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Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
by
Orlek, Alex
,
Stoesser, Nicole
,
Anjum, Muna F
,
Doumith, Michel
,
Ellington, Matthew J
,
Peto, Tim
,
Crook, Derrick
,
Woodford, Neil
,
Walker, A Sarah
,
Phan, Hang
,
Sheppard, Anna E
Published in
Frontiers in microbiology
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Hotspot mutations and ColE1 plasmids contribute to the fitness of Salmonella Heidelberg in poultry litter
by
Oladeinde, Adelumola
,
Cook, Kimberly
,
Orlek, Alex
,
Zock, Greg
,
Herrington, Kyler
,
Cox, Nelson
,
Plumblee Lawrence, Jodie
,
Hall, Carolina
Published in
PloS one
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Factors associated with plasmid antibiotic resistance gene carriage revealed using large-scale multivariable analysis
by
Orlek, Alex
,
Anjum, Muna F.
,
Mather, Alison E.
,
Stoesser, Nicole
,
Walker, A. Sarah
Published in
Scientific reports
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Patient Characteristics Associated with Repeat Antibiotic Prescribing Pre- and during the COVID-19 Pandemic: A Retrospective Nationwide Cohort Study of >19 Million Primary Care Rec...
by
Orlek, Alex
,
Harvey, Eleanor
,
Fisher, Louis
,
Mehrkar, Amir
,
Bacon, Seb
,
Goldacre, Ben
,
MacKenna, Brian
,
Ashiru-Oredope, Diane
Published in
Pharmacoepidemiology
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A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database
by
Orlek, Alex
,
Phan, Hang
,
Sheppard, Anna E.
,
Doumith, Michel
,
Ellington, Matthew
,
Peto, Tim
,
Crook, Derrick
,
Walker, A. Sarah
,
Woodford, Neil
,
Anjum, Muna F.
,
Stoesser, Nicole
Published in
Data in brief
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Genomic Epidemiology of Complex, Multispecies, Plasmid-Borne blaKPC Carbapenemase in Enterobacterales in the United Kingdom from 2009 to 2014
by
Stoesser, Nicole
,
Phan, Hang T. T
,
Seale, Anna C
,
Aiken, Zoie
,
Thomas, Stephanie
,
Smith, Matthew
,
Wyllie, David
,
George, Ryan
,
Sebra, Robert
,
Mathers, Amy J
,
Vaughan, Alison
,
Peto, Timothy E. A
,
Ellington, Matthew J
,
Hopkins, Katie L
,
Crook, Derrick W
,
Orlek, Alex
,
Welfare, William
,
Cawthorne, Julie
,
Lenney, Cheryl
,
Dodgson, Andrew
,
Woodford, Neil
,
Walker, A. Sarah
Published in
Antimicrobial agents and chemotherapy
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Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids
by
Orlek, Alex
,
Phan, Hang
,
Sheppard, Anna E.
,
Doumith, Michel
,
Ellington, Matthew
,
Peto, Tim
,
Crook, Derrick
,
Walker, A. Sarah
,
Woodford, Neil
,
Anjum, Muna F.
,
Stoesser, Nicole
Published in
Plasmid
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Genomic Epidemiology of Complex, Multispecies, Plasmid-Borne bla KPC Carbapenemase in Enterobacterales in the United Kingdom from 2009 to 2014
by
Stoesser, Nicole
,
Phan, Hang T T
,
Seale, Anna C
,
Aiken, Zoie
,
Thomas, Stephanie
,
Smith, Matthew
,
Wyllie, David
,
George, Ryan
,
Sebra, Robert
,
Mathers, Amy J
,
Vaughan, Alison
,
Peto, Timothy E A
,
Ellington, Matthew J
,
Hopkins, Katie L
,
Crook, Derrick W
,
Orlek, Alex
,
Welfare, William
,
Cawthorne, Julie
,
Lenney, Cheryl
,
Dodgson, Andrew
,
Woodford, Neil
,
Walker, A Sarah
Published in
Antimicrobial agents and chemotherapy
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