Lee, Jung Il, Hu, Hai

    Published in Cell
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    Oncogenic Signaling Pathways in The Cancer Genome Atlas by Chatila, Walid K., Luna, Augustin, Kantheti, Havish S., Daian, Foysal, Shmulevich, Ilya, Greene, Casey S., Iavarone, Antonio, Tward, Aaron D., Meyerson, Matthew, Sofia, Heidi J., Zenklusen, Jean C., Pihl, Todd, Meier, Sam, Noble, Michael S., Kramer, Roger, Hegde, Apurva M., Li, Jun, Rao, Arvind, Abeshouse, Adam, Schultz, Nikolaus, Taylor, Barry S., Stuart, Joshua M., Wong, Christopher K., Parker, Joel S., Carlsen, Rebecca, Tam, Angela, Gabriel, Stacey B., Ha, Gavin, Schumacher, Steven E., Maglinte, Dennis T., Balu, Saianand, Skelly, Tara, Laird, Peter W., Lewis, Lora, Muzny, Donna, Santibanez, Jireh, Wang, Min, Morris, Scott, Shelton, Candace, Gerken, Mark, Costello, Tony, Reis, Rui M., Scapulatempo-Neto, Cristovam, Singh, Rosy, Duffy, Elizabeth R., Setdikova, Galiya, Devine, Karen, Ostrom, Quinn T., Deyarmin, Brenda, Kvecher, Leonid, Mural, Richard J., Latour, Mathieu, Lacombe, Louis, Lipp, Eric, Marks, Jeffrey, Pickens, Alan, Shin, Dong M., Zhang, Hongzheng, Calatozzolo, Chiara, Cuzzubbo, Stefania, Kycler, Witold, Giné, Eva, Beuschlein, Felix, Borad, Mitesh, Chandan, Vishal, Farnell, Michael, Torbenson, Michael, Logothetis, Christopher, Rice, David, Jakrot, Valerie, Mann, Graham, Moncrieff, Marc, Doruc, Serghei, Bartlett, John, Parfitt, Jeremy, Bifulco, Carlo, Hayward, Nicholas, Grazi, Gianluca, Marino, Mirella, Naska, Theresa, Borgia, Jeffrey A., Pool, Mark, Gaudio, Eugenio, Bell, Sue, Hilty, Joe, Sexton, Katherine C., Asa, Sylvia L., Schlomm, Thorsten, Prados, Michael, Smith-McCune, Karen, Bossler, Aaron, Moxley, Katherine, Carlotti, Carlos Gilberto, Swisher, Elizabeth, Korst, Robert, Rathmell, W. Kimryn, Heath, Sharon, Aredes, Natália D., Mariamidze, Armaz, Van Allen, Eliezer M.

    Published in Cell
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    Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer by Wolf, Denise M., Cherniack, Andrew D., Sanchez-Vega, Francisco, Sun, Qiang, Wu, Ye, Gehlenborg, Nils, Zhang, Hailei, Akbani, Rehan, Ling, Shiyun, Rao, Arvind, Phillips, Sarah M., Sun, Yichao, Benz, Christopher, Dhalla, Noreen, Robertson, A. Gordon, Sipahimalani, Payal, Wong, Tina, Weisenberger, Daniel J., Bodenheimer, Tom, Roach, Jeffrey, Simons, Janae V., Fan, Huihui, Zhou, Wanding, Dinh, Huyen, Doddapaneni, HarshaVardhan, Han, Yi, Lee, Sandra, Liu, Xiuping, Hess, Julian, Ding, Li, Fulton, Lucinda A., Shelton, Troy, Zmuda, Erik, de Carvalho, Ana C., Vidal, Daniel O., Eschbacher, Jennifer, Hermes, Beth, Noss, Ardene, Shabunin, Alexey, Eckman, John, Bennett, Joseph, Rabeno, Brenda, Swanson, Patricia, Bergeron, Alain, Staugaitis, Susan M., Chabot, John, McCall, Shannon, Behera, Madhusmita, Brat, Daniel J., Force, Seth, Eijckenboom, Wil, Zwarthoff, Ellen C., Cuppini, Lucia, Murawa, Dawid, Mikkelsen, Tom, Hanh, Phan Thi, Phu, Bui Duc, Tang, Yufang, Colman, Howard, Birrer, Michael, Ho, Thai, Nagorney, David, Meric-Bernstam, Funda, Moran, Cesar, Hersey, Peter, Synott, Maria, Mirsaidi, Cyrus, Metwalli, Adam R., Vocke, Cathy D., Goparaju, Chandra, Cernat, Mircea, Gilbert, Sebastien, Timmers, Henri, Schilero, Cathy, Manikhas, George, Chesla, David, Janssen, Klaus-Peter, Slotta-Huspenina, Julia, Davis, Amy, Elder, J. Bradley, Lehman, Norman L., Mandt, Randy, Wakely, Paul, Powers, James, Carroll, Peter R., Chan, June M., Roggin, Kevin, Fehrenbach, Ashley, Galbraith, Joseph, Knudson, Michael, Saad, Fred, Bocklage, Therese, Zuna, Rosemary, Feldman, Michael, Quintero-Aguilo, Mario, Tirapelli, Daniela, Creaney, Jenette, Shelley, Carl Simon, Bradford, Carol, Prince, Mark

    Published in Cell
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    Comprehensive Characterization of Cancer Driver Genes and Mutations by Colaprico, Antonio, Cao, Song, Liang, Wen-Wei, Hess, Julian M., Ferguson, Martin L., Hutter, Carolyn M., Tarnuzzer, Roy, Wang, Zhining, Noble, Michael S., Dhankani, Varsha, Knijnenburg, Theo, Miller, Michael, Abeshouse, Adam, Ladanyi, Marc, Luna, Augustin, Wong, Christopher K., Yau, Christina, Kasaian, Katayoon, Kucherlapati, Melanie H., Danilova, Ludmila, Bootwalla, Moiz S., Fan, Cheng, Mose, Lisle E., Roach, Jeffrey, Tan, Donghui, Covington, Kyle, Donehower, Lawrence A., Drummond, Jennifer, Liu, Xiuping, Morgan, Margaret, Wheeler, David A., Appelbaum, Elizabeth L., Bailey, Matthew, Kandoth, Cyriac, Wilson, Richard K., Penny, Robert, Thompson, Eric, Zmuda, Erik, de Carvalho, Ana C., Fregnani, José H., Huntsman, David, Kohl, Bernard, Paklina, Oxana, McPherson, Christopher, Barnholtz-Sloan, Jill S., Tucker, Kelinda, Larson, Caroline, Iacocca, Mary, Bergeron, Alain, Sepulveda, Antonia, Desjardins, Laurence, Sastre, Xavier, Cheng, Feixiong, Force, Seth, Khuri, Fadlo, Owonikoko, Taofeek, Korpershoek, Esther, Looijenga, Leendert, DiMeco, Francesco, Kycler, Witold, Chung, Ki, Noushmehr, Houtan, Scarpace, Lisa, Campo, Elias, Van Bang, Nguyen, Colman, Howard, Breggia, Anne, Bryce, Alan H., Copland, John A., Petersen, Gloria, Zhang, Lizhi, Mann, Graham, Mirsaidi, Cyrus, Zaren, Howard, Stancul, Irina, Tcaciuc, Diana, Arnaout, Angel, Rassl, Doris M., Urba, Walter, Farver, Carol, Raymond, Daniel, Dinkin, Mikhail, Carpino, Guido, Dubina, Michael, Abdel-Rahman, Mohamed H., Mandt, Randy, Nguyen, Phuong, Rai, Karan, Waldmann, Jens, Fassnacht, Martin, Simon, Ronald, Fehrenbach, Ashley, von Deimling, Andreas, Jacobus, Laura, Carlotti, Carlos Gilberto, Godwin, Eryn M., Carey, Thomas, Getz, Gad, Lazar, Alexander J., Ding, Li

    Published in Cell
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